Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3BO2 BPC Identified: 117 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 3BO2 4!B:6!D G:C WC [cWW][XIX] 11.47 54.36; 48.45 5.91 17.3 0.01 12.9
Group_I_RNA 3BO2 5!B:5!D G:C WC [cWW][XIX] 11.18 47.58; 56.5 8.92 -9.05 0.02 11.58
Group_I_RNA 3BO2 6!B:4!D C:G WC [cWW][XIX] 10.62 52.94; 47.96 4.97 -12.3 0.69 23.37
Group_I_RNA 3BO2 7!B:3!D C:G WC [cWW][XIX] 10.94 43.43; 50.87 7.44 -17.96 0.35 19.8
Group_I_RNA 3BO2 8!B:2!D G:C WC [cWW][XIX] 10.46 48.28; 56.11 7.83 -15.23 0.22 20.39
Group_I_RNA 3BO2 9!B:1!D U:A WC [cWW][XX] 10.91 45.34; 52.78 7.44 -23.05 0.63 29.74
Group_I_RNA 3BO2 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 6.03 100.42; 152.46 52.04 -74.11 0.74 44.23
Group_I_RNA 3BO2 10!B:3!E G:U Wb [cWW][XXVIII] 10.93 38.42; 61.5 23.08 -18.85 0.45 12.26
Group_I_RNA 3BO2 10!B:87!B G:A rS [tSS][-] 8.34 75.9; 85.14 9.23 143.32 0.17 43.02
Group_I_RNA 3BO2 10!B:58!B G:A rpS(ss:O2*-N3) [---][-] 6.14 138.23; 91.59 46.64 -64.38 0.9 43.57
Group_I_RNA 3BO2 11!B:2!E U:A WC [cWW][XX] 10.64 59.85; 44.95 14.91 -13.17 0.51 10.16
Group_I_RNA 3BO2 12!B:1!E G:C WC [cWW][XIX] 10.84 49.34; 51.41 2.07 -10.24 0.28 10.61
Group_I_RNA 3BO2 12!B:168!B G:A rpS [cSS][-] 6.86 95.33; 139.71 44.37 -50.39 0.87 23.33
Group_I_RNA 3BO2 13!B:167!B C:A rpS(ss:O2*-N3) [cSS][-] 5.81 134.88; 99.25 35.63 -79.42 0.89 33.25
Group_I_RNA 3BO2 13!B:37!B C:G WC [cWW][XIX] 10.36 57.68; 59.46 1.78 -20.65 0.17 24.29
Group_I_RNA 3BO2 14!B:39!B C:A pfS [cSW][-] 9.94 129.61; 34.27 95.34 -20.26 0.73 30.24
Group_I_RNA 3BO2 14!B:36!B C:G WC [cWW][XIX] 10.91 49.46; 44.9 4.55 -18.71 0.08 21.14
Group_I_RNA 3BO2 15!B:35!B U:A WC [cWW][XX] 11.1 42.8; 52.14 9.34 -19.38 0.49 20.71
Group_I_RNA 3BO2 16!B:34!B U:A WC [cWW][XX] 11.12 56.21; 48.0 8.21 -6.86 0.59 4.36
Group_I_RNA 3BO2 17!B:33!B G:C WC [cWW][XIX] 10.92 47.66; 51.44 3.78 -3.52 0.1 14.44
Group_I_RNA 3BO2 18!B:32!B C:G WC [cWW][XIX] 10.6 54.5; 52.35 2.15 -7.72 0.18 23.98
Group_I_RNA 3BO2 19!B:31!B G:C WC [cWW][XIX] 10.73 51.13; 53.56 2.42 -24.09 0.2 30.69
Group_I_RNA 3BO2 22!B:29!B G:C WC [cWW][XIX] 11.33 53.62; 49.84 3.78 -0.48 0.13 8.58
