Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3A2K
BPC Identified: 52
Ambiguities: 0
| tRNA |
3A2K |
1!C:73!C |
G:C |
WC [cWW][XIX] |
10.74 |
52.21; 57.1 |
4.89 |
2.99 |
0.93 |
9.43 |
| tRNA |
3A2K |
2!C:72!C |
G:C |
WC [cWW][XIX] |
10.68 |
59.75; 54.45 |
5.3 |
0.78 |
0.74 |
15.86 |
| tRNA |
3A2K |
3!C:71!C |
A:U |
WC [cWW][XX] |
10.41 |
57.63; 53.71 |
3.92 |
0.98 |
0.14 |
3.21 |
| tRNA |
3A2K |
4!C:70!C |
C:G |
WC [cWW][XIX] |
10.4 |
56.51; 58.09 |
1.58 |
-7.05 |
0.01 |
7.42 |
| tRNA |
3A2K |
5!C:69!C |
C:G |
WC [cWW][XIX] |
10.79 |
56.3; 57.29 |
0.99 |
-9.4 |
0.17 |
18.95 |
| tRNA |
3A2K |
6!C:68!C |
U:A |
WC [cWW][XX] |
10.36 |
56.99; 57.85 |
0.86 |
-19.13 |
0.99 |
30.5 |
| tRNA |
3A2K |
7!C:67!C |
U:A |
WC [cWW][XX] |
11.11 |
45.98; 56.46 |
10.48 |
-4.19 |
0.13 |
5.09 |
| tRNA |
3A2K |
10!C:26!C |
G:C |
WC [cWW][XIX] |
10.62 |
55.59; 56.34 |
0.74 |
7.39 |
0.33 |
14.82 |
| tRNA |
3A2K |
11!C:25!C |
C:G |
WC [cWW][XIX] |
10.46 |
53.74; 55.01 |
1.26 |
-7.91 |
0.36 |
24.23 |
| tRNA |
3A2K |
12!C:24!C |
U:A |
WC [cWW][XX] |
11.07 |
50.8; 52.25 |
1.46 |
-10.21 |
0.02 |
21.52 |
| tRNA |
3A2K |
13!C:23!C |
C:G |
WC [cWW][XIX] |
10.87 |
58.77; 52.45 |
6.32 |
-3.67 |
0.42 |
20.45 |
| tRNA |
3A2K |
14!C:22!C |
A:A |
pfS [cSW][-] |
9.55 |
37.76; 108.76 |
71.0 |
2.61 |
0.77 |
28.39 |
| tRNA |
3A2K |
18!C:56!C |
G:U |
fS_2 [---][-] |
9.28 |
33.47; 111.83 |
78.37 |
-161.99 |
0.28 |
14.5 |
| tRNA |
3A2K |
19!C:57!C |
G:C |
WC [cWW][XIX] |
10.82 |
57.29; 53.2 |
4.1 |
-14.99 |
1.03 |
37.95 |
| tRNA |
3A2K |
23!C:47!C |
G:G |
rH_1 [tWH][VII] |
10.79 |
35.31; 37.96 |
2.65 |
-156.66 |
0.11 |
16.3 |
| tRNA |
3A2K |
28!C:44!C |
G:C |
WC [cWW][XIX] |
10.99 |
49.31; 56.39 |
7.08 |
-9.07 |
0.02 |
10.79 |
| tRNA |
3A2K |
29!C:43!C |
A:U |
WC [cWW][XX] |
10.78 |
59.12; 52.07 |
7.06 |
6.79 |
0.12 |
7.85 |
| tRNA |
3A2K |
30!C:42!C |
C:G |
WC [cWW][XIX] |
11.08 |
56.84; 53.42 |
3.42 |
-8.64 |
0.42 |
17.98 |
| tRNA |
3A2K |
31!C:41!C |
G:C |
WC [cWW][XIX] |
10.66 |
54.94; 53.76 |
1.19 |
1.84 |
0.63 |
14.51 |
| tRNA |
3A2K |
32!C:40!C |
G:C |
WC [cWW][XIX] |
10.75 |
48.87; 57.6 |
8.72 |
-2.2 |
0.33 |
30.69 |
| tRNA |
3A2K |
50!C:66!C |
G:C |
WC [cWW][XIX] |
10.91 |
53.08; 51.06 |
2.03 |
-4.99 |
0.72 |
5.7 |
| tRNA |
3A2K |
51!C:65!C |
U:A |
WC [cWW][XX] |
10.79 |
48.83; 53.94 |
5.11 |
-8.51 |
0.32 |
14.08 |
| tRNA |
3A2K |
52!C:64!C |
A:U |
WC [cWW][XX] |
10.78 |
58.48; 51.21 |
7.27 |
8.56 |
0.04 |
16.36 |
| tRNA |
3A2K |
53!C:63!C |
G:C |
WC [cWW][XIX] |
10.69 |
62.11; 51.49 |
10.62 |
11.56 |
0.18 |
9.85 |
| tRNA |
3A2K |
54!C:62!C |
G:C |
WC [cWW][XIX] |
10.92 |
54.14; 54.55 |
0.4 |
17.09 |
0.45 |
19.27 |
| tRNA |
3A2K |
55!C:59!C |
U:A |
rH_1 [tWH][XXIV] |
10.16 |
