Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3BO3 BPC Identified: 117 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 3BO3 4!B:9!D G:C WC [cWW][XIX] 10.62 50.89; 58.87 7.97 -1.88 1.07 5.7
Group_I_RNA 3BO3 5!B:8!D G:C WC [cWW][XIX] 10.55 47.1; 55.96 8.86 -9.03 0.27 13.56
Group_I_RNA 3BO3 6!B:7!D C:G WC [cWW][XIX] 11.06 51.18; 50.91 0.27 -14.61 0.48 14.29
Group_I_RNA 3BO3 7!B:6!D C:G WC [cWW][XIX] 10.96 48.59; 48.96 0.36 -7.64 0.22 12.42
Group_I_RNA 3BO3 8!B:5!D G:C WC [cWW][XIX] 10.43 49.03; 54.64 5.61 -20.74 0.12 22.83
Group_I_RNA 3BO3 9!B:4!D U:A WC [cWW][XX] 10.99 43.22; 52.57 9.35 -20.68 0.13 23.41
Group_I_RNA 3BO3 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 6.18 100.15; 146.88 46.73 -64.96 0.28 43.87
Group_I_RNA 3BO3 10!B:3!D G:U Wb [cWW][XXVIII] 10.5 36.21; 64.28 28.08 -16.67 0.14 14.87
Group_I_RNA 3BO3 10!B:87!B G:A rS [tSS][-] 8.2 75.03; 87.93 12.91 151.35 0.56 39.77
Group_I_RNA 3BO3 10!B:58!B G:A rpS(sb:O2*-N3) [---][-] 5.87 140.42; 94.08 46.34 -64.17 1.23 42.99
Group_I_RNA 3BO3 11!B:2!D U:A WC [cWW][XX] 10.89 54.85; 49.07 5.78 -10.28 0.38 8.6
Group_I_RNA 3BO3 12!B:1!D G:C WC [cWW][XIX] 10.97 53.49; 51.8 1.69 -10.35 0.16 10.58
Group_I_RNA 3BO3 12!B:168!B G:A rpS [cSS][-] 6.68 98.32; 144.01 45.69 -51.15 1.28 38.99
Group_I_RNA 3BO3 13!B:167!B C:A rpS(sb:O2*-N3) [cSS][-] 6.33 125.48; 90.58 34.9 -72.29 0.88 47.7
Group_I_RNA 3BO3 13!B:37!B C:G WC [cWW][XIX] 10.73 49.78; 55.3 5.53 -15.64 0.15 19.03
Group_I_RNA 3BO3 14!B:40!B C:U pfS*(bs:N3-O2*) [---][-] 8.53 165.43; 26.95 138.48 -9.57 0.57 40.33
Group_I_RNA 3BO3 14!B:39!B C:A pfS [cSW][-] 9.73 128.68; 35.21 93.47 -20.43 0.29 42.09
Group_I_RNA 3BO3 14!B:36!B C:G WC [cWW][XIX] 10.95 51.79; 48.08 3.71 -18.79 0.35 18.75
Group_I_RNA 3BO3 15!B:35!B U:A WC [cWW][XX] 11.33 48.66; 48.19 0.47 -11.04 0.24 10.22
Group_I_RNA 3BO3 16!B:34!B U:A WC [cWW][XX] 11.62 48.16; 48.32 0.16 -12.28 0.36 10.74
Group_I_RNA 3BO3 18!B:32!B C:G WC [cWW][XIX] 11.16 47.99; 57.39 9.4 -4.24 0.12 29.1
Group_I_RNA 3BO3 19!B:31!B G:C WC_Mo [cWW][XIX] 10.72 64.04; 54.98 9.06 -19.36 0.02 25.06