Group_I_RNA 3BO2 23!B:28!B G:C WC_Mo [cWW][XIX] 11.01 55.36; 67.74 12.38 3.03 0.17 8.57
Group_I_RNA 3BO2 24!B:27!B G:A S [tSH][XI] 9.29 89.1; 15.12 73.98 -125.86 0.72 13.87
Group_I_RNA 3BO2 25!B:161!B A:A rWb* [tWW][I] 13.83 21.59; 33.67 12.07 135.12 0.13 21.1
Group_I_RNA 3BO2 26!B:148!B A:U rpS(ss:O2*-N3) [cSS][-] 5.54 99.74; 144.06 44.32 -51.68 0.1 27.22
Group_I_RNA 3BO2 27!B:163!B A:G rS [tSS][-] 8.32 60.36; 86.01 25.66 163.45 0.97 19.36
Group_I_RNA 3BO2 27!B:147!B A:C rpS(bs:O2-O2*) [cSS][-] 5.95 147.55; 97.12 50.43 -57.94 0.55 23.76
Group_I_RNA 3BO2 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 5.82 162.56; 154.01 8.55 -106.05 1.1 18.79
Group_I_RNA 3BO2 36!B:38!B G:G pS_1 [cSH][-] 9.92 113.9; 21.55 92.35 -41.96 0.25 47.77
Group_I_RNA 3BO2 41!B:143!B G:C WC [cWW][XIX] 10.57 52.54; 60.97 8.42 -6.87 0.01 11.48
Group_I_RNA 3BO2 42!B:142!B G:C WC [cWW][XIX] 10.58 55.97; 64.22 8.25 -1.79 0.04 3.63
Group_I_RNA 3BO2 43!B:141!B U:A WC [cWW][XX] 10.79 53.6; 56.5 2.9 0.14 0.58 12.07
Group_I_RNA 3BO2 44!B:140!B G:C WC [cWW][XIX] 10.79 54.63; 57.71 3.08 -9.97 0.0 19.22
Group_I_RNA 3BO2 45!B:139!B U:G Wb [cWW][XXVIII] 10.31 64.51; 47.91 16.6 -16.0 0.18 21.96
Group_I_RNA 3BO2 46!B:138!B C:G WC [cWW][XIX] 10.99 52.69; 60.3 7.61 -11.03 0.2 14.22
Group_I_RNA 3BO2 46!B:97!B C:A rpS(ss:O2*-N3) [cSS][-] 5.83 143.2; 90.64 52.56 -68.48 0.31 30.29
Group_I_RNA 3BO2 47!B:136!B A:A rH [tWH][V] 12.58 27.41; 17.79 9.62 -131.26 0.0 19.4
Group_I_RNA 3BO2 48!B:96!B A:C rpS(ss:O2*-N3) [cSS][-] 6.09 88.52; 156.5 67.98 -29.18 0.67 24.77
Group_I_RNA 3BO2 49!B:123!B A:G rS [tSS][-] 8.26 63.86; 88.98 25.13 155.43 0.76 22.39
Group_I_RNA 3BO2 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 5.86 151.14; 105.95 45.19 -42.99 1.44 2.62
Group_I_RNA 3BO2 51!B:93!B U:A WC [cWW][XX] 10.23 55.04; 61.59 6.55 1.96 0.48 14.92
Group_I_RNA 3BO2 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 9.01 20.6; 150.44 129.84 32.84 0.1 12.92
Group_I_RNA 3BO2 52!B:92!B C:G WC [cWW][XIX] 10.78 51.17; 59.56 8.39 -4.61 0.23 8.18
Group_I_RNA 3BO2 53!B:91!B G:C WC [cWW][XIX] 11.06 48.87; 55.19 6.32 0.91 0.02 9.5
