Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3BO4 BPC Identified: 115 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 3BO4 4!B:9!D G:C WC [cWW][XIX] 10.85 44.6; 50.86 6.27 -3.07 0.74 11.57
Group_I_RNA 3BO4 5!B:8!D G:C WC [cWW][XIX] 10.75 45.46; 57.18 11.73 -11.23 0.25 11.78
Group_I_RNA 3BO4 6!B:7!D C:G WC [cWW][XIX] 11.19 48.38; 52.81 4.44 -9.36 0.4 8.67
Group_I_RNA 3BO4 7!B:6!D C:G WC [cWW][XIX] 10.73 53.13; 47.38 5.75 -4.6 0.0 6.76
Group_I_RNA 3BO4 8!B:5!D G:C WC [cWW][XIX] 10.31 52.8; 54.45 1.65 -24.52 0.43 34.92
Group_I_RNA 3BO4 9!B:4!D* U:A WC [cWW][XX]; Wb* [---][-] 11.06 44.0; 55.49 11.49 -24.89 0.68 31.92
Group_I_RNA 3BO4 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 6.14 98.36; 148.59 50.23 -67.85 0.13 46.37
Group_I_RNA 3BO4 10!B:3!D G:T Wb [---][-] 10.64 41.42; 64.22 22.8 -16.06 0.43 18.13
Group_I_RNA 3BO4 10!B:58!B G:A rpS(sb:O2*-N3) [---][-] 5.84 143.02; 91.93 51.09 -66.83 1.03 41.8
Group_I_RNA 3BO4 11!B:2!D U:A WC [cWW][XX] 10.73 55.08; 50.42 4.66 -3.57 0.35 0.55
Group_I_RNA 3BO4 12!B:1!D G:C WC [cWW][XIX] 11.02 52.65; 49.9 2.74 -15.55 0.36 15.82
Group_I_RNA 3BO4 12!B:168!B G:A rpS [cSS][-] 6.86 96.78; 140.28 43.5 -46.89 1.48 51.18
Group_I_RNA 3BO4 13!B:167!B C:A rpS(sb:O2*-N3) [cSS][-] 5.78 131.36; 94.94 36.42 -69.09 1.34 52.93
Group_I_RNA 3BO4 13!B:37!B C:G WC [cWW][XIX] 10.8 52.35; 52.06 0.3 -23.07 0.43 25.42
Group_I_RNA 3BO4 14!B:39!B C:A pfS [cSW][-] 9.49 125.74; 38.49 87.25 -26.85 0.28 49.28
Group_I_RNA 3BO4 14!B:36!B C:G WC [cWW][XIX] 10.94 48.7; 51.81 3.11 -24.66 0.57 26.43
Group_I_RNA 3BO4 15!B:35!B U:A WC [cWW][XX] 10.85 48.73; 49.6 0.87 -21.48 0.79 19.68
Group_I_RNA 3BO4 16!B:34!B U:A WC [cWW][XX] 10.55 59.43; 50.71 8.72 -15.4 0.65 15.6
Group_I_RNA 3BO4 17!B:33!B G:C WC [cWW][XIX] 10.78 51.73; 52.69 0.95 -14.15 0.45 15.79
Group_I_RNA 3BO4 18!B:32!B C:G WC [cWW][XIX] 10.35 60.07; 47.96 12.11 -18.97 0.77 27.9
Group_I_RNA 3BO4 19!B:31!B G:C WC [cWW][XIX] 10.61 61.11; 52.91 8.2 -19.65 0.21 34.63
Group_I_RNA 3BO4 21!B:30!B C:A Wb* [cWW][-] 10.62 44.78; 73.61 28.83 -15.3 0.05 50.32
Group_I_RNA 3BO4 22!B:29!B G:C WC [cWW][XIX] 11.02 56.98; 51.08 5.9 -2.89 0.17 11.74
Group_I_RNA 3BO4 23!B:28!B G:C WC [cWW][XIX] 10.9 52.36; 60.37 8.01 1.16 0.09 16.46
Group_I_RNA 3BO4 24!B:27!B G:A S [tSH][XI] 9.39 97.41; 12.59 84.82 -122.55 0.46 16.25
Group_I_RNA 3BO4 24!B:26!B G:A S(sb:O2*-N7) [---][-] 7.86 88.9; 31.39 57.51 177.23 2.72 24.0
