Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B4B BPC Identified: 76 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3B4B 2!A:64!B C:G WC [cWW][XIX] 10.53 54.68; 54.57 0.11 2.6 0.06 9.39
Riboswitch 3B4B 3!A:63!B G:C WC [cWW][XIX] 10.67 52.11; 56.09 3.98 0.76 0.2 6.23
Riboswitch 3B4B 4!A:62!B C:G WC [cWW][XIX] 10.66 55.66; 54.29 1.37 -4.51 0.1 13.04
Riboswitch 3B4B 5!A:61!B C:G WC [cWW][XIX] 10.73 54.92; 54.34 0.58 -1.2 0.27 7.57
Riboswitch 3B4B 7!A:60!B G:C WC [cWW][XIX] 10.64 55.98; 54.64 1.33 -1.42 0.06 4.34
Riboswitch 3B4B 7!A:34!B G:G S_1 [tSH][-] 11.45 6.72; 83.1 76.38 14.05 0.11 5.9
Riboswitch 3B4B 8!A:58!B G:A rS [tSS][-] 8.11 88.04; 59.22 28.82 130.82 1.08 56.39
Riboswitch 3B4B 8!A:33!B G:U Wb [cWW][XXVIII] 11.16 33.61; 60.2 26.59 -5.29 0.81 28.44
Riboswitch 3B4B 9!A:32!B A:U WC [cWW][XX] 10.42 55.8; 55.16 0.64 -10.9 0.72 22.65
Riboswitch 3B4B 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.83 107.54; 148.22 40.68 -35.54 1.97 2.25
Riboswitch 3B4B 10!A:31!B C:G WC [cWW][XIX] 10.44 54.97; 51.94 3.03 -9.63 0.2 20.6
Riboswitch 3B4B 11!A:116!B U:G rpS [cSS][-] 5.56 149.85; 100.03 49.81 -58.08 0.18 27.21
Riboswitch 3B4B 11!A:30!B U:A WC [cWW][XX] 10.54 55.37; 55.24 0.13 -10.84 0.09 14.22
Riboswitch 3B4B 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.29 165.53; 39.79 125.74 154.22 0.66 37.41
Riboswitch 3B4B 12!A:29!B U:A WC [cWW][XX] 10.42 55.89; 54.36 1.53 -8.61 0.06 13.41
Riboswitch 3B4B 13!A:28!B A:U H_1 [cWH][XXIII] 10.3 30.04; 56.9 26.87 -3.32 0.12 17.65
Riboswitch 3B4B 14!A:27!B A:U WC [cWW][XX] 10.52 57.58; 56.0 1.58 -9.43 0.4 14.85
Riboswitch 3B4B 15!A:26!B A:U WC [cWW][XX] 10.45 53.6; 57.61 4.01 -5.51 0.67 17.79
Riboswitch 3B4B 16!A:25!B G:C WC [cWW][XIX] 10.58 50.89; 59.29 8.4 -7.24 0.13 12.11
Riboswitch 3B4B 17!A:24!B C:G Wb [---][-] 10.41 64.46; 48.91 15.55 -10.17 0.04 16.06
Riboswitch 3B4B 18!A:23!B C:G Wb [---][-] 10.25 64.39; 48.83 15.57 -1.36 0.13 2.75
Riboswitch 3B4B 31!B:117!B G:A rS [tSS][-] 8.34 85.84; 59.56 26.28 161.1 0.79 21.35
Riboswitch 3B4B 32!B:118!B U:C rS(ss:O2*-O2*) [---][-] 5.85 161.14; 155.48 5.66 -143.35 0.52 21.08
Riboswitch 3B4B 35!B:36!B A:C pS* [cHS][-] 6.87 143.94; 40.69 103.24 37.33 0.08 31.81
Riboswitch 3B4B 36!B:105!B C:A rpS(sb:O2*-N3) [cSS][-] 5.36 133.32; 94.6 38.72 -78.29 1.18 59.36
