Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B5A BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3B5A 2!A:13!B C:G WC [cWW][XIX] 10.51 56.03; 57.34 1.31 -12.03 0.15 22.29
HP_ribozyme 3B5A 3!A:12!B C:G WC [cWW][XIX] 10.6 54.46; 55.1 0.64 -8.1 0.03 7.87
HP_ribozyme 3B5A 4!A:11!B C:G WC [cWW][XIX] 10.43 60.48; 54.4 6.08 0.75 0.19 9.19
HP_ribozyme 3B5A 5!A:9!B A:A S [tSH][-] 10.35 84.87; 6.27 78.6 -105.86 0.02 17.95
HP_ribozyme 3B5A 6!A:25!B G:C WC [cWW][XIX] 10.45 56.02; 54.78 1.25 -17.95 0.66 23.79
HP_ribozyme 3B5A 7!A:8!B U:G S*_1 [tHS][-] 10.74 13.28; 101.49 88.21 25.24 0.41 19.5
HP_ribozyme 3B5A 8!A:7!B C:A Wb* [cWW][-] 11.28 45.53; 67.81 22.28 -2.64 0.27 31.17
HP_ribozyme 3B5A 9!A:6!B C:G WC [cWW][XIX] 10.79 54.27; 55.9 1.63 -4.24 0.38 14.23
HP_ribozyme 3B5A 10!A:5!B A:U WC [cWW][XX] 10.65 58.08; 51.62 6.47 -7.57 0.13 11.41
HP_ribozyme 3B5A 11!A:4!B C:G WC [cWW][XIX] 10.64 55.71; 55.42 0.3 -4.84 0.43 14.81
HP_ribozyme 3B5A 12!A:3!B C:G WC [cWW][XIX] 10.48 56.77; 55.18 1.59 -8.27 0.06 13.5
HP_ribozyme 3B5A 13!A:2!B G:C WC [cWW][XIX] 10.58 55.55; 55.66 0.11 -8.34 0.14 9.45
HP_ribozyme 3B5A 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.53 96.1; 151.53 55.42 -71.79 0.61 46.48
HP_ribozyme 3B5A 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.57 149.86; 93.65 56.21 -74.49 1.23 45.13
HP_ribozyme 3B5A 15!B:49!C G:C WC [cWW][XIX] 10.57 53.5; 56.05 2.55 -8.49 0.3 8.83
HP_ribozyme 3B5A 16!B:48!C G:C WC [cWW][XIX] 10.76 51.74; 54.73 3.0 -10.49 0.17 15.56
HP_ribozyme 3B5A 17!B:47!C C:G WC [cWW][XIX] 10.73 54.62; 55.12 0.5 -7.92 0.41 16.49
HP_ribozyme 3B5A 18!B:46!C A:U WC [cWW][XX] 10.32 60.14; 58.18 1.96 -5.96 0.1 12.77
HP_ribozyme 3B5A 19!B:45!C G:C WC [cWW][XIX] 10.32 56.95; 58.16 1.2 -2.55 0.03 14.11
HP_ribozyme 3B5A 20!B:44!C A:C Wb* [cWW][-] 10.46 76.43; 48.02 28.41 0.63 0.36 15.3
HP_ribozyme 3B5A 21!B:43!C G:A S [tSH][XI] 9.56 99.38; 3.32 96.05 57.65 0.07 7.15
HP_ribozyme 3B5A 22!B:41!C A:U rH_1 [tWH][XXIV] 9.71 22.71; 31.14 8.42 -164.34 0.59 13.98
HP_ribozyme 3B5A 23!B:40!C A:A rH [tWH][V] 12.72 12.11; 27.05 14.94 177.7 0.58 17.68
HP_ribozyme 3B5A 26!B:36!C A:G WC [cWW][VIII] 12.64 46.65; 47.95 1.29 -10.89 0.11 18.55
HP_ribozyme 3B5A 27!B:36!C C:G WC_Mo [cWW][XIX] 10.09 73.93; 61.45 12.48 -22.46 2.12 13.97
HP_ribozyme 3B5A 27!B:35!C C:G WC [cWW][XIX] 10.7 51.13; 54.03 2.9 -22.83 0.35 27.58
HP_ribozyme 3B5A 28!B:34!C A:U WC [cWW][XX] 10.5 53.98; 55.09 1.11 -19.73 0.01 23.17
HP_ribozyme 3B5A 29!B:33!C C:G WC [cWW][XIX] 10.59 55.96; 55.0 0.96 -13.12 0.4 17.02
HP_ribozyme 3B5A 30!B:32!C G:C WC [cWW][XIX] 10.76 53.22; 53.06 0.17 -10.74 0.19 15.13
HP_ribozyme 3B5A 31!B:31!C A:U WC [cWW][XX] 10.52 59.97; 52.62 7.35 -3.42 0.15 6.94