Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B4C BPC Identified: 75 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3B4C 2!A:64!B C:G WC [cWW][XIX] 10.85 55.1; 57.02 1.92 -1.01 0.04 11.01
Riboswitch 3B4C 3!A:63!B G:C WC [cWW][XIX] 10.77 55.53; 50.25 5.28 4.48 0.44 9.93
Riboswitch 3B4C 4!A:62!B C:G WC [cWW][XIX] 10.53 51.98; 56.08 4.1 -2.23 0.23 15.73
Riboswitch 3B4C 5!A:61!B C:G WC [cWW][XIX] 10.53 61.2; 56.2 4.99 2.77 0.06 6.93
Riboswitch 3B4C 7!A:60!B G:C WC [cWW][XIX] 10.64 53.95; 57.64 3.69 7.44 0.54 4.47
Riboswitch 3B4C 7!A:34!B G:G S_1 [tSH][-] 11.37 10.85; 83.51 72.66 63.09 0.15 14.94
Riboswitch 3B4C 8!A:58!B G:A rS [tSS][-] 7.96 87.82; 64.06 23.76 130.83 1.8 59.47
Riboswitch 3B4C 8!A:33!B G:U Wb [cWW][XXVIII] 11.23 34.5; 58.42 23.91 -0.07 0.52 28.6
Riboswitch 3B4C 9!A:32!B A:U WC [cWW][XX] 10.55 53.83; 55.89 2.06 -9.55 0.45 18.15
Riboswitch 3B4C 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.7 111.49; 146.65 35.17 -30.29 1.62 2.87
Riboswitch 3B4C 10!A:31!B C:G WC [cWW][XIX] 10.3 58.62; 56.7 1.92 -8.51 0.28 18.56
Riboswitch 3B4C 11!A:116!B U:G rpS [cSS][-] 5.81 152.07; 102.01 50.06 -58.42 0.23 26.87
Riboswitch 3B4C 11!A:30!B U:A WC [cWW][XX] 10.32 58.23; 55.44 2.79 -15.31 0.35 25.79
Riboswitch 3B4C 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.34 161.15; 42.4 118.75 146.99 0.91 32.99
Riboswitch 3B4C 12!A:29!B U:A WC [cWW][XX] 10.39 60.64; 57.99 2.65 -6.61 0.07 11.86
Riboswitch 3B4C 13!A:28!B A:U WC [cWW][XX] 10.46 61.03; 54.04 6.99 -4.25 0.22 11.34
Riboswitch 3B4C 14!A:27!B A:U WC [cWW][XX] 10.73 57.28; 54.25 3.03 -0.78 1.9 22.34
Riboswitch 3B4C 15!A:27!B A:U Wb* [---][-] 8.47 84.34; 64.91 19.43 -9.2 2.12 4.93
Riboswitch 3B4C 15!A:26!B A:U WC [cWW][XX] 10.53 64.9; 52.55 12.35 -5.6 0.13 12.65
Riboswitch 3B4C 16!A:25!B G:C WC [cWW][XIX] 10.59 54.56; 56.2 1.64 5.85 0.35 11.89
Riboswitch 3B4C 17!A:24!B C:G WC [cWW][XIX] 11.13 49.71; 58.49 8.78 14.4 0.64 20.73
Riboswitch 3B4C 18!A:23!B C:G WC_mo [cWW][XIX] 11.57 50.71; 49.87 0.84 7.42 1.17 16.6
Riboswitch 3B4C 31!B:117!B G:A rS [tSS][-] 8.25 90.18; 56.77 33.41 162.07 1.1 21.04
Riboswitch 3B4C 32!B:118!B U:C rS(ss:O2*-O2*) [---][-] 5.69 164.26; 154.89 9.37 -140.29 0.14 23.84