Group_I_RNA 3BO4 25!B:161!B A:A rWb* [tWW][I] 14.12 20.46; 33.75 13.29 151.25 0.09 18.52
Group_I_RNA 3BO4 26!B:163!B A:G fS(sb:O2*-N6) [---][-] 9.15 37.43; 108.84 71.41 165.02 1.62 30.72
Group_I_RNA 3BO4 26!B:148!B A:U rpS(sb:O2*-N3) [cSS][-] 5.66 95.43; 142.9 47.47 -57.62 0.18 30.44
Group_I_RNA 3BO4 27!B:163!B A:G rS [tSS][-] 8.44 59.41; 87.67 28.26 156.76 1.43 22.86
Group_I_RNA 3BO4 27!B:147!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.26 142.46; 106.28 36.18 -52.36 0.04 28.99
Group_I_RNA 3BO4 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 6.02 158.21; 150.52 7.69 -134.81 1.17 17.57
Group_I_RNA 3BO4 36!B:38!B G:G pS_1 [cSH][-] 9.7 116.37; 22.14 94.24 -34.4 0.92 49.17
Group_I_RNA 3BO4 41!B:143!B G:C WC [cWW][XIX] 10.55 61.9; 58.88 3.03 -0.5 0.05 4.21
Group_I_RNA 3BO4 42!B:142!B G:C WC [cWW][XIX] 10.52 52.44; 63.57 11.13 -2.37 0.38 16.53
Group_I_RNA 3BO4 43!B:141!B U:A WC [cWW][XX] 10.7 51.32; 51.16 0.16 5.11 0.06 5.23
Group_I_RNA 3BO4 44!B:140!B G:C WC_Mo [cWW][XIX] 10.83 62.92; 56.39 6.53 -12.96 0.18 23.0
Group_I_RNA 3BO4 45!B:139!B U:G Wb [cWW][XXVIII] 10.26 70.61; 47.55 23.06 -17.95 0.08 23.71
Group_I_RNA 3BO4 46!B:138!B C:G WC [cWW][XIX] 11.53 45.24; 48.65 3.41 -15.24 0.55 22.87
Group_I_RNA 3BO4 46!B:97!B C:A rpS(sb:O2*-N3) [cSS][-] 5.81 127.78; 99.79 27.99 -67.88 0.36 38.73
Group_I_RNA 3BO4 47!B:136!B A:A rH [tWH][V] 12.54 24.18; 20.88 3.3 -148.7 0.17 13.05
Group_I_RNA 3BO4 48!B:96!B A:C rpS(sb:O2*-N3) [cSS][-] 6.13 89.63; 149.87 60.25 -8.54 0.74 27.17
Group_I_RNA 3BO4 49!B:123!B A:G rS [tSS][-] 8.53 53.9; 92.24 38.34 156.32 0.71 23.23
Group_I_RNA 3BO4 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 6.0 141.52; 105.58 35.94 -37.19 1.82 3.26
Group_I_RNA 3BO4 51!B:93!B U:A WC [cWW][XX] 10.0 57.17; 65.76 8.59 1.54 0.29 11.99
Group_I_RNA 3BO4 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 8.86 16.17; 147.38 131.22 21.76 0.09 7.66
Group_I_RNA 3BO4 52!B:92!B C:G WC [cWW][XIX] 10.66 54.98; 53.59 1.39 1.67 0.39 8.7
Group_I_RNA 3BO4 53!B:91!B G:C WC [cWW][XIX] 11.15 56.87; 43.84 13.03 -1.34 0.11 4.64
Group_I_RNA 3BO4 54!B:90!B G:C WC [cWW][XIX] 10.54 49.89; 56.0 6.11 5.4 0.2 8.74
Group_I_RNA 3BO4 55!B:89!B C:G WC [cWW][XIX] 10.24 58.91; 51.99 6.92 -0.36 0.23 10.0
Group_I_RNA 3BO4 56!B:88!B G:C WC [cWW][XIX] 10.51 47.74; 58.54 10.8 -6.6 0.12 37.84
