Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B4A BPC Identified: 75 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3B4A -1!A:65!B A:G rS [tSS][-] 7.92 73.05; 86.07 13.02 149.17 1.54 43.5
Riboswitch 3B4A 2!A:64!B C:G WC [cWW][XIX] 10.72 56.73; 55.87 0.87 -0.43 0.08 4.37
Riboswitch 3B4A 3!A:63!B G:C WC [cWW][XIX] 10.71 54.56; 57.71 3.15 -1.34 0.0 4.86
Riboswitch 3B4A 4!A:62!B C:G WC [cWW][XIX] 10.67 53.3; 55.57 2.26 -4.46 0.0 9.84
Riboswitch 3B4A 5!A:61!B C:G WC [cWW][XIX] 10.6 56.99; 54.45 2.54 1.05 0.02 0.74
Riboswitch 3B4A 7!A:60!B G:C WC [cWW][XIX] 10.81 55.38; 56.44 1.06 3.65 0.12 2.44
Riboswitch 3B4A 7!A:34!B G:G S_1 [tSH][-] 11.51 9.28; 82.45 73.17 38.69 0.49 13.31
Riboswitch 3B4A 8!A:58!B G:A rS [tSS][-] 8.17 89.39; 64.41 24.99 128.43 1.73 57.22
Riboswitch 3B4A 8!A:33!B G:U Wb [cWW][XXVIII] 11.34 34.53; 58.24 23.7 -6.0 0.97 28.94
Riboswitch 3B4A 9!A:32!B A:U WC [cWW][XX] 10.65 51.91; 53.39 1.47 -12.48 0.55 20.51
Riboswitch 3B4A 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.84 107.47; 145.73 38.26 -34.78 1.36 4.89
Riboswitch 3B4A 10!A:31!B C:G WC [cWW][XIX] 10.59 53.61; 54.31 0.7 -10.9 0.01 18.86
Riboswitch 3B4A 11!A:116!B U:G rpS [cSS][-] 5.48 151.89; 103.51 48.39 -54.43 0.74 28.42
Riboswitch 3B4A 11!A:30!B U:A WC [cWW][XX] 10.57 53.98; 53.87 0.11 -9.66 0.39 14.58
Riboswitch 3B4A 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.17 166.85; 42.85 124.0 141.47 0.1 30.64
Riboswitch 3B4A 12!A:29!B U:A WC [cWW][XX] 10.43 55.01; 59.3 4.28 -11.22 0.13 13.31
Riboswitch 3B4A 13!A:28!B A:U WC [cWW][XX] 10.36 55.23; 57.04 1.81 -11.58 0.02 15.85
Riboswitch 3B4A 14!A:27!B A:U WC [cWW][XX] 11.1 54.53; 47.4 7.14 -8.15 0.17 13.03
Riboswitch 3B4A 15!A:26!B A:U WC [cWW][XX] 10.66 58.86; 51.85 7.01 -3.21 0.39 10.45
Riboswitch 3B4A 16!A:25!B G:C WC [cWW][XIX] 10.84 58.43; 54.45 3.98 -2.49 0.3 10.4
Riboswitch 3B4A 17!A:24!B C:G WC [cWW][XIX] 10.97 61.13; 54.02 7.11 0.74 0.27 3.3
Riboswitch 3B4A 18!A:23!B C:G WC_Mo [cWW][XIX] 11.56 60.59; 56.39 4.2 5.73 0.07 8.91
Riboswitch 3B4A 31!B:117!B G:A rS [tSS][-] 8.64 87.76; 57.53 30.22 163.93 1.02 19.93
Riboswitch 3B4A 32!B:118!B U:C rS(ss:O2*-O2*) [---][-] 5.69 160.84; 156.56 4.28 -137.04 0.37 16.85
