Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3ADD BPC Identified: 79 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3ADD 1!C:72!C G:C WC [cWW][XIX] 10.77 54.39; 53.0 1.39 7.91 0.53 7.11
tRNA 3ADD 2!C:71!C G:C WC [cWW][XIX] 10.54 55.16; 58.24 3.08 -0.19 0.04 14.87
tRNA 3ADD 3!C:70!C C:G WC [cWW][XIX] 10.56 55.26; 54.79 0.47 -3.94 0.36 11.95
tRNA 3ADD 4!C:69!C C:G WC [cWW][XIX] 10.84 53.91; 53.28 0.62 -4.26 0.04 6.71
tRNA 3ADD 5!C:68!C G:C WC [cWW][XIX] 10.55 54.55; 57.11 2.56 -4.3 0.05 9.14
tRNA 3ADD 5A!C:67B!C C:G WC [cWW][XIX] 10.54 59.27; 54.41 4.86 -4.3 0.3 14.46
tRNA 3ADD 5B!C:67A!C C:G WC [cWW][XIX] 10.62 55.12; 56.28 1.16 -2.03 0.01 9.31
tRNA 3ADD 6!C:67!C G:C WC [cWW][XIX] 10.68 54.81; 54.11 0.69 -9.77 0.07 11.03
tRNA 3ADD 7!C:66!C C:G WC [cWW][XIX] 10.75 55.61; 52.06 3.55 -0.04 0.21 8.47
tRNA 3ADD 10!C:25!C C:G WC [cWW][XIX] 10.68 53.79; 54.34 0.56 -2.89 0.13 11.85
tRNA 3ADD 11!C:24!C C:G WC [cWW][XIX] 10.64 56.67; 54.43 2.23 0.18 0.36 11.37
tRNA 3ADD 12!C:23!C G:C WC [cWW][XIX] 10.74 54.58; 54.21 0.37 -3.83 0.61 15.73
tRNA 3ADD 13!C:22!C G:C WC [cWW][XIX] 10.6 54.61; 55.31 0.7 -9.75 0.16 15.28
tRNA 3ADD 14!C:21!C G:C WC [cWW][XIX] 10.51 55.35; 58.11 2.76 -9.36 0.04 8.31
tRNA 3ADD 15!C:20A!C G:C WC [cWW][XIX] 10.73 54.25; 53.51 0.74 -9.0 0.43 11.84
tRNA 3ADD 16!C:59!C U:U rWb [tWW][XIII] 8.54 41.41; 48.8 7.39 -170.59 0.36 10.73
tRNA 3ADD 18!C:55!C G:U fS_1 [tSW][-] 8.46 29.32; 111.78 82.46 -120.89 0.39 22.95
tRNA 3ADD 19!C:56!C G:C WC [cWW][XIX] 10.67 55.19; 53.62 1.57 -12.4 0.9 24.86
tRNA 3ADD 19!C:20!C G:U pS* [cHS][-] 6.48 135.0; 61.87 73.13 23.66 0.88 19.35
tRNA 3ADD 26!C:44!C G:C WC [cWW][XIX] 10.74 53.27; 53.72 0.45 -8.91 0.36 10.8
tRNA 3ADD 27!C:43!C C:G WC [cWW][XIX] 10.59 56.32; 56.59 0.27 -10.1 0.01 11.75
tRNA 3ADD 28!C:42!C C:G WC [cWW][XIX] 10.76 55.01; 53.35 1.66 -5.65 0.04 8.26
tRNA 3ADD 29!C:41!C G:C WC [cWW][XIX] 10.97 51.51; 52.42 0.92 -6.44 0.2 10.8
tRNA 3ADD 30!C:40!C G:C WC [cWW][XIX] 10.8 53.61; 52.54 1.07 -11.7 0.21 15.61
tRNA 3ADD 31!C:39!C A:U WC [cWW][XX] 11.31 47.65; 45.79 1.86 -19.01 0.02 24.67
