Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B5F BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3B5F 2!A:13!B C:G WC [cWW][XIX] 10.34 56.33; 55.86 0.47 -12.87 0.0 23.65
HP_ribozyme 3B5F 3!A:12!B C:G WC [cWW][XIX] 10.4 55.42; 54.77 0.65 -10.43 0.07 9.76
HP_ribozyme 3B5F 4!A:11!B C:G WC [cWW][XIX] 10.36 59.59; 54.74 4.85 0.11 0.28 4.8
HP_ribozyme 3B5F 5!A:9!B A:A S [tSH][-] 10.55 79.59; 4.55 75.05 -73.7 0.15 8.57
HP_ribozyme 3B5F 6!A:25!B G:C WC [cWW][XIX] 10.34 55.1; 56.78 1.68 -15.24 0.3 13.41
HP_ribozyme 3B5F 7!A:8!B U:G S*_1 [tHS][-] 11.55 8.3; 94.35 86.05 85.53 1.5 24.87
HP_ribozyme 3B5F 8!A:7!B C:A Wb* [cWW][-] 11.23 44.91; 71.55 26.63 3.14 0.31 30.87
HP_ribozyme 3B5F 9!A:6!B C:G WC [cWW][XIX] 10.69 56.94; 55.55 1.39 -4.22 0.64 27.54
HP_ribozyme 3B5F 10!A:5!B A:U WC [cWW][XX] 10.95 54.01; 48.23 5.78 -7.5 0.02 11.86
HP_ribozyme 3B5F 11!A:4!B C:G WC [cWW][XIX] 10.35 54.72; 57.4 2.68 -5.28 0.31 13.07
HP_ribozyme 3B5F 12!A:3!B C:G WC [cWW][XIX] 10.39 55.13; 51.62 3.51 -7.17 0.13 12.01
HP_ribozyme 3B5F 13!A:2!B G:C WC_Mo [cWW][XIX] 10.52 59.49; 69.27 9.78 -11.44 0.01 14.7
HP_ribozyme 3B5F 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.36 95.79; 151.12 55.33 -63.33 0.35 49.18
HP_ribozyme 3B5F 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.43 154.14; 90.86 63.27 -76.46 1.38 47.76
HP_ribozyme 3B5F 15!B:49!C G:C WC [cWW][XIX] 10.64 53.28; 56.46 3.18 -9.57 0.36 9.99
HP_ribozyme 3B5F 16!B:48!C G:C WC [cWW][XIX] 10.48 52.75; 57.33 4.58 -7.95 0.14 13.88
HP_ribozyme 3B5F 17!B:47!C C:G WC [cWW][XIX] 10.61 55.67; 58.0 2.33 -5.95 0.23 13.49
HP_ribozyme 3B5F 18!B:46!C A:U WC [cWW][XX] 10.08 60.96; 59.21 1.76 -3.35 0.06 8.51
HP_ribozyme 3B5F 19!B:45!C G:C WC [cWW][XIX] 10.35 55.76; 56.96 1.2 1.77 0.09 12.24
HP_ribozyme 3B5F 20!B:44!C A:C Wb* [cWW][-] 10.26 77.6; 50.22 27.38 -0.09 0.24 14.61
HP_ribozyme 3B5F 21!B:43!C G:A S [tSH][XI] 9.41 100.69; 1.96 98.73 69.05 0.05 7.86
HP_ribozyme 3B5F 22!B:41!C A:U rH_1 [tWH][XXIV] 9.7 18.78; 33.3 14.52 -169.16 0.39 13.44
HP_ribozyme 3B5F 23!B:40!C A:A rH_Mo [tWH][V] 12.69 12.99; 29.59 16.6 177.89 0.67 22.03
HP_ribozyme 3B5F 26!B:36!C A:G WC [cWW][VIII] 12.49 47.96; 48.37 0.4 -10.74 0.1 20.84
HP_ribozyme 3B5F 27!B:35!C C:G WC [cWW][XIX] 10.48 54.12; 54.07 0.05 -16.61 0.42 22.3
HP_ribozyme 3B5F 28!B:34!C A:U WC [cWW][XX] 10.31 54.52; 56.65 2.13 -15.84 0.06 20.79
HP_ribozyme 3B5F 29!B:33!C C:G WC [cWW][XIX] 10.58 54.49; 54.93 0.44 -11.51 0.29 13.93
HP_ribozyme 3B5F 30!B:32!C G:C WC [cWW][XIX] 10.73 53.29; 53.36 0.08 -11.01 0.12 14.05
HP_ribozyme 3B5F 31!B:31!C A:U WC [cWW][XX] 10.44 60.69; 53.74 6.95 -1.07 0.04 4.92