Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3BBK BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_Ribozyme 3BBK 2!A:13!B C:G WC [cWW][XIX] 10.47 53.96; 57.99 4.03 -11.93 0.1 19.19
HP_Ribozyme 3BBK 3!A:12!B C:G WC [cWW][XIX] 10.6 55.16; 53.16 2.0 -11.19 0.03 11.12
HP_Ribozyme 3BBK 4!A:11!B C:G WC [cWW][XIX] 10.55 60.89; 54.52 6.37 -0.58 0.23 4.51
HP_Ribozyme 3BBK 5!A:9!B A:A S [tSH][-] 10.6 78.26; 4.43 73.83 -90.57 0.35 9.8
HP_Ribozyme 3BBK 6!A:25!B G:C WC [cWW][XIX] 10.37 54.68; 56.65 1.97 -14.22 0.36 16.69
HP_Ribozyme 3BBK 7!A:8!B U:G S*_1 [tHS][-] 11.39 7.31; 90.95 83.64 79.78 1.12 17.87
HP_Ribozyme 3BBK 8!A:7!B C:A Wb* [cWW][-] 11.24 43.23; 71.77 28.54 5.36 0.1 27.22
HP_Ribozyme 3BBK 9!A:6!B C:G WC [cWW][XIX] 10.62 58.0; 59.04 1.04 -3.86 0.41 13.15
HP_Ribozyme 3BBK 10!A:5!B A:U WC [cWW][XX] 10.54 57.11; 53.08 4.03 -16.75 0.17 18.47
HP_Ribozyme 3BBK 11!A:4!B C:G WC [cWW][XIX] 10.64 56.52; 57.93 1.42 -7.61 0.4 16.51
HP_Ribozyme 3BBK 12!A:3!B C:G WC [cWW][XIX] 10.53 55.64; 53.59 2.05 -14.3 0.02 17.78
HP_Ribozyme 3BBK 13!A:2!B G:C WC [cWW][XIX] 10.28 61.71; 59.6 2.11 -11.27 0.22 11.71
HP_Ribozyme 3BBK 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.39 96.92; 151.66 54.74 -64.16 0.06 48.13
HP_Ribozyme 3BBK 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.51 149.76; 93.45 56.32 -69.15 1.55 47.04
HP_Ribozyme 3BBK 15!B:49!C G:C WC [cWW][XIX] 10.81 53.83; 55.44 1.61 -7.79 0.4 6.8
HP_Ribozyme 3BBK 16!B:48!C G:C WC [cWW][XIX] 10.75 53.3; 53.31 0.01 -8.28 0.07 12.7
HP_Ribozyme 3BBK 17!B:47!C C:G WC [cWW][XIX] 10.68 55.5; 56.31 0.82 -7.69 0.22 12.25
HP_Ribozyme 3BBK 18!B:46!C A:U WC [cWW][XX] 10.16 59.12; 59.95 0.82 -2.95 0.0 9.87
HP_Ribozyme 3BBK 19!B:45!C G:C WC [cWW][XIX] 10.39 56.16; 57.25 1.09 2.12 0.23 15.29
HP_Ribozyme 3BBK 20!B:44!C A:C Wb* [cWW][-] 10.33 78.79; 49.06 29.72 0.87 0.11 14.24
HP_Ribozyme 3BBK 21!B:43!C G:A S [tSH][XI] 9.34 99.47; 2.33 97.14 47.6 0.09 7.2
HP_Ribozyme 3BBK 22!B:41!C A:U rH_1 [tWH][XXIV] 9.88 20.09; 31.66 11.57 -169.65 0.33 11.05
HP_Ribozyme 3BBK 23!B:40!C A:A rH [tWH][V] 12.47 12.18; 30.35 18.17 159.74 0.43 24.44
HP_Ribozyme 3BBK 24!B:38!C A:C H_2 [---][-] 11.49 4.81; 63.07 58.26 151.43 0.42 19.65
HP_Ribozyme 3BBK 26!B:36!C A:G WC [cWW][VIII] 12.63 47.35; 45.82 1.53 -12.72 0.09 19.72
HP_Ribozyme 3BBK 27!B:35!C C:G WC [cWW][XIX] 10.56 54.62; 55.65 1.03 -20.24 0.49 26.33
HP_Ribozyme 3BBK 28!B:34!C A:U WC [cWW][XX] 10.51 53.47; 55.98 2.51 -17.63 0.17 21.75
HP_Ribozyme 3BBK 29!B:33!C C:G WC [cWW][XIX] 10.49 55.45; 53.48 1.96 -10.46 0.33 15.45
HP_Ribozyme 3BBK 30!B:32!C G:C WC [cWW][XIX] 10.77 54.14; 53.76 0.39 -9.43 0.49 8.43
HP_Ribozyme 3BBK 31!B:31!C A:U WC [cWW][XX] 10.65 59.67; 52.4 7.27 2.37 0.09 3.82