Group_I_RNA 3BO2 54!B:90!B G:C WC [cWW][XIX] 10.48 57.22; 55.49 1.73 9.92 0.0 13.92
Group_I_RNA 3BO2 55!B:89!B C:G WC [cWW][XIX] 10.85 55.09; 48.46 6.63 -4.22 0.46 1.97
Group_I_RNA 3BO2 56!B:88!B G:C WC [cWW][XIX] 10.33 50.47; 57.98 7.51 -3.36 0.03 30.37
Group_I_RNA 3BO2 57!B:87!B A:A S [tSH][-] 9.82 85.97; 5.42 80.55 -78.68 0.14 11.54
Group_I_RNA 3BO2 58!B:86!B A:A S [tSH][-] 9.3 4.53; 88.95 84.42 94.78 0.29 4.95
Group_I_RNA 3BO2 59!B:85!B A:C sWb [---][-] 11.48 21.28; 58.73 37.46 1.77 0.38 27.37
Group_I_RNA 3BO2 60!B:2!D C:C rS(ss:O2*-O2*)_1 [---][-] 5.56 138.16; 150.08 11.92 -146.11 0.47 26.88
Group_I_RNA 3BO2 60!B:84!B C:G WC [cWW][XIX] 10.87 46.93; 53.05 6.12 -15.03 0.83 28.66
Group_I_RNA 3BO2 61!B:192!C C:A rpS(bs:O2-O2*) [cSS][-] 5.75 104.09; 159.07 54.98 -66.4 0.12 27.61
Group_I_RNA 3BO2 61!B:83!B C:G WC [cWW][XIX] 10.64 57.01; 49.87 7.14 -4.96 0.31 13.52
Group_I_RNA 3BO2 62!B:191!C U:A rpS(ss:O2*-N3) [cSS][-] 6.03 149.93; 88.59 61.34 -71.82 0.05 25.73
Group_I_RNA 3BO2 62!B:81!B U:A rH_1 [tWH][XXIV] 9.62 36.92; 14.49 22.44 146.46 0.47 15.59
Group_I_RNA 3BO2 63!B:64!B A:A pS [cSH][-] 6.85 143.52; 34.92 108.6 10.3 0.4 9.61
Group_I_RNA 3BO2 65!B:80!B G:U Wb [cWW][XXVIII] 10.71 45.32; 63.77 18.44 -7.12 0.06 7.0
Group_I_RNA 3BO2 66!B:79!B C:G WC [cWW][XIX] 10.53 54.65; 53.19 1.46 -12.41 0.07 16.26
Group_I_RNA 3BO2 67!B:78!B G:C WC [cWW][XIX] 10.6 51.24; 53.92 2.69 -13.77 0.06 16.67
Group_I_RNA 3BO2 68!B:77!B C:G WC [cWW][XIX] 11.02 50.8; 47.54 3.26 -8.81 0.07 9.96
Group_I_RNA 3BO2 69!B:76!B C:G WC [cWW][XIX] 11.29 50.81; 40.99 9.82 -6.61 0.23 13.6
Group_I_RNA 3BO2 70!B:75!B C:G WC [cWW][XIX] 10.58 57.41; 48.4 9.01 -0.88 0.21 5.83
Group_I_RNA 3BO2 83!B:192!C G:A rS [tSS][-] 8.16 81.41; 68.56 12.86 174.64 0.15 25.81
Group_I_RNA 3BO2 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 6.05 155.91; 144.96 10.95 -134.96 0.78 28.8
Group_I_RNA 3BO2 87!B:3!E A:U rpS(ss:O2*-O2*)_2 [---][-] 6.66 140.99; 108.04 32.95 -106.5 0.21 39.31
Group_I_RNA 3BO2 91!B:126!B C:U rS* [tHH][-] 13.11 13.17; 10.52 2.65 -99.96 0.42 19.27