Riboswitch 3B4B 36!B:53!B C:G WC [cWW][XIX] 10.52 56.27; 54.11 2.16 -1.84 0.23 14.01
Riboswitch 3B4B 37!B:127!B G:A fS [tSW][X] 10.01 101.01; 47.93 53.08 109.99 0.74 64.45
Riboswitch 3B4B 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.62 140.37; 89.1 51.26 -72.38 1.93 60.64
Riboswitch 3B4B 37!B:52!B G:C WC [cWW][XIX] 10.49 52.24; 56.08 3.84 -9.86 0.02 9.99
Riboswitch 3B4B 38!B:51!B A:U WC [cWW][XX] 10.23 59.09; 56.12 2.97 -9.55 0.01 12.68
Riboswitch 3B4B 42!B:73!B C:G WC [cWW][XIX] 10.72 54.64; 53.99 0.65 -9.12 0.02 12.95
Riboswitch 3B4B 43!B:72!B A:U WC [cWW][XX] 10.33 58.69; 56.6 2.09 -11.46 0.2 15.6
Riboswitch 3B4B 44!B:71!B G:C WC [cWW][XIX] 10.41 53.35; 56.31 2.96 -5.88 0.05 13.52
Riboswitch 3B4B 45!B:70!B G:C WC [cWW][XIX] 10.52 56.93; 54.02 2.9 -7.63 0.03 12.95
Riboswitch 3B4B 46!B:69!B G:C WC [cWW][XIX] 10.51 60.56; 52.4 8.16 -11.64 0.46 27.98
Riboswitch 3B4B 47!B:68!B U:G Wb [cWW][XXVIII] 10.71 66.72; 37.26 29.45 -6.78 0.0 16.61
Riboswitch 3B4B 48!B:50!B U:A H_1 [cWH][XXIII] 7.93 70.6; 50.45 20.15 5.96 0.01 5.28
Riboswitch 3B4B 52!B:128!B C:G rpS [cSS][-] 5.61 130.2; 99.94 30.26 -90.08 0.14 57.02
Riboswitch 3B4B 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.64 142.51; 88.81 53.69 -72.67 1.17 64.33
Riboswitch 3B4B 53!B:104!B G:A fS [tSW][X] 9.92 100.66; 44.16 56.5 116.06 0.89 60.5
Riboswitch 3B4B 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.74 96.02; 55.3 40.71 167.37 0.44 39.47
Riboswitch 3B4B 54!B:59!B A:U rWC [tWW][XXI] 11.17 31.45; 42.0 10.54 -167.04 0.1 8.04
Riboswitch 3B4B 74!B:90!B C:G WC [cWW][XIX] 10.63 53.46; 54.82 1.35 -5.64 0.39 12.72
Riboswitch 3B4B 75!B:93!B G:A rS [tSS][-] 8.04 86.3; 57.24 29.06 146.49 1.55 49.49
Riboswitch 3B4B 75!B:89!B G:C WC [cWW][XIX] 10.61 54.4; 55.45 1.04 -18.08 0.34 26.4
Riboswitch 3B4B 76!B:88!B G:C WC [cWW][XIX] 10.77 53.37; 53.61 0.24 -8.26 0.08 11.71
Riboswitch 3B4B 77!B:87!B U:A WC [cWW][XX] 10.48 54.77; 54.52 0.25 -14.59 0.21 19.11
Riboswitch 3B4B 78!B:86!B C:G WC [cWW][XIX] 10.67 53.66; 53.25 0.42 -6.2 0.37 13.13
Riboswitch 3B4B 79!B:81!B U:C H_2 [---][-] 9.19 90.47; 30.16 60.32 -39.45 2.42 56.4
Riboswitch 3B4B 80!B:144!B U:A WC [cWW][XX] 10.52 52.72; 56.63 3.91 -12.75 0.36 18.96