Riboswitch 3B4C 34!B:60!B G:C pS*(bs:N4-O2*) [---][-] 9.11 144.86; 12.89 131.97 14.27 0.02 11.17
Riboswitch 3B4C 35!B:36!B A:C pS* [cHS][-] 6.9 140.93; 44.31 96.62 28.28 0.03 28.2
Riboswitch 3B4C 36!B:105!B C:A rS [tSS][-] 5.36 134.34; 94.99 39.35 -78.5 0.46 55.61
Riboswitch 3B4C 36!B:53!B C:G WC [cWW][XIX] 10.42 54.83; 52.33 2.5 2.31 0.28 11.29
Riboswitch 3B4C 37!B:127!B G:A fS [tSW][X] 10.11 96.64; 45.63 51.0 111.21 1.42 64.38
Riboswitch 3B4C 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.71 139.51; 89.04 50.46 -62.52 1.19 62.63
Riboswitch 3B4C 37!B:52!B G:C WC [cWW][XIX] 10.51 50.81; 55.69 4.87 -1.6 0.25 5.89
Riboswitch 3B4C 38!B:51!B A:U WC [cWW][XX] 10.35 57.73; 53.85 3.88 -6.98 0.06 7.79
Riboswitch 3B4C 42!B:73!B C:G WC [cWW][XIX] 10.64 60.25; 55.64 4.61 -8.91 0.74 24.58
Riboswitch 3B4C 43!B:72!B A:U WC [cWW][XX] 10.35 52.48; 61.99 9.5 -5.29 0.73 15.49
Riboswitch 3B4C 44!B:71!B G:C WC [cWW][XIX] 10.54 52.95; 54.39 1.44 -6.09 0.2 13.89
Riboswitch 3B4C 45!B:70!B G:C WC [cWW][XIX] 10.41 56.64; 54.9 1.74 -7.14 0.19 14.13
Riboswitch 3B4C 46!B:69!B G:C WC [cWW][XIX] 10.44 50.03; 55.37 5.35 -10.29 0.36 39.09
Riboswitch 3B4C 47!B:68!B U:G Wb [cWW][XXVIII] 10.91 61.38; 33.21 28.16 -2.29 0.62 21.99
Riboswitch 3B4C 48!B:50!B U:A H_1 [cWH][XXIII] 7.84 76.46; 48.83 27.63 5.98 0.62 2.22
Riboswitch 3B4C 52!B:128!B C:G rpS [cSS][-] 5.33 133.09; 100.14 32.95 -88.86 0.15 55.6
Riboswitch 3B4C 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.7 140.35; 85.91 54.43 -71.79 1.96 65.48
Riboswitch 3B4C 53!B:104!B G:A fS [tSW][X] 10.06 98.66; 43.79 54.87 115.17 0.77 62.86
Riboswitch 3B4C 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.96 95.22; 54.35 40.88 164.83 0.34 36.76
Riboswitch 3B4C 54!B:59!B A:U rWC [tWW][XXI] 11.15 29.68; 39.63 9.95 -156.17 0.39 11.5
Riboswitch 3B4C 74!B:90!B C:G WC [cWW][XIX] 10.71 56.31; 54.69 1.62 -8.92 1.45 37.22
Riboswitch 3B4C 75!B:93!B G:A rS [tSS][-] 8.39 84.31; 55.85 28.46 145.48 1.61 60.36
Riboswitch 3B4C 75!B:89!B G:C WC [cWW][XIX] 10.69 55.2; 52.41 2.79 -16.96 0.06 25.66
Riboswitch 3B4C 76!B:88!B G:C WC [cWW][XIX] 10.94 59.92; 44.48 15.44 -6.0 0.8 4.09
Riboswitch 3B4C 77!B:87!B U:A WC [cWW][XX] 10.78 54.16; 51.44 2.72 -12.16 0.0 19.34
Riboswitch 3B4C 78!B:86!B C:G Wb* [---][-] 12.66 33.11; 57.16 24.04 26.5 0.55 24.95
