Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3AKZ BPC Identified: 131 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3AKZ 2!F:71!F G:C WC [cWW][XIX] 10.5 54.15; 56.92 2.77 -1.33 0.67 15.74
tRNA 3AKZ 3!F:70!F G:C WC [cWW][XIX] 10.7 53.26; 54.74 1.48 -2.5 0.14 4.74
tRNA 3AKZ 4!F:69!F G:C WC [cWW][XIX] 10.73 52.88; 54.7 1.82 -4.91 0.03 15.64
tRNA 3AKZ 5!F:68!F A:U WC [cWW][XX] 10.26 58.0; 57.87 0.14 -4.16 0.11 15.2
tRNA 3AKZ 6!F:67!F G:C WC [cWW][XIX] 10.66 55.19; 54.55 0.63 -5.77 0.48 19.42
tRNA 3AKZ 7!F:66!F G:C WC [cWW][XIX] 10.87 51.16; 53.01 1.85 0.41 0.17 7.25
tRNA 3AKZ 8!F:21!F U:A fS(sb:O2*-N1) [tSW][-] 7.98 96.0; 62.43 33.57 164.65 0.21 18.42
tRNA 3AKZ 8!F:14!F U:A rH_1 [tWH][XXIV] 10.22 34.0; 22.2 11.8 166.74 0.64 14.41
tRNA 3AKZ 9!F:24!F C:A rS* [tHH][-] 11.91 39.89; 9.47 30.42 -70.82 1.84 22.35
tRNA 3AKZ 9!F:23!F C:G rS*_1 [tHH][-] 11.93 16.74; 9.07 7.67 129.42 0.69 15.33
tRNA 3AKZ 10!F:45!F G:G pS_1 [cSH][-] 8.66 35.61; 128.13 92.52 -17.52 0.19 15.52
tRNA 3AKZ 10!F:25!F G:C WC [cWW][XIX] 10.72 52.6; 54.58 1.98 1.9 0.08 10.34
tRNA 3AKZ 11!F:24!F U:A WC [cWW][XX] 10.58 55.35; 54.05 1.29 -6.36 0.01 9.51
tRNA 3AKZ 12!F:23!F C:G WC [cWW][XIX] 10.85 52.12; 52.3 0.18 5.41 0.47 2.72
tRNA 3AKZ 13!F:22!F U:G Wb [cWW][XXVIII] 10.69 67.9; 43.73 24.17 -7.51 0.07 18.04
tRNA 3AKZ 15!F:48!F A:U srWC [---][-] 11.35 34.39; 57.14 22.75 -177.16 0.8 1.55
tRNA 3AKZ 18!F:55!F G:U fS_1 [tSW][-] 9.76 27.88; 106.95 79.08 -148.72 0.93 27.82
tRNA 3AKZ 19!F:56!F G:C WC [cWW][XIX] 10.26 58.09; 55.39 2.7 -33.88 0.71 48.04
tRNA 3AKZ 22!F:46!F G:G rH_1 [tWH][VII] 11.74 22.43; 27.82 5.39 -170.52 0.01 13.86
tRNA 3AKZ 27!F:43!F G:C WC [cWW][XIX] 10.6 53.38; 55.47 2.09 -15.13 0.64 23.68
tRNA 3AKZ 28!F:42!F C:G WC [cWW][XIX] 10.69 54.28; 53.76 0.52 -5.51 0.19 15.36
tRNA 3AKZ 29!F:41!F G:C WC [cWW][XIX] 10.85 53.57; 52.62 0.95 -4.87 0.55 14.81
tRNA 3AKZ 30!F:40!F G:C WC [cWW][XIX] 10.89 51.19; 51.44 0.25 6.92 0.11 9.33
tRNA 3AKZ 31!F:39!F A:U WC [cWW][XX] 10.17 59.51; 58.6 0.92 -14.53 0.02 20.32
tRNA 3AKZ 49!F:65!F G:C WC [cWW][XIX] 10.72 52.89; 54.7 1.81 -8.07 0.09 11.35