32.01; 11.17 |
20.84 |
-150.17 |
0.52 |
11.4 |
| tRNA |
3A2K |
1!D:73!D |
G:C |
WC [cWW][XIX] |
10.75 |
51.9; 56.63 |
4.73 |
3.65 |
0.91 |
8.87 |
| tRNA |
3A2K |
2!D:72!D |
G:C |
WC [cWW][XIX] |
10.7 |
59.19; 54.3 |
4.89 |
1.39 |
0.8 |
16.53 |
| tRNA |
3A2K |
3!D:71!D |
A:U |
WC [cWW][XX] |
10.42 |
57.78; 53.96 |
3.83 |
1.86 |
0.07 |
1.94 |
| tRNA |
3A2K |
4!D:70!D |
C:G |
WC [cWW][XIX] |
10.39 |
56.66; 58.04 |
1.39 |
-6.67 |
0.04 |
6.92 |
| tRNA |
3A2K |
5!D:69!D |
C:G |
WC [cWW][XIX] |
10.79 |
55.51; 56.88 |
1.37 |
-8.24 |
0.16 |
18.54 |
| tRNA |
3A2K |
6!D:68!D |
U:A |
WC [cWW][XX] |
10.38 |
56.43; 57.79 |
1.36 |
-19.59 |
1.02 |
31.51 |
| tRNA |
3A2K |
7!D:67!D |
U:A |
WC [cWW][XX] |
11.12 |
46.19; 56.0 |
9.81 |
-3.16 |
0.25 |
6.16 |
| tRNA |
3A2K |
10!D:26!D |
G:C |
WC [cWW][XIX] |
10.64 |
55.19; 55.78 |
0.59 |
6.16 |
0.46 |
15.41 |
| tRNA |
3A2K |
11!D:25!D |
C:G |
WC [cWW][XIX] |
10.44 |
53.68; 54.3 |
0.62 |
-7.26 |
0.35 |
23.45 |
| tRNA |
3A2K |
12!D:24!D |
U:A |
WC [cWW][XX] |
11.06 |
50.54; 52.23 |
1.69 |
-9.0 |
0.01 |
20.54 |
| tRNA |
3A2K |
13!D:23!D |
C:G |
WC [cWW][XIX] |
10.87 |
58.3; 52.76 |
5.54 |
-4.29 |
0.44 |
21.75 |
| tRNA |
3A2K |
14!D:22!D |
A:A |
pfS [cSW][-] |
9.56 |
38.27; 108.82 |
70.55 |
0.74 |
0.63 |
27.37 |
| tRNA |
3A2K |
18!D:56!D |
G:U |
fS_2 [---][-] |
9.27 |
33.59; 111.64 |
78.05 |
-161.31 |
0.27 |
14.95 |
| tRNA |
3A2K |
19!D:57!D |
G:C |
WC [cWW][XIX] |
10.82 |
56.92; 52.55 |
4.36 |
-16.09 |
1.15 |
37.64 |
| tRNA |
3A2K |
23!D:47!D |
G:G |
rH_1 [tWH][VII] |
10.78 |
35.17; 38.13 |
2.96 |
-156.63 |
0.06 |
16.15 |
| tRNA |
3A2K |
28!D:44!D |
G:C |
WC [cWW][XIX] |
10.98 |
49.44; 56.52 |
7.08 |
-9.71 |
0.0 |
11.57 |
| tRNA |
3A2K |
29!D:43!D |
A:U |
WC [cWW][XX] |
10.76 |
59.42; 51.93 |
7.48 |
5.51 |
0.13 |
6.76 |
| tRNA |
3A2K |
30!D:42!D |
C:G |
WC [cWW][XIX] |
11.1 |
56.53; 52.9 |
3.63 |
-8.65 |
0.44 |
18.23 |
| tRNA |
3A2K |
31!D:41!D |
G:C |
WC [cWW][XIX] |
10.67 |
55.42; 54.15 |
1.27 |
1.37 |
0.68 |
14.98 |
| tRNA |
3A2K |
32!D:40!D |
G:C |
WC [cWW][XIX] |
10.78 |
48.65; 57.99 |
9.34 |
-0.96 |
0.32 |
28.66 |
| tRNA |
3A2K |
50!D:66!D |
G:C |
WC [cWW][XIX] |
10.91 |
53.37; 51.16 |
2.21 |
-4.05 |
0.61 |
5.47 |
| tRNA |
3A2K |
51!D:65!D |
U:A |
WC [cWW][XX] |
10.81 |
48.44; 54.21 |
5.77 |
-8.04 |
0.36 |
14.77 |
| tRNA |
3A2K |
52!D:64!D |
A:U |
WC [cWW][XX] |
10.79 |
58.35; 50.75 |
7.61 |
8.68 |
0.04 |
15.54 |
| tRNA |
3A2K |
53!D:63!D |
G:C |
WC [cWW][XIX] |
10.69 |
62.18; 51.71 |
10.47 |
11.92 |
0.1 |
9.56 |
| tRNA |
3A2K |
54!D:62!D |
G:C |
WC [cWW][XIX] |
10.9 |
54.4; 54.34 |
0.07 |
16.73 |
0.41 |
19.97 |
| tRNA |
3A2K |
55!D:59!D |
U:A |
rH_1 [tWH][XXIV] |
10.17 |
31.53; 10.61 |
20.92 |
-150.06 |
0.47 |
12.13 |