Riboswitch 3B4B 81!B:143!B C:G WC [cWW][XIX] 10.43 55.64; 52.76 2.89 -11.57 0.13 13.35
Riboswitch 3B4B 82!B:142!B C:G WC [cWW][XIX] 10.55 57.3; 55.38 1.91 -8.12 0.06 11.04
Riboswitch 3B4B 83!B:141!B U:A WC [cWW][XX] 10.4 55.81; 55.0 0.82 -8.73 0.01 14.68
Riboswitch 3B4B 84!B:140!B G:C WC [cWW][XIX] 10.49 53.76; 56.4 2.63 -2.79 0.03 6.51
Riboswitch 3B4B 85!B:139!B C:G WC [cWW][XIX] 10.62 55.38; 59.02 3.64 -5.42 0.28 13.83
Riboswitch 3B4B 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.78 103.88; 148.33 44.45 -41.6 1.3 23.86
Riboswitch 3B4B 90!B:91!B G:U pS* [cHS][-] 6.12 134.49; 56.36 78.13 49.55 1.2 45.19
Riboswitch 3B4B 95!B:137!B A:G S [tSH][XI] 9.71 10.23; 97.8 87.56 -9.49 0.52 11.82
Riboswitch 3B4B 96!B:136!B G:C WC [cWW][XIX] 10.51 56.97; 59.14 2.17 -4.14 0.04 13.72
Riboswitch 3B4B 97!B:135!B G:C WC [cWW][XIX] 10.51 53.78; 61.33 7.55 1.13 0.2 9.03
Riboswitch 3B4B 98!B:134!B A:U WC [cWW][XX] 10.31 59.67; 59.23 0.44 -4.04 0.02 9.06
Riboswitch 3B4B 99!B:133!B C:G WC [cWW][XIX] 10.58 55.61; 53.84 1.77 -8.15 0.1 15.63
Riboswitch 3B4B 100!B:132!B U:A WC [cWW][XX] 10.33 57.51; 57.52 0.02 -12.92 0.12 16.81
Riboswitch 3B4B 101!B:131!B G:C WC [cWW][XIX] 10.58 56.58; 57.05 0.47 -15.58 0.58 22.69
Riboswitch 3B4B 102!B:129!B G:A S(bp:N1-O2P)_2 [---][-] 10.66 77.4; 24.85 52.55 174.49 0.63 9.95
Riboswitch 3B4B 105!B:126!B A:U rH_1 [tWH][XXIV] 10.03 16.3; 30.68 14.38 161.28 0.01 3.38
Riboswitch 3B4B 106!B:125!B A:A rH [tWH][V] 12.04 21.56; 23.82 2.26 140.87 0.43 14.59
Riboswitch 3B4B 107!B:124!B A:C rH_1 [rWH][XXV] 10.97 7.76; 29.07 21.31 80.92 0.12 42.91
Riboswitch 3B4B 108!B:123!B C:G WC [cWW][XIX] 10.59 51.36; 59.43 8.07 -8.37 0.43 21.67
Riboswitch 3B4B 109!B:122!B C:G WC [cWW][XIX] 10.62 52.59; 54.73 2.15 -8.8 0.08 12.85
Riboswitch 3B4B 110!B:121!B A:U WC [cWW][XX] 10.59 55.53; 54.45 1.09 -10.11 0.17 11.33
Riboswitch 3B4B 111!B:120!B C:G WC [cWW][XIX] 10.47 58.67; 54.28 4.39 -9.02 0.13 20.14
Riboswitch 3B4B 112!B:119!B A:U WC [cWW][XX] 10.23 56.58; 60.0 3.41 -4.75 0.08 7.67
Riboswitch 3B4B 113!B:118!B G:C WC [cWW][XIX] 10.56 56.78; 57.16 0.38 6.36 0.21 4.02
Riboswitch 3B4B 114!B:117!B G:A S_mo [tSH][XI] 9.89 85.16; 20.2 64.96 -147.17 0.46 20.24
Riboswitch 3B4B 114!B:116!B G:G S(sb:O2*-N7)_1 [---][-] 7.27 82.2; 34.85 47.35 -172.86 2.57 30.66