Riboswitch 3B4C 81!B:143!B C:G WC [cWW][XIX] 10.94 52.13; 51.73 0.4 12.96 1.04 45.81
Riboswitch 3B4C 82!B:142!B C:G Wb [---][-] 10.91 56.74; 37.22 19.52 6.46 0.91 7.77
Riboswitch 3B4C 83!B:141!B U:A WC [cWW][XX] 10.42 55.1; 61.74 6.64 -18.59 0.67 16.93
Riboswitch 3B4C 84!B:140!B G:C Wb [---][-] 11.14 46.7; 59.89 13.19 -3.17 0.69 14.67
Riboswitch 3B4C 85!B:139!B C:G WC [cWW][XIX] 10.47 52.79; 55.46 2.68 -11.02 0.4 32.08
Riboswitch 3B4C 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.41 103.13; 148.06 44.93 -37.0 1.05 35.46
Riboswitch 3B4C 90!B:91!B G:U pS* [cHS][-] 5.97 135.55; 56.19 79.36 54.61 1.46 57.46
Riboswitch 3B4C 95!B:137!B A:G S [tSH][XI] 9.79 11.08; 96.36 85.28 -29.23 0.11 15.17
Riboswitch 3B4C 96!B:136!B G:C WC [cWW][XIX] 10.57 55.66; 58.59 2.93 -6.41 0.02 13.67
Riboswitch 3B4C 97!B:135!B G:C WC [cWW][XIX] 10.72 49.86; 57.59 7.73 6.22 0.3 9.18
Riboswitch 3B4C 98!B:134!B A:U WC [cWW][XX] 10.33 48.97; 62.39 13.42 -0.65 0.15 4.24
Riboswitch 3B4C 99!B:133!B C:G WC [cWW][XIX] 10.4 56.65; 52.0 4.64 -5.89 0.15 17.46
Riboswitch 3B4C 100!B:132!B U:A WC [cWW][XX] 10.33 60.71; 57.25 3.46 -11.27 0.03 12.67
Riboswitch 3B4C 101!B:131!B G:C WC [cWW][XIX] 10.66 53.02; 52.97 0.04 -13.91 0.61 21.51
Riboswitch 3B4C 102!B:129!B* G:A S [tSH][XI]; S(bp:N1-O2P)_2 [---][-] 10.91 78.96; 24.07 54.89 177.32 0.43 9.22
Riboswitch 3B4C 105!B:126!B A:U rH_1 [tWH][XXIV] 10.07 13.63; 32.51 18.89 158.57 0.17 6.82
Riboswitch 3B4C 106!B:125!B A:A rH [tWH][V] 11.98 23.15; 22.03 1.12 145.16 0.55 20.78
Riboswitch 3B4C 107!B:124!B A:C rH_1 [rWH][XXV] 10.95 8.69; 29.15 20.46 77.47 0.03 41.78
Riboswitch 3B4C 108!B:123!B C:G WC [cWW][XIX] 10.67 51.0; 55.55 4.55 -9.23 0.41 22.59
Riboswitch 3B4C 109!B:122!B C:G WC [cWW][XIX] 10.55 54.46; 54.89 0.43 -7.89 0.01 10.65
Riboswitch 3B4C 110!B:121!B A:U WC [cWW][XX] 10.43 54.21; 55.59 1.37 -9.1 0.07 11.49
Riboswitch 3B4C 111!B:120!B C:G WC [cWW][XIX] 10.49 53.77; 53.86 0.09 -8.21 0.07 15.88
Riboswitch 3B4C 112!B:119!B A:U WC [cWW][XX] 10.14 56.69; 58.62 1.94 -5.04 0.07 12.29
Riboswitch 3B4C 113!B:118!B G:C WC [cWW][XIX] 10.58 55.49; 54.8 0.69 6.13 0.13 2.94
Riboswitch 3B4C 114!B:117!B G:A S_mo [tSH][XI] 9.94 83.27; 21.73 61.54 -149.21 0.7 20.53