Group_I_RNA 3BO3 22!B:29!B G:C WC [cWW][XIX] 10.66 63.05; 49.97 13.08 2.61 0.58 17.45
Group_I_RNA 3BO3 23!B:28!B G:C WC_Mo [cWW][XIX] 11.04 57.1; 65.79 8.69 0.08 0.29 9.77
Group_I_RNA 3BO3 24!B:27!B G:A S [tSH][XI] 9.47 100.84; 9.94 90.9 -100.23 0.56 15.54
Group_I_RNA 3BO3 25!B:161!B A:A rWb* [tWW][I] 14.68 19.19; 30.65 11.45 133.38 0.39 21.46
Group_I_RNA 3BO3 26!B:148!B A:U rpS(sb:O2*-N3) [cSS][-] 5.63 99.05; 141.61 42.56 -48.53 0.23 28.33
Group_I_RNA 3BO3 27!B:163!B A:G rS [tSS][-] 8.49 65.37; 80.63 15.25 164.73 1.25 19.25
Group_I_RNA 3BO3 27!B:147!B A:C rpS(bs:O2-O2*) [cSS][-] 5.66 154.21; 100.54 53.68 -59.16 0.2 25.57
Group_I_RNA 3BO3 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 5.57 159.11; 152.02 7.1 -114.81 0.66 17.17
Group_I_RNA 3BO3 36!B:38!B G:G pS_1 [cSH][-] 9.47 116.75; 24.4 92.34 -30.89 0.36 44.34
Group_I_RNA 3BO3 41!B:143!B G:C WC [cWW][XIX] 10.26 55.41; 66.38 10.97 -2.08 0.12 8.73
Group_I_RNA 3BO3 42!B:142!B G:C WC [cWW][XIX] 11.06 50.35; 55.38 5.03 -4.43 0.82 17.22
Group_I_RNA 3BO3 43!B:141!B U:A WC [cWW][XX] 10.83 47.78; 53.13 5.35 1.82 0.06 2.48
Group_I_RNA 3BO3 44!B:140!B G:C WC [cWW][XIX] 10.41 53.59; 65.04 11.45 -7.48 0.11 12.06
Group_I_RNA 3BO3 45!B:139!B U:G Wb [cWW][XXVIII] 10.47 65.99; 44.14 21.85 -16.38 0.3 20.38
Group_I_RNA 3BO3 46!B:138!B C:G WC [cWW][XIX] 10.46 56.8; 56.46 0.34 -20.5 0.36 29.6
Group_I_RNA 3BO3 46!B:97!B C:A rpS(sb:O2*-N3) [cSS][-] 6.0 139.22; 91.45 47.78 -82.8 1.09 33.71
Group_I_RNA 3BO3 48!B:96!B A:C rpS(sb:O2*-N3) [cSS][-] 5.83 92.8; 153.07 60.26 -32.24 1.58 35.09
Group_I_RNA 3BO3 49!B:123!B A:G rS [tSS][-] 9.16 56.23; 82.86 26.63 153.72 0.66 24.1
Group_I_RNA 3BO3 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 5.84 142.74; 103.59 39.15 -36.88 1.04 7.15
Group_I_RNA 3BO3 50!B:125!B U:G rS(sp:O2*-O1P) [---][-] 8.69 167.23; 102.65 64.58 -100.72 0.63 40.36
Group_I_RNA 3BO3 51!B:93!B U:A WC [cWW][XX] 10.21 55.87; 61.49 5.62 3.45 0.12 9.5
Group_I_RNA 3BO3 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 8.92 14.54; 147.18 132.65 22.82 0.11 11.42
Group_I_RNA 3BO3 52!B:92!B C:G WC [cWW][XIX] 10.93 56.79; 51.59 5.2 2.13 0.07 7.86