tRNA 3ADD 32!C:38!C C:A rH_1 [rWH][XXV] 10.56 32.96; 7.08 25.89 -153.63 0.44 32.95
tRNA 3ADD 45!C:48!C G:C WC [cWW][XIX] 10.65 53.53; 56.4 2.87 2.7 0.1 5.53
tRNA 3ADD 46!C:47N!C C:G WC [cWW][XIX] 10.66 54.0; 54.47 0.47 -4.58 0.07 8.07
tRNA 3ADD 47!C:47M!C G:C WC [cWW][XIX] 10.65 56.26; 52.32 3.94 -7.28 0.0 7.1
tRNA 3ADD 47A!C:47L!C C:G WC [cWW][XIX] 10.62 56.83; 54.07 2.76 -7.99 0.03 11.97
tRNA 3ADD 47B!C:47K!C C:G WC [cWW][XIX] 10.81 54.04; 54.56 0.52 -6.07 0.09 8.8
tRNA 3ADD 47C!C:47J!C C:G WC [cWW][XIX] 10.56 55.92; 55.68 0.24 -13.11 0.39 17.37
tRNA 3ADD 47D!C:47I!C C:G WC [cWW][XIX] 10.73 53.37; 54.2 0.82 -2.0 0.04 5.6
tRNA 3ADD 50!C:64!C G:C WC [cWW][XIX] 10.53 54.23; 57.58 3.36 -1.59 0.09 10.66
tRNA 3ADD 51!C:63!C G:C WC [cWW][XIX] 10.66 52.73; 56.02 3.29 0.85 0.21 2.99
tRNA 3ADD 52!C:62!C G:C WC [cWW][XIX] 10.57 54.92; 56.02 1.1 -3.5 0.07 10.42
tRNA 3ADD 53!C:61!C G:C WC [cWW][XIX] 10.58 56.7; 54.9 1.8 -5.46 0.57 17.8
tRNA 3ADD 54!C:58!C U:A rH_1 [tWH][XXIV] 9.62 32.74; 23.37 9.38 168.3 0.1 9.92
tRNA 3ADD 55!C:57!C U:A S(sb:O2*-N7) [---][-] 6.67 80.32; 39.37 40.95 -170.28 1.17 32.19
tRNA 3ADD 1!D:72!D G:C WC [cWW][XIX] 10.54 56.64; 56.95 0.31 -10.85 0.13 16.09
tRNA 3ADD 2!D:71!D G:C WC [cWW][XIX] 10.72 52.66; 53.5 0.84 -11.12 0.1 10.38
tRNA 3ADD 3!D:70!D C:G WC [cWW][XIX] 10.82 54.75; 52.21 2.54 -9.04 0.05 10.77
tRNA 3ADD 4!D:69!D C:G WC [cWW][XIX] 10.75 54.25; 52.7 1.55 -2.78 0.16 8.87
tRNA 3ADD 5!D:68!D G:C WC [cWW][XIX] 10.6 57.9; 56.24 1.66 -0.8 0.02 4.48
tRNA 3ADD 5A!D:67B!D C:G WC [cWW][XIX] 10.66 53.33; 53.55 0.22 -14.11 0.17 14.78
tRNA 3ADD 5B!D:67A!D C:G WC [cWW][XIX] 10.61 54.17; 55.75 1.58 -3.5 0.0 9.44
tRNA 3ADD 6!D:67!D G:C WC [cWW][XIX] 10.64 54.31; 54.02 0.3 -5.2 0.05 8.34
tRNA 3ADD 7!D:66!D C:G WC [cWW][XIX] 10.73 54.51; 54.09 0.42 -1.17 0.28 6.77
tRNA 3ADD 10!D:25!D C:G WC [cWW][XIX] 10.83 53.61; 53.55 0.05 -2.57 0.04 8.02
tRNA 3ADD 11!D:24!D C:G WC [cWW][XIX] 10.57 55.02; 54.62 0.39 -2.62 0.21 11.49
tRNA 3ADD 12!D:23!D G:C WC [cWW][XIX] 10.68 53.81; 55.23 1.42 -1.77 0.0 10.3
tRNA 3ADD 13!D:22!D G:C WC [cWW][XIX] 10.78 55.42; 54.61 0.8 -3.3 0.15 8.96