Group_I_RNA 3BO2 92!B:125!B G:G S_1 [tSH][-] 11.46 12.44; 88.81 76.36 24.93 0.55 4.84
Group_I_RNA 3BO2 94!B:124!B G:U Wb [cWW][XXVIII] 10.57 38.51; 65.9 27.39 -3.84 0.18 8.74
Group_I_RNA 3BO2 95!B:123!B C:G WC [cWW][XIX] 10.54 54.66; 55.43 0.77 -7.42 0.47 20.01
Group_I_RNA 3BO2 96!B:122!B C:G WC [cWW][XIX] 10.65 53.11; 50.33 2.78 0.65 0.04 4.17
Group_I_RNA 3BO2 98!B:139!B A:G rS [tSS][-] 8.43 60.35; 96.49 36.14 173.23 1.03 12.12
Group_I_RNA 3BO2 98!B:121!B A:A Wb [cWW][-] 13.75 28.75; 44.69 15.93 -2.58 1.06 31.43
Group_I_RNA 3BO2 99!B:120!B G:A WC [cWW][VIII] 12.86 46.64; 46.2 0.44 -3.74 1.21 32.45
Group_I_RNA 3BO2 100!B:119!B C:G WC [cWW][XIX] 11.22 40.33; 57.55 17.21 -6.47 1.31 35.69
Group_I_RNA 3BO2 101!B:118!B U:U Wb [cWW][XVI] 9.65 39.75; 59.24 19.48 -11.6 0.61 18.82
Group_I_RNA 3BO2 102!B:117!B U:A WC [cWW][XX] 10.83 50.84; 56.91 6.06 -3.7 0.4 11.13
Group_I_RNA 3BO2 103!B:116!B C:G WC [cWW][XIX] 10.66 50.21; 58.44 8.23 -11.42 0.47 9.29
Group_I_RNA 3BO2 104!B:115!B G:C WC [cWW][XIX] 11.19 48.37; 46.47 1.9 -6.54 0.34 4.34
Group_I_RNA 3BO2 105!B:114!B C:G WC_Mo [cWW][XIX] 10.4 65.46; 62.46 3.0 2.29 0.29 18.1
Group_I_RNA 3BO2 107!B:112!B G:C WC [cWW][XIX] 11.26 56.05; 52.48 3.56 5.89 0.3 23.36
Group_I_RNA 3BO2 1001!B:1014!B C:G WC [cWW][XIX] 11.29 52.91; 51.81 1.1 0.16 0.77 10.07
Group_I_RNA 3BO2 1002!B:1013!B C:G WC [cWW][XIX] 10.89 56.11; 49.08 7.02 1.45 0.07 5.86
Group_I_RNA 3BO2 128!B:178!B G:C WC [cWW][XIX] 11.11 49.12; 53.32 4.2 -13.67 0.59 23.36
Group_I_RNA 3BO2 128!B:129!B G:A pS_2 [cSH][-] 7.69 113.08; 61.49 51.59 -11.66 0.05 17.38
Group_I_RNA 3BO2 129!B:178!B A:C S [tSH][-] 10.5 11.98; 94.88 82.9 4.4 0.0 15.08
Group_I_RNA 3BO2 130!B:206!C G:G H_1 [cWH][VI] 11.83 23.79; 64.21 40.42 1.92 0.62 26.99
Group_I_RNA 3BO2 130!B:177!B G:C WC [cWW][XIX] 10.59 56.3; 58.5 2.2 -13.57 0.03 18.04
Group_I_RNA 3BO2 131!B:176!B A:U WC [cWW][XX] 10.42 55.08; 53.74 1.33 -3.13 0.05 10.1
Group_I_RNA 3BO2 132!B:175!B C:G WC [cWW][XIX] 10.7 49.48; 56.73 7.25 -7.97 0.08 17.08
Group_I_RNA 3BO2 133!B:174!B U:A WC [cWW][XX] 10.87 51.24; 48.21 3.03 -22.89 0.17 29.02
Group_I_RNA 3BO2 134!B:173!B A:U WC [cWW][XX] 11.23 51.77; 48.48 3.28 -10.41 0.56 8.78
