Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 397D
BPC Identified: 11
Ambiguities: 0
| vRNA |
397D |
16!A:46!B |
G:C |
WC [cWW][XIX] |
10.54 |
54.85; 57.0 |
2.15 |
-9.08 |
0.3 |
17.5 |
| vRNA |
397D |
17!A:45!B |
G:C |
WC [cWW][XIX] |
10.77 |
51.78; 52.59 |
0.81 |
-7.54 |
0.61 |
20.54 |
| vRNA |
397D |
18!A:44!B |
C:G |
WC [cWW][XIX] |
10.57 |
58.19; 54.26 |
3.94 |
-6.19 |
0.02 |
8.69 |
| vRNA |
397D |
19!A:43!B |
C:G |
WC [cWW][XIX] |
10.63 |
55.41; 55.13 |
0.28 |
-6.22 |
0.13 |
9.16 |
| vRNA |
397D |
20!A:42!B |
A:U |
WC [cWW][XX] |
10.5 |
57.5; 54.82 |
2.68 |
-8.2 |
0.01 |
10.83 |
| vRNA |
397D |
21!A:41!B |
G:C |
WC [cWW][XIX] |
10.49 |
57.45; 57.86 |
0.41 |
-12.38 |
0.24 |
17.73 |
| vRNA |
397D |
22!A:40!B |
A:U |
WC [cWW][XX] |
10.58 |
55.52; 55.36 |
0.17 |
-8.67 |
0.04 |
12.2 |
| vRNA |
397D |
26!A:39!B |
G:C |
WC [cWW][XIX] |
10.71 |
51.06; 55.56 |
4.5 |
-10.71 |
0.05 |
13.35 |
| vRNA |
397D |
27!A:38!B |
A:U |
WC [cWW][XX] |
10.7 |
53.31; 53.71 |
0.4 |
-6.86 |
0.08 |
11.42 |
| vRNA |
397D |
28!A:37!B |
G:C |
WC [cWW][XIX] |
10.64 |
57.12; 53.86 |
3.26 |
-10.55 |
0.15 |
17.17 |
| vRNA |
397D |
29!A:36!B |
C:G |
WC [cWW][XIX] |
10.72 |
53.67; 52.77 |
0.9 |
-9.9 |
0.14 |
14.05 |