tRNA 3AKZ 50!F:64!F G:C WC [cWW][XIX] 10.7 54.23; 54.75 0.52 2.27 0.11 6.04
tRNA 3AKZ 51!F:63!F A:U WC [cWW][XX] 10.63 53.23; 54.25 1.02 -6.17 0.04 15.62
tRNA 3AKZ 52!F:62!F G:C WC [cWW][XIX] 10.8 52.59; 54.05 1.46 -2.32 0.01 6.99
tRNA 3AKZ 53!F:61!F G:C WC [cWW][XIX] 10.61 55.84; 56.32 0.48 -6.0 0.2 16.83
tRNA 3AKZ 54!F:58!F U:A rH_1 [tWH][XXIV] 10.11 27.83; 22.37 5.46 166.26 0.06 7.51
tRNA 3AKZ 55!F:57!F U:G S(sb:O2*-N7)_1 [---][-] 6.55 71.05; 42.82 28.22 -167.2 1.72 29.17
tRNA 3AKZ 2!H:71!H G:C WC [cWW][XIX] 10.52 54.16; 55.04 0.88 6.73 0.9 4.98
tRNA 3AKZ 3!H:70!H G:C WC [cWW][XIX] 10.69 53.68; 55.24 1.56 -3.21 0.47 15.29
tRNA 3AKZ 4!H:69!H G:C WC [cWW][XIX] 10.64 53.88; 54.62 0.74 -7.09 0.2 22.31
tRNA 3AKZ 5!H:68!H A:U WC [cWW][XX] 10.27 58.68; 57.31 1.37 -3.8 0.42 17.12
tRNA 3AKZ 6!H:67!H G:C WC [cWW][XIX] 10.61 55.73; 55.7 0.03 -2.66 0.19 18.36
tRNA 3AKZ 7!H:66!H G:C WC [cWW][XIX] 10.84 51.57; 52.76 1.19 -0.75 0.06 2.82
tRNA 3AKZ 8!H:46!H U:G rpS [cSS][-] 5.68 133.6; 98.81 34.8 -64.22 2.05 12.66
tRNA 3AKZ 8!H:21!H U:A fS(sb:O2*-N1) [tSW][-] 8.11 102.33; 61.97 40.36 169.61 0.67 23.42
tRNA 3AKZ 8!H:14!H U:A rH_1 [tWH][XXIV] 9.75 37.81; 20.42 17.39 178.27 0.39 14.57
tRNA 3AKZ 9!H:24!H C:A rS* [tHH][-] 11.94 41.0; 10.02 30.98 -82.8 2.05 14.22
tRNA 3AKZ 9!H:23!H C:G rS*_1 [tHH][-] 11.86 18.28; 7.41 10.88 142.07 0.26 9.12
tRNA 3AKZ 10!H:45!H G:G pS_1 [cSH][-] 8.46 40.37; 122.72 82.35 -10.79 0.09 13.52
tRNA 3AKZ 10!H:25!H G:C WC [cWW][XIX] 10.72 52.75; 54.14 1.39 -5.33 0.23 10.35
tRNA 3AKZ 11!H:24!H U:A WC [cWW][XX] 10.51 55.08; 53.12 1.96 -11.34 0.02 13.85
tRNA 3AKZ 12!H:23!H C:G WC [cWW][XIX] 10.78 53.5; 53.62 0.12 1.39 0.09 0.43
tRNA 3AKZ 13!H:22!H U:G Wb [cWW][XXVIII] 10.58 56.9; 45.39 11.52 -0.44 0.27 14.07
tRNA 3AKZ 14!H:21!H A:A pfS [cSW][-] 9.65 29.25; 126.23 96.97 -10.02 0.27 9.8
tRNA 3AKZ 15!H:48!H A:U rWC [tWW][XXI] 11.17 34.61; 43.35 8.74 177.43 0.03 6.51
tRNA 3AKZ 18!H:55!H G:U fS_2 [---][-] 9.05 40.82; 111.16 70.35 -132.39 0.15 30.28
tRNA 3AKZ 19!H:56!H G:C WC [cWW][XIX] 10.09 52.92; 50.39 2.53 -33.02 2.28 69.88
