Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3BNP
BPC Identified: 16
Ambiguities: 0
| rRNA |
3BNP |
2!A:21!B |
G:C |
WC [cWW][XIX] |
10.56 |
53.07; 56.18 |
3.11 |
-1.26 |
0.09 |
7.83 |
| rRNA |
3BNP |
3!A:20!B |
C:G |
WC [cWW][XIX] |
10.34 |
60.58; 57.9 |
2.69 |
-7.23 |
0.19 |
6.08 |
| rRNA |
3BNP |
4!A:19!B |
G:C |
WC [cWW][XIX] |
10.44 |
57.21; 57.14 |
0.07 |
-7.47 |
0.09 |
12.46 |
| rRNA |
3BNP |
5!A:18!B |
U:U |
Wb [cWW][XVI] |
8.9 |
65.66; 44.83 |
20.83 |
-19.16 |
0.07 |
23.12 |
| rRNA |
3BNP |
6!A:17!B |
C:G |
WC [cWW][XIX] |
10.81 |
53.38; 56.02 |
2.64 |
-5.96 |
0.04 |
10.69 |
| rRNA |
3BNP |
9!A:13!B |
C:G |
WC [cWW][XIX] |
10.59 |
56.52; 59.82 |
3.31 |
-4.63 |
0.33 |
5.56 |
| rRNA |
3BNP |
10!A:12!B |
C:G |
WC [cWW][XIX] |
10.34 |
54.57; 60.51 |
5.94 |
-1.53 |
0.02 |
23.61 |
| rRNA |
3BNP |
11!A:11!B |
C:G |
WC [cWW][XIX] |
10.47 |
55.64; 56.17 |
0.53 |
3.11 |
0.02 |
8.49 |
| rRNA |
3BNP |
12!A:10!B |
G:C |
WC [cWW][XIX] |
10.53 |
54.84; 53.6 |
1.24 |
-3.75 |
0.25 |
5.37 |
| rRNA |
3BNP |
13!A:9!B |
G:C |
WC [cWW][XIX] |
10.58 |
57.19; 54.8 |
2.39 |
1.28 |
0.12 |
9.54 |
| rRNA |
3BNP |
14!A:8!B |
G:C |
WC [cWW][XIX] |
10.41 |
55.82; 54.47 |
1.35 |
-4.78 |
0.47 |
19.25 |
| rRNA |
3BNP |
18!A:5!B |
G:C |
WC [cWW][XIX] |
10.73 |
59.11; 52.45 |
6.66 |
-4.78 |
0.28 |
2.24 |
| rRNA |
3BNP |
19!A:4!B |
U:U |
Wb [cWW][XVI] |
8.92 |
47.09; 69.18 |
22.09 |
-13.81 |
0.18 |
13.66 |
| rRNA |
3BNP |
20!A:3!B |
C:G |
WC [cWW][XIX] |
10.37 |
56.82; 59.85 |
3.03 |
-7.06 |
0.0 |
18.24 |
| rRNA |
3BNP |
21!A:2!B |
G:C |
WC [cWW][XIX] |
10.46 |
54.82; 54.84 |
0.01 |
-4.84 |
0.2 |
12.06 |
| rRNA |
3BNP |
22!A:1!B |
C:G |
WC [cWW][XIX] |
10.65 |
54.0; 51.94 |
2.06 |
-3.9 |
0.11 |
2.76 |