Group_I_RNA 3BO4 57!B:87!B A:A S [tSH][-] 9.88 89.11; 7.76 81.35 -29.22 0.37 10.21
Group_I_RNA 3BO4 58!B:86!B A:A S [tSH][-] 9.36 2.05; 88.69 86.65 59.28 0.03 4.21
Group_I_RNA 3BO4 60!B:5!D C:C rS(ss:O2*-O2*)_1 [---][-] 5.65 146.03; 150.54 4.5 -136.78 1.04 16.39
Group_I_RNA 3BO4 60!B:84!B C:G WC [cWW][XIX] 10.39 53.32; 47.89 5.44 -23.63 0.35 29.9
Group_I_RNA 3BO4 61!B:192!C C:A rpS(bs:O2-O2*) [cSS][-] 5.58 100.31; 158.97 58.66 -79.46 0.6 23.67
Group_I_RNA 3BO4 61!B:83!B C:G WC [cWW][XIX] 10.63 54.47; 51.41 3.06 -8.7 0.45 21.45
Group_I_RNA 3BO4 62!B:191!C U:A rpS(sb:O2*-N3) [cSS][-] 6.18 137.2; 88.83 48.37 -81.49 0.2 35.0
Group_I_RNA 3BO4 62!B:81!B U:A rH_1 [tWH][XXIV] 9.6 37.05; 15.07 21.98 141.25 0.11 21.46
Group_I_RNA 3BO4 63!B:64!B A:A pS [cSH][-] 6.83 140.16; 33.89 106.27 16.98 0.11 11.21
Group_I_RNA 3BO4 65!B:80!B G:U Wb [cWW][XXVIII] 10.44 45.92; 60.84 14.92 -6.76 0.6 14.25
Group_I_RNA 3BO4 66!B:79!B C:G WC [cWW][XIX] 10.61 54.05; 48.58 5.48 -11.41 0.09 14.31
Group_I_RNA 3BO4 67!B:78!B G:C Wb [---][-] 10.31 47.99; 64.8 16.81 -17.2 0.05 21.87
Group_I_RNA 3BO4 68!B:77!B C:G WC [cWW][XIX] 10.69 55.59; 48.82 6.76 -13.24 0.07 16.25
Group_I_RNA 3BO4 69!B:76!B C:G Wb [---][-] 10.52 59.63; 46.4 13.23 -10.41 0.07 16.78
Group_I_RNA 3BO4 70!B:75!B C:G Wb [---][-] 10.46 63.79; 47.72 16.07 -0.72 0.22 6.11
Group_I_RNA 3BO4 83!B:192!C G:A rS [tSS][-] 8.05 81.92; 70.19 11.73 169.33 0.07 22.39
Group_I_RNA 3BO4 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 5.94 156.48; 154.63 1.85 -123.73 0.78 25.91
Group_I_RNA 3BO4 91!B:126!B C:U rS* [tHH][-] 12.88 27.71; 12.71 15.0 -80.43 1.28 25.61
Group_I_RNA 3BO4 92!B:125!B G:G S_1 [tSH][-] 11.39 7.78; 85.71 77.93 42.16 0.53 13.24
Group_I_RNA 3BO4 94!B:124!B G:U Wb [cWW][XXVIII] 10.55 43.59; 70.89 27.3 -3.91 0.27 5.98
Group_I_RNA 3BO4 95!B:123!B C:G WC [cWW][XIX] 10.78 53.8; 58.55 4.75 -7.66 0.44 20.1
Group_I_RNA 3BO4 96!B:122!B C:G WC [cWW][XIX] 10.9 46.51; 55.8 9.29 3.1 0.05 6.12
Group_I_RNA 3BO4 98!B:139!B A:G rS [tSS][-] 8.15 58.28; 95.39 37.11 -179.4 0.36 25.93
Group_I_RNA 3BO4 98!B:121!B A:A Wb [cWW][-] 13.83 30.25; 55.15 24.9 -1.18 0.57 28.34
Group_I_RNA 3BO4 99!B:120!B G:A WC [cWW][VIII] 12.78 48.69; 52.69 4.0 -4.89 0.59 29.17
Group_I_RNA 3BO4 100!B:119!B C:G WC [cWW][XIX] 10.59 49.17; 57.38 8.21 -5.05 0.82 34.59
Group_I_RNA 3BO4 102!B:117!B U:A WC [cWW][XX] 10.52 54.19; 56.88 2.69 -4.21 0.52 12.79
