Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3BBM BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_Ribozyme 3BBM 2!A:13!B C:G WC [cWW][XIX] 10.38 58.16; 57.27 0.89 -7.13 0.18 17.96
HP_Ribozyme 3BBM 3!A:12!B C:G WC [cWW][XIX] 10.59 55.29; 54.64 0.65 -5.3 0.07 8.14
HP_Ribozyme 3BBM 4!A:11!B C:G WC [cWW][XIX] 10.44 60.81; 55.7 5.11 0.07 0.23 7.35
HP_Ribozyme 3BBM 5!A:9!B A:A S [tSH][-] 10.79 78.16; 3.68 74.49 -113.48 0.33 12.75
HP_Ribozyme 3BBM 6!A:25!B G:C WC [cWW][XIX] 10.53 51.84; 55.89 4.05 -16.61 0.3 16.59
HP_Ribozyme 3BBM 7!A:8!B U:G S*_1 [tHS][-] 10.97 12.23; 103.99 91.76 23.38 0.17 14.51
HP_Ribozyme 3BBM 8!A:7!B C:A Wb* [cWW][-] 11.08 47.16; 71.27 24.11 -5.69 0.05 28.02
HP_Ribozyme 3BBM 9!A:6!B C:G WC [cWW][XIX] 10.5 58.79; 56.92 1.87 -6.16 0.25 12.31
HP_Ribozyme 3BBM 10!A:5!B A:U WC [cWW][XX] 10.68 56.79; 47.91 8.88 -10.86 0.31 10.19
HP_Ribozyme 3BBM 11!A:4!B C:G WC [cWW][XIX] 10.54 60.63; 55.21 5.42 -6.65 0.15 9.46
HP_Ribozyme 3BBM 12!A:3!B C:G WC [cWW][XIX] 10.41 56.84; 55.31 1.53 -11.09 0.03 13.86
HP_Ribozyme 3BBM 13!A:2!B G:C WC [cWW][XIX] 10.48 60.58; 56.41 4.16 -6.37 0.05 10.32
HP_Ribozyme 3BBM 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.47 95.61; 150.38 54.77 -65.96 0.45 49.35
HP_Ribozyme 3BBM 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.43 151.09; 93.77 57.33 -73.95 1.61 50.22
HP_Ribozyme 3BBM 15!B:49!C G:C WC [cWW][XIX] 10.6 53.9; 55.91 2.01 -9.11 0.47 11.39
HP_Ribozyme 3BBM 16!B:48!C G:C WC [cWW][XIX] 10.56 50.27; 59.32 9.06 -8.56 0.02 13.84
HP_Ribozyme 3BBM 17!B:47!C C:G WC [cWW][XIX] 10.7 55.72; 56.56 0.84 -6.18 0.01 11.94
HP_Ribozyme 3BBM 18!B:46!C A:U WC [cWW][XX] 10.06 59.49; 61.65 2.16 -1.02 0.15 9.96
HP_Ribozyme 3BBM 19!B:45!C G:C WC [cWW][XIX] 10.4 56.21; 57.89 1.68 -1.43 0.12 11.93
HP_Ribozyme 3BBM 20!B:44!C A:C Wb* [cWW][-] 10.44 76.48; 50.15 26.32 -1.36 0.04 15.03
HP_Ribozyme 3BBM 21!B:43!C G:A S [tSH][XI] 9.46 99.2; 1.52 97.68 51.08 0.02 5.01
HP_Ribozyme 3BBM 22!B:41!C A:U rH_1 [tWH][XXIV] 9.9 19.46; 32.56 13.09 -158.32 0.55 14.66
HP_Ribozyme 3BBM 23!B:42!C A:U WC [cWW][XX] 9.75 46.41; 66.53 20.13 39.06 2.18 79.69
HP_Ribozyme 3BBM 23!B:40!C A:A rH [tWH][V] 12.57 11.82; 28.84 17.02 172.55 0.52 23.14
HP_Ribozyme 3BBM 26!B:36!C A:G WC [cWW][VIII] 12.72 45.76; 44.72 1.04 -13.9 0.15 18.31
HP_Ribozyme 3BBM 27!B:35!C C:G WC [cWW][XIX] 10.54 53.08; 53.51 0.44 -19.05 0.34 23.78
HP_Ribozyme 3BBM 28!B:34!C A:U WC [cWW][XX] 10.47 54.62; 56.55 1.93 -17.5 0.26 25.18
HP_Ribozyme 3BBM 29!B:33!C C:G WC [cWW][XIX] 10.6 55.82; 54.69 1.13 -11.0 0.39 16.07
HP_Ribozyme 3BBM 30!B:32!C G:C WC [cWW][XIX] 10.84 52.45; 54.22 1.77 -11.44 0.14 11.25
HP_Ribozyme 3BBM 31!B:31!C A:U WC [cWW][XX] 10.57 62.14; 51.66 10.48 -2.15 0.02 7.08