Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3B5S BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3B5S 2!A:13!B C:G WC [cWW][XIX] 10.54 56.26; 55.76 0.5 -11.07 0.06 18.34
HP_ribozyme 3B5S 3!A:12!B C:G WC [cWW][XIX] 10.64 55.19; 53.35 1.85 -7.57 0.02 7.45
HP_ribozyme 3B5S 4!A:11!B C:G WC [cWW][XIX] 10.46 60.35; 53.44 6.91 0.57 0.17 6.71
HP_ribozyme 3B5S 5!A:9!B A:A S [tSH][-] 10.12 85.41; 7.15 78.27 -93.33 0.33 20.85
HP_ribozyme 3B5S 6!A:25!B G:C WC [cWW][XIX] 10.5 55.38; 54.45 0.94 -15.57 0.75 25.87
HP_ribozyme 3B5S 7!A:8!B U:G S*_1 [tHS][-] 10.93 14.0; 101.55 87.55 24.29 0.09 14.98
HP_ribozyme 3B5S 8!A:7!B C:A Wb* [cWW][-] 10.94 47.23; 68.82 21.59 -1.96 0.18 26.68
HP_ribozyme 3B5S 9!A:6!B C:G WC [cWW][XIX] 10.49 56.52; 58.82 2.3 -6.52 0.39 18.69
HP_ribozyme 3B5S 10!A:5!B A:U WC [cWW][XX] 10.31 60.61; 56.91 3.7 -8.93 0.21 11.01
HP_ribozyme 3B5S 11!A:4!B C:G WC [cWW][XIX] 10.56 57.21; 56.31 0.9 -7.64 0.16 12.66
HP_ribozyme 3B5S 12!A:3!B C:G WC [cWW][XIX] 10.47 57.39; 55.62 1.77 -9.08 0.08 12.74
HP_ribozyme 3B5S 13!A:2!B G:C WC [cWW][XIX] 10.52 57.26; 59.42 2.16 -5.32 0.19 10.25
HP_ribozyme 3B5S 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.47 94.19; 149.28 55.09 -71.06 0.81 46.48
HP_ribozyme 3B5S 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.48 149.87; 94.5 55.37 -69.83 1.46 45.13
HP_ribozyme 3B5S 15!B:49!C G:C WC [cWW][XIX] 10.58 54.22; 56.32 2.09 -9.32 0.25 9.36
HP_ribozyme 3B5S 16!B:48!C G:C WC [cWW][XIX] 10.66 51.76; 54.96 3.2 -10.61 0.13 15.82
HP_ribozyme 3B5S 17!B:47!C C:G WC [cWW][XIX] 10.72 54.4; 54.96 0.57 -9.4 0.4 15.0
HP_ribozyme 3B5S 18!B:46!C A:U WC [cWW][XX] 10.34 59.12; 57.35 1.77 -7.02 0.07 10.77
HP_ribozyme 3B5S 19!B:45!C G:C WC [cWW][XIX] 10.32 56.83; 57.89 1.06 -0.07 0.06 13.04
HP_ribozyme 3B5S 20!B:44!C A:C Wb* [cWW][-] 10.43 76.26; 47.87 28.39 -0.05 0.33 16.87
HP_ribozyme 3B5S 21!B:43!C G:A S [tSH][XI] 9.58 97.63; 2.37 95.27 26.35 0.13 6.42
HP_ribozyme 3B5S 22!B:41!C A:U rH_1 [tWH][XXIV] 9.73 22.31; 29.62 7.31 -165.96 0.49 12.12
HP_ribozyme 3B5S 23!B:40!C A:A rH [tWH][V] 12.6 13.56; 26.39 12.83 173.12 0.78 22.92
HP_ribozyme 3B5S 26!B:36!C A:G WC [cWW][VIII] 12.78 45.46; 43.7 1.75 -8.88 0.27 20.32
HP_ribozyme 3B5S 27!B:36!C C:G WC_Mo [cWW][XIX] 10.21 72.8; 56.85 15.95 -19.28 2.04 13.12
HP_ribozyme 3B5S 27!B:35!C C:G WC [cWW][XIX] 10.76 51.75; 51.67 0.08 -18.39 0.35 23.3
HP_ribozyme 3B5S 28!B:34!C A:U WC [cWW][XX] 10.56 55.26; 55.33 0.06 -20.79 0.15 19.76
HP_ribozyme 3B5S 29!B:33!C C:G WC [cWW][XIX] 10.62 55.41; 55.22 0.19 -14.47 0.36 16.04
HP_ribozyme 3B5S 30!B:32!C G:C WC [cWW][XIX] 10.72 52.81; 53.43 0.62 -11.88 0.11 15.17
HP_ribozyme 3B5S 31!B:31!C A:U WC [cWW][XX] 10.64 57.57; 50.14 7.43 -3.94 0.11 7.84