Group_I_RNA 3BO3 53!B:91!B G:C WC_Mo [cWW][XIX] 11.26 65.05; 58.01 7.04 2.37 0.13 4.91
Group_I_RNA 3BO3 55!B:89!B C:G WC [cWW][XIX] 10.14 64.43; 50.52 13.91 -2.69 0.05 5.61
Group_I_RNA 3BO3 56!B:88!B G:C WC [cWW][XIX] 10.46 48.88; 55.31 6.43 -4.27 0.08 44.57
Group_I_RNA 3BO3 57!B:87!B A:A S [tSH][-] 9.85 89.93; 7.54 82.39 -24.36 0.69 7.27
Group_I_RNA 3BO3 58!B:86!B A:A S [tSH][-] 9.45 3.35; 90.84 87.49 39.7 0.35 7.84
Group_I_RNA 3BO3 59!B:85!B A:C Wb_mo [cWW][-] 11.48 20.01; 56.92 36.91 15.56 1.4 26.28
Group_I_RNA 3BO3 60!B:5!D C:C rS(ss:O2*-O2*)_1 [---][-] 5.53 138.8; 149.32 10.52 -148.93 0.82 21.79
Group_I_RNA 3BO3 60!B:84!B C:G WC [cWW][XIX] 10.83 48.63; 46.69 1.94 -17.14 0.69 33.77
Group_I_RNA 3BO3 61!B:192!C C:A rpS(bs:O2-O2*) [cSS][-] 5.52 100.85; 158.23 57.38 -53.93 0.11 24.28
Group_I_RNA 3BO3 61!B:83!B C:G WC [cWW][XIX] 10.79 52.97; 50.25 2.72 -0.01 0.17 17.15
Group_I_RNA 3BO3 62!B:191!C U:A rpS(sb:O2*-N3) [cSS][-] 6.25 138.72; 90.85 47.87 -82.15 0.37 31.33
Group_I_RNA 3BO3 62!B:81!B U:A rH_1 [tWH][XXIV] 9.76 39.49; 11.49 28.0 127.79 0.12 28.27
Group_I_RNA 3BO3 63!B:64!B A:A pS [cSH][-] 6.34 146.54; 40.22 106.32 18.09 0.29 14.51
Group_I_RNA 3BO3 65!B:80!B G:U Wb [cWW][XXVIII] 10.86 45.13; 59.5 14.37 -7.33 0.05 11.98
Group_I_RNA 3BO3 66!B:79!B C:G WC [cWW][XIX] 10.78 57.74; 55.33 2.41 -9.81 0.71 7.26
Group_I_RNA 3BO3 67!B:78!B G:C WC [cWW][XIX] 10.86 57.57; 55.31 2.26 -13.85 0.25 19.14
Group_I_RNA 3BO3 68!B:77!B C:G WC [cWW][XIX] 11.06 48.02; 52.63 4.61 -6.96 0.17 11.3
Group_I_RNA 3BO3 69!B:76!B C:G Wb [---][-] 10.84 62.21; 46.91 15.3 -2.01 0.11 5.1
Group_I_RNA 3BO3 70!B:75!B C:G Wb [---][-] 11.03 54.17; 40.16 14.01 6.36 0.32 5.27
Group_I_RNA 3BO3 83!B:192!C G:A rS [tSS][-] 8.25 79.88; 63.81 16.07 171.8 0.19 26.36
Group_I_RNA 3BO3 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 5.86 147.23; 142.66 4.57 -135.06 0.79 32.06
Group_I_RNA 3BO3 87!B:3!D A:U rpS(ss:O2*-O2*)_2 [---][-] 6.59 149.26; 113.03 36.23 -105.02 0.72 35.02
Group_I_RNA 3BO3 91!B:126!B C:U rS* [tHH][-] 12.8 13.99; 13.12 0.87 -113.51 0.0 25.08
Group_I_RNA 3BO3 92!B:125!B G:G S_1 [tSH][-] 11.62 6.88; 84.92 78.04 49.16 0.25 8.93