tRNA 3AKZ 22!H:46!H G:G rH_1 [tWH][VII] 11.76 22.55; 30.61 8.06 -163.5 0.18 19.49
tRNA 3AKZ 27!H:43!H G:C WC [cWW][XIX] 10.47 54.94; 56.65 1.71 -14.91 0.05 25.45
tRNA 3AKZ 28!H:42!H C:G WC [cWW][XIX] 10.66 55.15; 54.68 0.47 -5.4 0.12 16.34
tRNA 3AKZ 29!H:41!H G:C WC [cWW][XIX] 10.68 54.99; 54.66 0.33 -3.76 0.54 21.65
tRNA 3AKZ 30!H:40!H G:C WC [cWW][XIX] 10.8 52.92; 53.01 0.09 -3.31 0.42 12.9
tRNA 3AKZ 31!H:39!H A:U WC [cWW][XX] 10.43 56.61; 55.47 1.14 -6.52 0.43 16.32
tRNA 3AKZ 32!H:38!H C:A Wb [cWW][-] 10.11 80.01; 49.63 30.38 -4.64 0.05 16.31
tRNA 3AKZ 49!H:65!H G:C WC [cWW][XIX] 10.78 52.3; 53.41 1.11 -6.03 0.21 17.91
tRNA 3AKZ 50!H:64!H G:C WC [cWW][XIX] 10.63 54.58; 55.26 0.68 0.65 0.35 17.34
tRNA 3AKZ 51!H:63!H A:U WC [cWW][XX] 10.79 52.46; 52.26 0.2 -16.52 0.12 23.59
tRNA 3AKZ 52!H:62!H G:C WC [cWW][XIX] 10.66 53.58; 55.87 2.29 3.05 0.01 12.94
tRNA 3AKZ 53!H:61!H G:C WC [cWW][XIX] 10.66 55.04; 54.7 0.34 -7.22 0.59 19.59
tRNA 3AKZ 54!H:58!H U:A rH_1 [tWH][XXIV] 9.7 36.1; 20.59 15.51 159.59 1.13 25.43
tRNA 3AKZ 55!H:57!H U:G S(sb:O2*-N7)_1 [---][-] 6.3 72.46; 40.37 32.09 -172.62 1.32 26.29
tRNA 3AKZ 1!G:72!G U:A WC [cWW][XX] 10.73 49.58; 51.95 2.37 -18.7 0.53 31.75
tRNA 3AKZ 2!G:71!G G:C WC [cWW][XIX] 10.71 53.04; 53.06 0.02 -1.35 0.25 15.34
tRNA 3AKZ 3!G:70!G G:C WC [cWW][XIX] 10.76 53.48; 53.76 0.28 -5.06 0.42 15.43
tRNA 3AKZ 4!G:69!G G:C WC [cWW][XIX] 10.81 51.64; 52.82 1.18 4.52 0.03 10.25
tRNA 3AKZ 5!G:68!G A:U WC [cWW][XX] 10.47 57.09; 55.39 1.7 -1.64 0.0 14.83
tRNA 3AKZ 6!G:67!G G:C WC [cWW][XIX] 10.81 53.95; 52.8 1.15 -4.51 0.0 6.31
tRNA 3AKZ 7!G:66!G G:C WC [cWW][XIX] 10.9 51.16; 52.15 0.98 -0.61 0.08 6.9
tRNA 3AKZ 8!G:46!G U:G rpS [cSS][-] 6.07 129.18; 105.37 23.81 -69.56 1.44 26.16
tRNA 3AKZ 8!G:21!G U:A fS(sb:O2*-N1) [tSW][-] 8.3 94.32; 54.03 40.29 164.23 0.19 38.12
tRNA 3AKZ 8!G:14!G U:A rH_1 [tWH][XXIV] 9.98 30.9; 17.69 13.21 179.63 0.39 23.59
tRNA 3AKZ 9!G:24!G C:A rS* [tHH][-] 11.67 42.63; 10.3 32.33 -77.96 2.05 25.51
tRNA 3AKZ 9!G:23!G C:G rS*_1 [tHH][-] 11.88 17.39; 9.45 7.94 104.95 1.12 23.06
tRNA 3AKZ 10!G:45!G G:G pS_1 [cSH][-] 8.45 35.71; 125.58 89.87 -8.8 0.47 25.96
