Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B31 BPC Identified: 18 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 3B31 6174!A:6202!A G:C WC [cWW][XIX] 10.47 53.87; 58.29 4.43 -6.66 0.02 9.01
IRES_RNA 3B31 6175!A:6201!A G:C WC [cWW][XIX] 10.3 54.08; 64.87 10.79 -13.65 0.27 18.31
IRES_RNA 3B31 6176!A:6200!A U:A WC [cWW][XX] 10.23 53.71; 59.87 6.16 -12.35 0.33 19.09
IRES_RNA 3B31 6177!A:6199!A U:G Wb [cWW][XXVIII] 10.24 66.65; 44.57 22.08 -9.5 0.31 12.87
IRES_RNA 3B31 6178!A:6198!A A:U WC [cWW][XX] 10.28 52.54; 58.91 6.37 -8.79 0.06 12.56
IRES_RNA 3B31 6179!A:6197!A U:A WC [cWW][XX] 10.5 54.84; 56.42 1.57 -12.43 0.04 14.83
IRES_RNA 3B31 6180!A:6196!A U:A WC [cWW][XX] 10.23 60.44; 55.0 5.44 -16.18 0.09 18.19
IRES_RNA 3B31 6181!A:6195!A C:G WC [cWW][XIX] 10.89 54.62; 53.5 1.13 -0.97 0.57 12.55
IRES_RNA 3B31 6183!A:6194!A G:C WC [cWW][XIX] 10.46 52.77; 55.1 2.32 -13.38 0.28 19.8
IRES_RNA 3B31 6184!A:6193!A A:U WC [cWW][XX] 10.72 56.1; 52.0 4.1 -23.38 0.73 36.52
IRES_RNA 3B31 6186!A:6189!A U:G S(bp:N3-O2P)_1 [---][-] 8.99 75.58; 29.95 45.62 -153.03 1.46 26.63
IRES_RNA 3B31 6186!A:6188!A U:G S(sb:O2*-N7)_1 [---][-] 6.85 72.87; 42.85 30.03 -162.92 2.21 26.84
IRES_RNA 3B31 6187!A:6216!B A:U WC [cWW][XX] 10.63 59.93; 56.9 3.03 11.57 0.23 7.23
IRES_RNA 3B31 6188!A:6215!B G:C WC [cWW][XIX] 10.47 53.61; 56.74 3.13 -15.01 0.22 13.58
IRES_RNA 3B31 6189!A:6214!B G:C WC [cWW][XIX] 10.47 53.81; 57.5 3.69 -12.38 0.17 11.95
IRES_RNA 3B31 6190!A:6213!B U:A WC [cWW][XX] 10.45 56.05; 56.04 0.01 -8.26 0.04 10.57
IRES_RNA 3B31 6191!A:6212!B A:U WC [cWW][XX] 10.58 53.6; 54.55 0.95 -3.4 0.32 10.0
IRES_RNA 3B31 6192!A:6209!B G:A rS [tSS][-] 8.47 90.0; 54.63 35.38 148.35 1.47 45.35