Group_I_RNA 3BO2 135!B:170!B G:G rH_1 [tWH][VII] 11.48 43.23; 33.33 9.9 -170.2 0.01 9.69
Group_I_RNA 3BO2 136!B:137!B A:C rpS(ss:O2*-N3) [cSS][-] 5.13 114.49; 96.64 17.85 -109.29 0.98 62.37
Group_I_RNA 3BO2 144!B:166!B C:G WC [cWW][XIX] 11.12 49.75; 50.01 0.25 -5.34 0.09 7.12
Group_I_RNA 3BO2 145!B:165!B A:U WC [cWW][XX] 10.5 56.41; 56.2 0.21 -12.46 0.04 19.78
Group_I_RNA 3BO2 146!B:164!B C:G WC [cWW][XIX] 10.4 58.54; 50.29 8.25 -11.43 0.17 18.7
Group_I_RNA 3BO2 147!B:163!B C:G WC [cWW][XIX] 10.88 49.42; 53.7 4.28 -5.97 0.21 10.14
Group_I_RNA 3BO2 148!B:161!B U:A rH_1 [tWH][XXIV] 10.01 36.82; 13.94 22.88 158.76 0.23 7.89
Group_I_RNA 3BO2 151!B:160!B G:U Wb [cWW][XXVIII] 10.64 41.07; 61.21 20.14 -10.24 0.27 9.88
Group_I_RNA 3BO2 152!B:159!B G:C WC [cWW][XIX] 10.82 56.0; 50.04 5.97 -13.26 0.19 17.23
Group_I_RNA 3BO2 153!B:158!B C:G WC [cWW][XIX] 10.82 54.05; 61.66 7.61 -11.31 0.11 13.18
Group_I_RNA 3BO2 154!B:156!B A:A S(ss:O2*-N7)_2 [---][-] 6.64 94.79; 45.32 49.47 -178.96 1.77 24.34
Group_I_RNA 3BO2 168!B:1!E A:C fS(ss:O2*-N1)_1 [tSS][-] 8.51 55.23; 88.4 33.16 178.07 0.09 16.03
Group_I_RNA 3BO2 172!B:173!B A:U pS* [cHS][-] 6.97 141.92; 40.88 101.04 19.37 1.73 13.29
Group_I_RNA 3BO2 180!B:204!C G:C WC [cWW][XIX] 10.65 55.51; 52.09 3.42 -10.81 0.12 14.59
Group_I_RNA 3BO2 181!B:203!C G:C WC [cWW][XIX] 10.78 48.9; 50.92 2.02 -4.14 0.23 11.38
Group_I_RNA 3BO2 182!B:202!C G:A S [tSH][XI] 9.87 94.39; 6.63 87.76 94.17 0.75 6.18
Group_I_RNA 3BO2 183!B:201!C A:A rS* [tHH][-] 10.15 20.79; 15.36 5.44 -109.77 0.12 20.26
Group_I_RNA 3BO2 184!B:197!C G:C WC [cWW][XIX] 10.97 54.96; 49.52 5.45 6.04 0.3 13.67
Group_I_RNA 3BO2 185!B:196!C U:A WC [cWW][XX] 10.53 55.69; 54.05 1.64 1.62 0.61 8.14
Group_I_RNA 3BO2 186!B:195!C* G:C Wb* [---][-]; Wb* [---][-] 11.85 60.81; 46.01 14.8 -6.31 0.28 20.51
Group_I_RNA 3BO2 187!B:194!C G:C WC [cWW][XIX] 10.88 52.41; 54.75 2.34 -1.37 0.01 25.07
Group_I_RNA 3BO2 188!B:193!C C:G Wb [---][-] 10.94 57.71; 44.24 13.47 2.23 0.12 10.46
Group_I_RNA 3BO2 189!B:192!C G:A S [tSH][XI] 9.54 93.64; 13.01 80.63 -78.81 0.29 20.0