Riboswitch 3B4A 34!B:60!B G:C pS*(bs:N4-O2*) [---][-] 9.21 143.47; 13.81 129.66 3.56 0.03 13.41
Riboswitch 3B4A 35!B:36!B A:C pS* [cHS][-] 6.79 144.23; 42.88 101.36 34.25 0.11 32.77
Riboswitch 3B4A 36!B:105!B C:A rpS(sb:O2*-N3) [cSS][-] 5.54 134.03; 92.23 41.79 -81.33 1.15 58.06
Riboswitch 3B4A 36!B:53!B C:G WC [cWW][XIX] 10.52 55.27; 54.86 0.41 -0.41 0.35 13.23
Riboswitch 3B4A 37!B:127!B G:A fS [tSW][X] 10.16 98.88; 45.09 53.79 112.84 1.04 59.05
Riboswitch 3B4A 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.75 141.92; 86.37 55.55 -70.43 1.47 59.22
Riboswitch 3B4A 37!B:52!B G:C WC [cWW][XIX] 10.44 51.36; 55.78 4.43 -5.14 0.32 8.98
Riboswitch 3B4A 38!B:51!B A:U WC [cWW][XX] 10.24 57.76; 55.21 2.56 -10.21 0.03 11.38
Riboswitch 3B4A 42!B:73!B C:G WC [cWW][XIX] 10.85 55.03; 56.66 1.63 -5.11 0.32 11.09
Riboswitch 3B4A 43!B:72!B A:U WC [cWW][XX] 10.42 56.71; 55.04 1.67 -2.17 0.47 11.36
Riboswitch 3B4A 44!B:71!B G:C WC [cWW][XIX] 10.61 58.55; 51.94 6.61 -4.71 0.06 10.37
Riboswitch 3B4A 45!B:70!B G:C WC [cWW][XIX] 10.5 52.5; 60.51 8.01 -7.19 0.05 11.47
Riboswitch 3B4A 46!B:69!B G:C WC [cWW][XIX] 11.14 49.81; 50.88 1.07 -18.04 0.73 30.19
Riboswitch 3B4A 47!B:68!B U:G Wb [cWW][XXVIII] 10.79 66.96; 31.31 35.66 -9.38 0.03 15.44
Riboswitch 3B4A 48!B:50!B U:A H_1 [cWH][XXIII] 7.9 70.47; 50.93 19.54 8.35 0.26 5.5
Riboswitch 3B4A 52!B:128!B C:G rpS [cSS][-] 5.55 133.22; 101.39 31.83 -89.28 0.35 55.25
Riboswitch 3B4A 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.61 144.12; 87.37 56.75 -71.92 2.01 59.67
Riboswitch 3B4A 53!B:104!B G:A fS [tSW][X] 10.21 101.52; 43.91 57.61 114.15 1.11 59.82
Riboswitch 3B4A 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.97 93.14; 52.25 40.88 171.31 0.52 38.96
Riboswitch 3B4A 54!B:59!B A:U rWC [tWW][XXI] 11.16 28.63; 38.36 9.74 -161.3 0.58 13.13
Riboswitch 3B4A 74!B:90!B C:G WC [cWW][XIX] 10.53 55.85; 61.9 6.05 -4.26 0.46 14.08
Riboswitch 3B4A 75!B:93!B G:A rS [tSS][-] 8.51 88.14; 57.34 30.8 151.97 1.39 47.61
Riboswitch 3B4A 75!B:89!B G:C WC [cWW][XIX] 10.59 60.41; 52.89 7.53 -8.5 0.1 23.24
Riboswitch 3B4A 76!B:88!B G:C WC [cWW][XIX] 11.01 54.59; 51.04 3.55 -2.67 0.58 1.39
Riboswitch 3B4A 77!B:87!B U:A WC [cWW][XX] 11.01 51.86; 50.25 1.6 -8.47 0.31 16.29