tRNA 3AKZ 10!G:25!G G:C WC [cWW][XIX] 10.66 53.15; 54.87 1.72 3.18 0.6 3.61
tRNA 3AKZ 11!G:24!G U:A WC [cWW][XX] 10.5 55.39; 53.79 1.59 -5.67 0.11 18.85
tRNA 3AKZ 12!G:23!G C:G WC [cWW][XIX] 10.74 54.56; 53.78 0.79 -1.7 0.25 8.46
tRNA 3AKZ 13!G:22!G U:G Wb [cWW][XXVIII] 10.53 66.4; 44.73 21.67 4.38 0.0 3.96
tRNA 3AKZ 14!G:21!G A:A pfS [cSW][-] 9.72 32.14; 118.63 86.49 -14.05 0.49 16.4
tRNA 3AKZ 15!G:48!G A:U srWC [---][-] 11.12 33.11; 52.76 19.64 170.34 1.06 9.52
tRNA 3AKZ 26!G:44!G G:U Wb [cWW][XXVIII] 11.12 38.08; 51.83 13.76 -31.43 0.33 43.8
tRNA 3AKZ 26!G:43!G G:C rH_2 [---][-] 13.58 23.98; 29.29 5.32 9.52 0.55 45.13
tRNA 3AKZ 27!G:43!G G:C WC [cWW][XIX] 10.74 50.52; 52.54 2.01 -25.44 0.15 30.09
tRNA 3AKZ 28!G:42!G C:G WC [cWW][XIX] 10.73 53.95; 53.41 0.54 -9.04 0.15 10.49
tRNA 3AKZ 29!G:41!G G:C WC [cWW][XIX] 10.75 53.9; 53.65 0.26 6.13 0.44 8.48
tRNA 3AKZ 30!G:40!G G:C WC [cWW][XIX] 10.82 52.34; 52.98 0.64 -0.57 0.16 6.67
tRNA 3AKZ 31!G:39!G A:U WC [cWW][XX] 10.48 55.93; 55.8 0.14 -12.53 0.29 22.1
tRNA 3AKZ 49!G:65!G G:C WC [cWW][XIX] 10.7 53.01; 54.13 1.13 -10.23 0.36 21.02
tRNA 3AKZ 50!G:64!G G:C WC [cWW][XIX] 10.73 54.39; 54.47 0.08 0.16 0.16 3.97
tRNA 3AKZ 51!G:63!G A:U WC [cWW][XX] 10.58 52.74; 54.68 1.93 -0.86 0.15 12.93
tRNA 3AKZ 52!G:62!G G:C WC [cWW][XIX] 10.94 50.16; 51.2 1.04 -10.91 0.15 12.8
tRNA 3AKZ 53!G:61!G G:C WC [cWW][XIX] 10.64 55.37; 54.73 0.65 -10.07 0.72 23.02
tRNA 3AKZ 54!G:58!G U:A rH_1 [tWH][XXIV] 9.66 43.96; 18.03 25.93 164.07 0.73 21.54
tRNA 3AKZ 1!E:72!E U:A WC [cWW][XX] 10.86 40.16; 50.4 10.24 -32.76 0.42 49.04
tRNA 3AKZ 2!E:71!E G:C WC [cWW][XIX] 10.75 52.36; 54.06 1.71 2.22 0.06 5.76
tRNA 3AKZ 3!E:70!E G:C WC [cWW][XIX] 10.7 53.09; 54.7 1.6 -11.46 0.04 15.41
tRNA 3AKZ 4!E:69!E G:C WC [cWW][XIX] 10.68 52.82; 54.29 1.46 -2.9 0.25 17.61
tRNA 3AKZ 5!E:68!E A:U WC [cWW][XX] 10.36 56.67; 56.8 0.13 -7.38 0.31 7.33
tRNA 3AKZ 6!E:67!E G:C WC [cWW][XIX] 10.73 54.58; 53.91 0.67 -4.56 0.22 15.23
tRNA 3AKZ 7!E:66!E G:C WC [cWW][XIX] 10.87 50.7; 52.57 1.87 -6.03 0.34 4.18
tRNA 3AKZ 8!E:21!E U:A fS(sb:O2*-N1) [tSW][-] 8.75 100.78; 53.52 47.26 166.33 0.93 31.07