Group_I_RNA 3BO3 94!B:124!B G:U Wb [cWW][XXVIII] 10.48 43.59; 74.69 31.1 -3.02 0.08 12.12
Group_I_RNA 3BO3 95!B:123!B C:G WC [cWW][XIX] 11.16 48.67; 51.4 2.73 -9.41 0.21 18.86
Group_I_RNA 3BO3 96!B:122!B C:G WC [cWW][XIX] 10.67 51.96; 53.22 1.26 -0.08 0.08 6.49
Group_I_RNA 3BO3 97!B:139!B A:G fS(sb:O2*-N6) [---][-] 8.82 36.43; 106.69 70.26 176.77 2.62 36.7
Group_I_RNA 3BO3 98!B:139!B A:G rS [tSS][-] 8.31 55.06; 90.31 35.25 171.7 0.53 24.67
Group_I_RNA 3BO3 98!B:121!B A:A Wb [cWW][-] 14.03 24.12; 48.03 23.91 -2.88 0.44 26.87
Group_I_RNA 3BO3 100!B:119!B C:G WC [cWW][XIX] 11.3 45.66; 42.73 2.94 0.16 0.86 35.0
Group_I_RNA 3BO3 101!B:118!B U:U Wb_mo [cWW][XVI] 10.39 37.28; 52.23 14.95 -6.23 0.21 18.64
Group_I_RNA 3BO3 102!B:117!B U:A WC [cWW][XX] 10.28 56.79; 58.16 1.37 -10.44 0.3 18.73
Group_I_RNA 3BO3 103!B:116!B C:G WC [cWW][XIX] 10.99 49.11; 60.01 10.9 -13.65 0.07 20.58
Group_I_RNA 3BO3 104!B:115!B G:C WC [cWW][XIX] 11.4 48.76; 44.2 4.56 -4.68 0.05 18.63
Group_I_RNA 3BO3 105!B:114!B C:G WC_Mo [cWW][XIX] 10.64 60.01; 67.06 7.04 0.79 0.69 14.95
Group_I_RNA 3BO3 107!B:112!B G:C WC [cWW][XIX] 10.94 55.64; 47.91 7.74 2.27 0.24 20.29
Group_I_RNA 3BO3 1001!B:1014!B C:G WC [cWW][XIX] 11.21 53.25; 51.97 1.28 0.89 0.68 8.4
Group_I_RNA 3BO3 1002!B:1013!B C:G WC [cWW][XIX] 11.08 52.04; 44.0 8.04 3.31 0.32 4.5
Group_I_RNA 3BO3 128!B:178!B G:C WC [cWW][XIX] 10.75 50.07; 59.24 9.17 -16.57 0.1 18.32
Group_I_RNA 3BO3 128!B:129!B G:A pS_2 [cSH][-] 7.62 113.89; 64.16 49.73 -10.65 0.15 16.18
Group_I_RNA 3BO3 129!B:178!B A:C S [tSH][-] 10.21 8.4; 101.7 93.3 -3.96 0.48 13.91
Group_I_RNA 3BO3 130!B:206!C G:G H_1 [cWH][VI] 11.76 24.15; 61.02 36.86 -5.11 0.2 22.13
Group_I_RNA 3BO3 130!B:177!B G:C WC [cWW][XIX] 10.53 55.92; 60.09 4.16 -10.51 0.09 16.69
Group_I_RNA 3BO3 131!B:177!B A:C H_1 [---][-] 7.22 60.72; 88.2 27.48 -19.07 2.65 11.16
Group_I_RNA 3BO3 131!B:176!B A:U WC [cWW][XX] 10.53 54.22; 56.18 1.96 -7.05 0.01 9.82
Group_I_RNA 3BO3 132!B:175!B C:G WC [cWW][XIX] 10.63 50.23; 58.38 8.15 -7.68 0.23 15.67
Group_I_RNA 3BO3 133!B:174!B U:A WC [cWW][XX] 10.93 48.75; 51.6 2.85 -14.39 0.13 20.88
