Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3B5A
BPC Identified: 30
Ambiguities: 0
| HP_ribozyme |
3B5A |
2!A:13!B |
C:G |
WC [cWW][XIX] |
10.51 |
56.03; 57.34 |
1.31 |
-12.03 |
0.15 |
22.29 |
| HP_ribozyme |
3B5A |
3!A:12!B |
C:G |
WC [cWW][XIX] |
10.6 |
54.46; 55.1 |
0.64 |
-8.1 |
0.03 |
7.87 |
| HP_ribozyme |
3B5A |
4!A:11!B |
C:G |
WC [cWW][XIX] |
10.43 |
60.48; 54.4 |
6.08 |
0.75 |
0.19 |
9.19 |
| HP_ribozyme |
3B5A |
5!A:9!B |
A:A |
S [tSH][-] |
10.35 |
84.87; 6.27 |
78.6 |
-105.86 |
0.02 |
17.95 |
| HP_ribozyme |
3B5A |
6!A:25!B |
G:C |
WC [cWW][XIX] |
10.45 |
56.02; 54.78 |
1.25 |
-17.95 |
0.66 |
23.79 |
| HP_ribozyme |
3B5A |
7!A:8!B |
U:G |
S*_1 [tHS][-] |
10.74 |
13.28; 101.49 |
88.21 |
25.24 |
0.41 |
19.5 |
| HP_ribozyme |
3B5A |
8!A:7!B |
C:A |
Wb* [cWW][-] |
11.28 |
45.53; 67.81 |
22.28 |
-2.64 |
0.27 |
31.17 |
| HP_ribozyme |
3B5A |
9!A:6!B |
C:G |
WC [cWW][XIX] |
10.79 |
54.27; 55.9 |
1.63 |
-4.24 |
0.38 |
14.23 |
| HP_ribozyme |
3B5A |
10!A:5!B |
A:U |
WC [cWW][XX] |
10.65 |
58.08; 51.62 |
6.47 |
-7.57 |
0.13 |
11.41 |
| HP_ribozyme |
3B5A |
11!A:4!B |
C:G |
WC [cWW][XIX] |
10.64 |
55.71; 55.42 |
0.3 |
-4.84 |
0.43 |
14.81 |
| HP_ribozyme |
3B5A |
12!A:3!B |
C:G |
WC [cWW][XIX] |
10.48 |
56.77; 55.18 |
1.59 |
-8.27 |
0.06 |
13.5 |
| HP_ribozyme |
3B5A |
13!A:2!B |
G:C |
WC [cWW][XIX] |
10.58 |
55.55; 55.66 |
0.11 |
-8.34 |
0.14 |
9.45 |
| HP_ribozyme |
3B5A |
10!B:25!B |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.53 |
96.1; 151.53 |
55.42 |
-71.79 |
0.61 |
46.48 |
| HP_ribozyme |
3B5A |
11!B:24!B |
G:A |
rpS(sb:O2*-N3) [---][-] |
5.57 |
149.86; 93.65 |
56.21 |
-74.49 |
1.23 |
45.13 |
| HP_ribozyme |
3B5A |
15!B:49!C |
G:C |
WC [cWW][XIX] |
10.57 |
53.5; 56.05 |
2.55 |
-8.49 |
0.3 |
8.83 |
| HP_ribozyme |
3B5A |
16!B:48!C |
G:C |
WC [cWW][XIX] |
10.76 |
51.74; 54.73 |
3.0 |
-10.49 |
0.17 |
15.56 |
| HP_ribozyme |
3B5A |
17!B:47!C |
C:G |
WC [cWW][XIX] |
10.73 |
54.62; 55.12 |
0.5 |
-7.92 |
0.41 |
16.49 |
| HP_ribozyme |
3B5A |
18!B:46!C |
A:U |
WC [cWW][XX] |
10.32 |
60.14; 58.18 |
1.96 |
-5.96 |
0.1 |
12.77 |
| HP_ribozyme |
3B5A |
19!B:45!C |
G:C |
WC [cWW][XIX] |
10.32 |
56.95; 58.16 |
1.2 |
-2.55 |
0.03 |
14.11 |
| HP_ribozyme |
3B5A |
20!B:44!C |
A:C |
Wb* [cWW][-] |
10.46 |
76.43; 48.02 |
28.41 |
0.63 |
0.36 |
15.3 |
| HP_ribozyme |
3B5A |
21!B:43!C |
G:A |
S [tSH][XI] |
9.56 |
99.38; 3.32 |
96.05 |
57.65 |
0.07 |
7.15 |
| HP_ribozyme |
3B5A |
22!B:41!C |
A:U |
rH_1 [tWH][XXIV] |
9.71 |
22.71; 31.14 |
8.42 |
-164.34 |
0.59 |
13.98 |
| HP_ribozyme |
3B5A |
23!B:40!C |
A:A |
rH [tWH][V] |
12.72 |
12.11; 27.05 |
14.94 |
177.7 |
0.58 |
17.68 |
| HP_ribozyme |
3B5A |
26!B:36!C |
A:G |
WC [cWW][VIII] |
12.64 |
46.65; 47.95 |
1.29 |
-10.89 |
0.11 |
18.55 |
| HP_ribozyme |
3B5A |
27!B:36!C |
C:G |
WC_Mo [cWW][XIX] |
10.09 |
73.93; 61.45 |
12.48 |
-22.46 |
2.12 |
13.97 |
| HP_ribozyme |
3B5A |
27!B:35!C |
C:G |
WC [cWW][XIX] |
10.7 |
51.13; 54.03 |
2.9 |
-22.83 |
0.35 |
27.58 |
| HP_ribozyme |
3B5A |
28!B:34!C |
A:U |
WC [cWW][XX] |
10.5 |
53.98; 55.09 |
1.11 |
-19.73 |
0.01 |
23.17 |
| HP_ribozyme |
3B5A |
29!B:33!C |
C:G |
WC [cWW][XIX] |
10.59 |
55.96; 55.0 |
0.96 |
-13.12 |
0.4 |
17.02 |
| HP_ribozyme |
3B5A |
30!B:32!C |
G:C |
WC [cWW][XIX] |
10.76 |
53.22; 53.06 |
0.17 |
-10.74 |
0.19 |
15.13 |
| HP_ribozyme |
3B5A |
31!B:31!C |
A:U |
WC [cWW][XX] |
10.52 |
59.97; 52.62 |
7.35 |
-3.42 |
0.15 |
6.94 |