Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3AM1 BPC Identified: 36 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3AM1 1!B:79!B G:C WC [cWW][XIX] 10.4 55.68; 61.24 5.57 -11.92 0.54 17.79
tRNA 3AM1 2!B:78!B G:C WC [cWW][XIX] 10.65 52.27; 52.25 0.02 -10.54 0.41 15.14
tRNA 3AM1 3!B:77!B C:G WC [cWW][XIX] 10.55 53.34; 54.47 1.13 -10.91 0.34 13.72
tRNA 3AM1 4!B:76!B G:C WC [cWW][XIX] 10.65 50.33; 54.2 3.87 -10.58 0.14 12.56
tRNA 3AM1 5!B:75!B C:G WC [cWW][XIX] 10.61 51.51; 59.0 7.49 -5.03 0.03 9.14
tRNA 3AM1 6!B:74!B G:U Wb [cWW][XXVIII] 9.97 50.4; 66.27 15.87 -13.86 0.01 15.52
tRNA 3AM1 7!B:73!B G:C WC [cWW][XIX] 10.51 56.85; 51.64 5.21 -12.17 0.05 17.63
tRNA 3AM1 8!B:72!B G:C WC [cWW][XIX] 10.52 57.26; 52.38 4.88 -4.15 0.42 14.44
tRNA 3AM1 9!B:71!B G:C WC [cWW][XIX] 10.67 58.3; 51.83 6.47 -10.39 0.64 13.75
tRNA 3AM1 12!B:29!B C:G WC [cWW][XIX] 10.28 55.5; 63.18 7.68 -9.56 0.06 18.65
tRNA 3AM1 13!B:28!B C:G WC [cWW][XIX] 10.61 55.29; 59.02 3.74 -5.43 0.14 10.47
tRNA 3AM1 14!B:27!B G:C WC [cWW][XIX] 10.26 57.94; 55.28 2.66 2.82 0.97 31.15
tRNA 3AM1 15!B:26!B G:C WC [cWW][XIX] 10.48 59.94; 55.73 4.21 -5.47 0.35 15.41
tRNA 3AM1 16!B:25!B G:C WC [cWW][XIX] 10.67 56.46; 54.03 2.43 -3.68 0.2 23.29
tRNA 3AM1 17!B:24!B C:G WC [cWW][XIX] 10.69 55.03; 55.76 0.74 1.76 0.04 7.26
tRNA 3AM1 18!B:23!B U:A WC [cWW][XX] 10.89 55.38; 51.82 3.56 -3.68 0.2 13.12
tRNA 3AM1 19!B:65!B U:U rWb [tWW][XIII] 8.57 42.93; 44.45 1.52 177.44 0.69 20.0
tRNA 3AM1 20!B:61!B G:U fS_1 [tSW][-] 8.61 31.23; 109.28 78.05 -128.43 0.19 28.05
tRNA 3AM1 21!B:62!B G:C WC [cWW][XIX] 10.66 59.09; 47.58 11.51 -23.86 0.56 40.6
tRNA 3AM1 21!B:22!B G:U pS* [cHS][-] 6.73 140.73; 51.8 88.92 23.93 0.03 32.84
tRNA 3AM1 30!B:39!B G:C Wb* [---][-] 11.21 61.11; 45.83 15.28 1.3 0.15 6.6
tRNA 3AM1 31!B:38!B G:C WC [cWW][XIX] 9.99 58.34; 57.81 0.54 -8.01 0.08 19.41
tRNA 3AM1 32!B:37!B C:G WC [cWW][XIX] 10.44 57.26; 51.29 5.96 -5.12 0.07 7.73
tRNA 3AM1 40!B:55!B G:C WC [cWW][XIX] 10.52 53.17; 57.64 4.47 8.36 0.72 19.8
tRNA 3AM1 41!B:54!B A:U WC [cWW][XX] 10.23 58.44; 58.9 0.46 -3.47 0.17 11.25
tRNA 3AM1 42!B:53!B G:C WC [cWW][XIX] 10.37 54.22; 59.49 5.27 -1.97 0.36 6.62
tRNA 3AM1 43!B:52!B G:C WC [cWW][XIX] 10.66 56.81; 52.59 4.22 -2.6 0.22 7.31
tRNA 3AM1 44!B:51!B G:C WC [cWW][XIX] 10.56 56.0; 55.19 0.81 -1.02 0.16 10.54
tRNA 3AM1 45!B:50!B C:G WC [cWW][XIX] 10.84 57.5; 51.13 6.37 2.89 0.28 8.47
tRNA 3AM1 46!B:49!B G:A S [tSH][XI] 9.36 101.84; 7.87 93.97 -135.89 0.02 3.96
tRNA 3AM1 56!B:70!B G:C WC [cWW][XIX] 10.82 57.75; 51.29 6.46 -6.3 0.15 10.64
tRNA 3AM1 57!B:69!B G:C WC [cWW][XIX] 10.72 59.19; 50.09 9.1 8.88 0.34 7.23
tRNA 3AM1 58!B:68!B G:C WC [cWW][XIX] 10.65 56.77; 58.51 1.74 -3.56 0.42 23.87
tRNA 3AM1 59!B:67!B G:C WC [cWW][XIX] 10.54 54.78; 58.61 3.83 6.27 0.01 5.16
tRNA 3AM1 60!B:64!B U:A rH_1 [tWH][XXIV] 9.58 30.41; 23.04 7.37 164.49 0.3 11.12
tRNA 3AM1 61!B:63!B U:G S(sb:O2*-N7)_1 [---][-] 6.58 80.37; 41.5 38.87 -160.76 0.59 37.31