Riboswitch 3B4A 78!B:86!B C:G WC [cWW][XIX] 10.99 55.05; 53.69 1.36 -2.27 0.09 8.44
Riboswitch 3B4A 80!B:144!B U:A WC [cWW][XX] 11.54 52.81; 57.33 4.51 -0.58 0.38 9.28
Riboswitch 3B4A 81!B:143!B C:G WC [cWW][XIX] 11.35 52.79; 47.65 5.14 -6.75 0.16 19.16
Riboswitch 3B4A 82!B:142!B C:G WC [cWW][XIX] 10.8 53.78; 47.83 5.95 -3.27 0.2 10.7
Riboswitch 3B4A 83!B:141!B U:A WC [cWW][XX] 10.66 53.15; 57.58 4.43 -6.18 0.1 12.86
Riboswitch 3B4A 84!B:140!B G:C WC [cWW][XIX] 11.01 52.68; 49.4 3.29 -9.87 0.11 18.8
Riboswitch 3B4A 85!B:139!B C:G WC [cWW][XIX] 10.54 57.67; 56.33 1.34 -4.7 0.03 10.36
Riboswitch 3B4A 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.14 105.14; 152.8 47.65 -20.01 1.37 30.53
Riboswitch 3B4A 95!B:137!B A:G S [tSH][XI] 9.33 7.81; 99.96 92.14 0.94 0.01 5.91
Riboswitch 3B4A 96!B:136!B G:C Wb [---][-] 10.57 52.73; 68.21 15.48 -5.61 0.25 9.21
Riboswitch 3B4A 97!B:135!B G:C Wb [---][-] 10.57 53.79; 70.54 16.75 -1.46 0.05 8.73
Riboswitch 3B4A 98!B:134!B A:U WC [cWW][XX] 10.66 50.55; 54.18 3.62 -3.2 0.21 8.85
Riboswitch 3B4A 99!B:133!B C:G WC [cWW][XIX] 10.69 53.52; 56.08 2.56 -8.48 0.09 17.47
Riboswitch 3B4A 100!B:132!B U:A WC [cWW][XX] 10.46 56.89; 57.06 0.17 -12.11 0.12 12.54
Riboswitch 3B4A 101!B:131!B G:C WC [cWW][XIX] 10.81 54.9; 54.01 0.9 -15.9 0.4 18.53
Riboswitch 3B4A 102!B:129!B G:A S [tSH][XI] 10.97 75.04; 23.1 51.94 171.97 0.7 13.7
Riboswitch 3B4A 105!B:126!B A:U rH_1 [tWH][XXIV] 10.05 15.83; 31.36 15.53 175.94 0.03 3.12
Riboswitch 3B4A 106!B:125!B A:A rH [tWH][V] 12.3 20.68; 21.83 1.15 125.82 0.09 17.72
Riboswitch 3B4A 107!B:124!B* A:C sWb [---][-]; rH_2_Mo [---][-] 11.18 7.03; 63.4 56.37 41.31 0.65 34.94
Riboswitch 3B4A 108!B:123!B C:G WC [cWW][XIX] 10.64 53.19; 53.17 0.03 -12.34 0.25 20.55
Riboswitch 3B4A 109!B:122!B C:G WC [cWW][XIX] 10.83 53.92; 53.88 0.03 -7.32 0.11 8.92
Riboswitch 3B4A 110!B:121!B A:U WC [cWW][XX] 10.56 55.46; 54.93 0.53 -8.08 0.02 10.97
Riboswitch 3B4A 111!B:120!B C:G WC [cWW][XIX] 10.55 55.32; 54.14 1.18 -7.11 0.03 17.97
Riboswitch 3B4A 112!B:119!B A:U WC [cWW][XX] 10.49 56.61; 52.01 4.61 -3.59 0.16 7.66
Riboswitch 3B4A 113!B:118!B G:C WC [cWW][XIX] 10.6 56.78; 54.31 2.47 3.22 0.2 4.88
Riboswitch 3B4A 114!B:117!B G:A S_mo [tSH][XI] 10.17 81.84; 21.21 60.63 -154.7 0.51 19.27