tRNA 3ADD 14!D:21!D G:C WC [cWW][XIX] 10.65 55.94; 55.73 0.22 -2.21 0.49 11.7
tRNA 3ADD 15!D:20A!D G:C WC [cWW][XIX] 10.72 53.76; 54.78 1.02 0.81 0.1 6.09
tRNA 3ADD 16!D:59!D U:U rWb [tWW][XIII] 8.43 39.71; 48.73 9.02 -175.91 0.17 6.65
tRNA 3ADD 18!D:55!D G:U fS_1 [tSW][-] 8.29 30.8; 122.1 91.3 -116.38 0.93 21.49
tRNA 3ADD 19!D:56!D G:C WC [cWW][XIX] 10.74 53.54; 53.85 0.32 -20.01 0.85 27.6
tRNA 3ADD 19!D:20!D G:U pS* [cHS][-] 6.26 134.79; 61.02 73.78 16.51 0.58 14.51
tRNA 3ADD 26!D:44!D G:C WC [cWW][XIX] 10.85 54.0; 53.38 0.63 -7.1 0.04 12.07
tRNA 3ADD 27!D:43!D C:G WC [cWW][XIX] 10.6 55.78; 57.62 1.84 -12.43 0.32 18.59
tRNA 3ADD 28!D:42!D C:G WC [cWW][XIX] 10.77 53.74; 54.74 1.0 -9.98 0.28 15.98
tRNA 3ADD 29!D:41!D G:C WC [cWW][XIX] 10.67 55.42; 55.62 0.2 0.12 0.13 9.72
tRNA 3ADD 30!D:40!D G:C WC [cWW][XIX] 10.6 55.22; 56.46 1.24 0.18 0.42 10.06
tRNA 3ADD 31!D:39!D A:U WC [cWW][XX] 10.73 54.68; 53.46 1.21 -8.73 0.22 21.4
tRNA 3ADD 32!D:38!D C:A Wb [cWW][-] 9.46 88.71; 43.46 45.25 -4.12 0.18 17.6
tRNA 3ADD 33!D:36!D U:A rH*_1 [---][-] 12.71 15.41; 20.6 5.18 -165.59 1.3 76.47
tRNA 3ADD 45!D:48!D G:C WC [cWW][XIX] 10.63 53.51; 55.45 1.94 4.93 0.31 17.19
tRNA 3ADD 46!D:47N!D C:G WC [cWW][XIX] 10.77 53.03; 53.98 0.95 -5.92 0.14 11.47
tRNA 3ADD 47!D:47M!D G:C WC [cWW][XIX] 10.8 54.55; 53.69 0.86 -1.99 0.01 7.96
tRNA 3ADD 47A!D:47L!D C:G WC [cWW][XIX] 10.7 53.22; 54.51 1.29 -4.27 0.34 10.39
tRNA 3ADD 47B!D:47K!D C:G WC [cWW][XIX] 10.67 56.95; 53.91 3.05 3.93 0.26 8.34
tRNA 3ADD 47C!D:47J!D C:G WC [cWW][XIX] 10.67 54.29; 55.33 1.04 2.21 0.13 5.42
tRNA 3ADD 47D!D:47I!D C:G WC [cWW][XIX] 10.74 53.29; 52.91 0.38 7.93 0.2 8.49
tRNA 3ADD 50!D:64!D G:C WC [cWW][XIX] 10.54 56.08; 58.19 2.11 -5.64 0.37 15.87
tRNA 3ADD 51!D:63!D G:C WC [cWW][XIX] 10.6 54.26; 56.65 2.39 0.72 0.01 3.91
tRNA 3ADD 52!D:62!D G:C WC [cWW][XIX] 10.72 56.41; 54.62 1.79 2.07 0.03 6.23
tRNA 3ADD 53!D:61!D G:C WC [cWW][XIX] 10.58 55.04; 55.86 0.82 2.7 0.29 9.95
tRNA 3ADD 54!D:58!D U:A rH_1 [tWH][XXIV] 10.2 28.06; 16.11 11.95 -175.32 0.38 6.37
tRNA 3ADD 55!D:57!D U:A S(sb:O2*-N7) [---][-] 6.53 89.52; 40.81 48.71 -166.94 1.27 30.31