tRNA 3AKZ 8!E:14!E U:A rH_1 [tWH][XXIV] 9.57 37.05; 22.78 14.27 159.93 0.57 21.66
tRNA 3AKZ 8!E:13!E U:U rH_2 [---][-] 9.63 17.85; 28.79 10.94 -162.14 2.4 14.25
tRNA 3AKZ 9!E:23!E C:G rS*_1 [tHH][-] 11.7 15.21; 8.73 6.48 130.5 0.19 6.87
tRNA 3AKZ 10!E:45!E G:G pS_1 [cSH][-] 8.12 35.25; 132.56 97.31 -1.42 0.01 19.05
tRNA 3AKZ 10!E:25!E G:C WC [cWW][XIX] 10.65 53.4; 55.29 1.89 -5.06 0.31 11.17
tRNA 3AKZ 11!E:24!E U:A WC [cWW][XX] 10.61 54.04; 53.08 0.96 -13.97 0.51 22.13
tRNA 3AKZ 12!E:23!E C:G WC [cWW][XIX] 10.8 53.79; 53.71 0.08 2.82 0.02 5.15
tRNA 3AKZ 13!E:22!E U:G Wb [cWW][XXVIII] 11.16 50.68; 40.57 10.11 0.92 0.08 5.85
tRNA 3AKZ 14!E:21!E A:A pfS [cSW][-] 9.7 32.87; 114.71 81.84 1.77 0.02 12.85
tRNA 3AKZ 15!E:48!E A:U rWC [tWW][XXI] 10.86 30.12; 40.93 10.81 179.99 0.88 3.46
tRNA 3AKZ 18!E:55!E G:U fS_1 [tSW][-] 9.33 31.7; 109.63 77.93 -121.65 0.36 32.39
tRNA 3AKZ 19!E:56!E G:C WC [cWW][XIX] 10.73 48.18; 40.62 7.56 -40.64 1.64 68.26
tRNA 3AKZ 22!E:46!E G:G rH_1 [tWH][VII] 12.09 26.38; 27.28 0.9 177.95 0.4 1.3
tRNA 3AKZ 26!E:44!E G:U WC [---][-] 11.0 52.32; 48.4 3.91 -41.66 0.47 46.01
tRNA 3AKZ 27!E:43!E G:C WC [cWW][XIX] 10.73 51.66; 52.69 1.02 -17.59 0.06 23.02
tRNA 3AKZ 28!E:42!E C:G WC [cWW][XIX] 10.74 53.1; 52.5 0.6 -8.12 0.38 15.11
tRNA 3AKZ 29!E:41!E G:C WC [cWW][XIX] 10.78 53.33; 53.65 0.32 -10.3 0.15 16.23
tRNA 3AKZ 30!E:40!E G:C WC [cWW][XIX] 10.77 52.37; 53.73 1.35 -9.52 0.06 12.67
tRNA 3AKZ 31!E:39!E A:U WC [cWW][XX] 10.34 57.35; 57.49 0.14 -8.95 0.03 11.15
tRNA 3AKZ 49!E:65!E G:C WC [cWW][XIX] 10.61 53.75; 55.62 1.87 -6.89 0.13 15.5
tRNA 3AKZ 50!E:64!E G:C WC [cWW][XIX] 10.69 54.76; 53.97 0.79 -5.07 0.65 16.32
tRNA 3AKZ 51!E:63!E A:U WC [cWW][XX] 10.83 51.12; 52.3 1.18 1.0 0.17 1.52
tRNA 3AKZ 52!E:62!E G:C WC [cWW][XIX] 10.72 53.22; 54.56 1.34 -4.06 0.2 7.99
tRNA 3AKZ 53!E:61!E G:C WC [cWW][XIX] 10.54 56.37; 55.52 0.85 -7.9 0.21 23.65
tRNA 3AKZ 54!E:58!E U:A rH_1 [tWH][XXIV] 9.94 37.47; 18.09 19.38 158.61 0.81 24.53
tRNA 3AKZ 55!E:57!E U:G S(sb:O2*-N7)_1 [---][-] 6.63 78.56; 35.36 43.2 -159.61 1.99 34.72