Group_I_RNA 3BO3 134!B:173!B A:U WC [cWW][XX] 11.02 47.25; 55.75 8.5 -4.83 0.43 12.32
Group_I_RNA 3BO3 135!B:170!B G:G rH_1 [tWH][VII] 11.31 38.34; 29.51 8.83 -171.38 0.46 9.91
Group_I_RNA 3BO3 144!B:166!B C:G WC [cWW][XIX] 10.8 55.76; 50.86 4.9 -0.4 0.1 3.23
Group_I_RNA 3BO3 145!B:165!B A:U WC [cWW][XX] 10.66 59.61; 53.81 5.8 -7.27 0.27 11.7
Group_I_RNA 3BO3 146!B:164!B C:G WC [cWW][XIX] 10.56 53.84; 49.0 4.84 -10.79 0.31 17.46
Group_I_RNA 3BO3 147!B:163!B C:G WC [cWW][XIX] 10.87 50.93; 49.8 1.13 -6.07 0.1 7.95
Group_I_RNA 3BO3 148!B:161!B U:A rH_1 [tWH][XXIV] 10.18 28.36; 15.01 13.36 158.57 0.28 6.81
Group_I_RNA 3BO3 150!B:162!B A:U rH*_1 [---][-] 12.38 45.6; 38.59 7.01 39.32 0.64 78.49
Group_I_RNA 3BO3 151!B:160!B G:U Wb [cWW][XXVIII] 10.6 39.54; 63.6 24.06 -10.44 0.29 15.07
Group_I_RNA 3BO3 152!B:159!B G:C WC [cWW][XIX] 10.82 56.62; 50.39 6.23 -12.3 0.05 16.3
Group_I_RNA 3BO3 153!B:158!B C:G WC [cWW][XIX] 10.51 57.91; 56.83 1.08 -10.52 0.04 18.74
Group_I_RNA 3BO3 168!B:1!D A:C fS(sb:O2*-N1)_1 [tSS][-] 8.44 55.9; 87.41 31.5 178.67 0.75 29.55
Group_I_RNA 3BO3 172!B:173!B A:U pS* [cHS][-] 6.93 138.55; 37.86 100.69 12.8 1.09 17.67
Group_I_RNA 3BO3 180!B:204!C G:C WC [cWW][XIX] 10.65 53.25; 55.35 2.1 -8.65 0.14 8.87
Group_I_RNA 3BO3 181!B:203!C G:C WC [cWW][XIX] 10.62 47.22; 53.58 6.36 -8.11 0.36 12.16
Group_I_RNA 3BO3 182!B:202!C G:A S [tSH][XI] 9.78 88.41; 3.28 85.13 124.26 0.0 7.29
Group_I_RNA 3BO3 183!B:201!C A:A rS* [tHH][-] 10.5 22.45; 15.21 7.24 -130.84 0.07 14.05
Group_I_RNA 3BO3 184!B:197!C G:C WC [cWW][XIX] 10.77 50.59; 55.25 4.65 4.43 0.73 11.0
Group_I_RNA 3BO3 185!B:196!C U:A WC [cWW][XX] 11.8 38.24; 49.73 11.48 9.31 0.75 12.77
Group_I_RNA 3BO3 186!B:195!C G:C Wb* [---][-] 11.04 69.16; 49.96 19.2 -5.3 0.4 15.05
Group_I_RNA 3BO3 187!B:194!C G:C WC [cWW][XIX] 11.2 45.82; 49.07 3.25 7.84 0.79 9.9
Group_I_RNA 3BO3 188!B:193!C C:G Wb [---][-] 11.17 55.89; 41.99 13.9 7.81 0.41 6.71
Group_I_RNA 3BO3 189!B:192!C G:A S [tSH][XI] 9.69 96.9; 13.53 83.37 -103.33 1.15 11.35
Group_I_RNA 3BO3 189!B:191!C G:A S(sb:O2*-N7) [---][-] 7.79 85.06; 31.39 53.67 -169.08 1.68 26.7