Group_I_RNA 3BO4 103!B:116!B C:G WC_Mo [cWW][XIX] 10.63 65.08; 57.04 8.04 -7.09 0.47 6.94
Group_I_RNA 3BO4 105!B:114!B C:G WC [cWW][XIX] 10.86 54.34; 63.74 9.41 -4.7 0.05 13.32
Group_I_RNA 3BO4 107!B:112!B G:C WC [cWW][XIX] 10.81 60.24; 50.95 9.29 -7.79 0.64 22.07
Group_I_RNA 3BO4 1001!B:1014!B C:G WC [cWW][XIX] 11.13 44.36; 54.31 9.95 -7.56 0.12 14.56
Group_I_RNA 3BO4 1002!B:1013!B C:G Wb [---][-] 10.75 64.6; 45.24 19.36 -10.97 0.05 12.86
Group_I_RNA 3BO4 127!B:132!B A:C rH* [---][-] 13.41 26.9; 24.8 2.1 -156.15 0.48 12.37
Group_I_RNA 3BO4 128!B:178!B G:C WC [cWW][XIX] 10.29 52.7; 62.41 9.71 -12.71 1.23 3.86
Group_I_RNA 3BO4 128!B:129!B G:A pS_2 [cSH][-] 7.52 115.25; 60.72 54.53 -12.5 0.31 10.34
Group_I_RNA 3BO4 129!B:178!B A:C S [tSH][-] 9.7 11.42; 106.5 95.08 3.84 0.05 8.33
Group_I_RNA 3BO4 130!B:206!C G:G H_1 [cWH][VI] 11.7 30.8; 59.97 29.17 -17.7 0.48 15.81
Group_I_RNA 3BO4 130!B:177!B G:C WC [cWW][XIX] 11.29 50.66; 49.35 1.31 6.08 0.03 8.95
Group_I_RNA 3BO4 131!B:176!B A:U WC [cWW][XX] 10.58 50.33; 56.56 6.23 -2.09 0.07 9.19
Group_I_RNA 3BO4 132!B:175!B C:G WC [cWW][XIX] 10.61 50.54; 55.5 4.96 -4.27 0.19 15.15
Group_I_RNA 3BO4 132!B:172!B C:A rH* [---][-] 12.47 12.39; 49.91 37.52 148.63 1.4 16.28
Group_I_RNA 3BO4 133!B:174!B U:A WC [cWW][XX] 10.63 59.11; 51.29 7.81 -13.47 0.3 14.72
Group_I_RNA 3BO4 134!B:173!B A:U WC [cWW][XX] 11.27 54.09; 54.72 0.63 -8.86 0.16 11.91
Group_I_RNA 3BO4 135!B:170!B G:G rH_1 [tWH][VII] 11.52 30.34; 32.83 2.5 174.73 0.27 16.41
Group_I_RNA 3BO4 144!B:166!B C:G WC [cWW][XIX] 10.89 55.9; 54.02 1.88 2.3 0.13 4.6
Group_I_RNA 3BO4 145!B:165!B A:U WC [cWW][XX] 10.3 58.78; 58.25 0.53 -6.36 0.43 13.19
Group_I_RNA 3BO4 146!B:164!B C:G WC [cWW][XIX] 10.75 55.02; 47.02 8.0 -10.18 0.27 21.31
Group_I_RNA 3BO4 147!B:163!B C:G WC [cWW][XIX] 10.72 55.9; 52.06 3.84 -11.9 0.26 14.56
Group_I_RNA 3BO4 148!B:161!B U:A rH_1 [tWH][XXIV] 9.97 35.03; 17.66 17.36 111.81 0.39 21.2
Group_I_RNA 3BO4 151!B:160!B G:U Wb [cWW][XXVIII] 10.54 35.02; 66.3 31.28 -8.86 0.38 15.03
Group_I_RNA 3BO4 152!B:159!B G:C WC [cWW][XIX] 10.88 50.54; 56.74 6.21 -10.08 0.16 15.86
Group_I_RNA 3BO4 153!B:158!B C:G WC [cWW][XIX] 10.61 57.02; 49.89 7.13 -3.86 0.04 8.64
Group_I_RNA 3BO4 168!B:1!D A:C fS(sb:O2*-N1)_1 [tSS][-] 8.43 51.82; 87.14 35.31 176.51 0.68 38.65
Group_I_RNA 3BO4 172!B:173!B A:U pS* [cHS][-] 7.02 138.87; 37.58 101.28 11.21 1.14 19.0
Group_I_RNA 3BO4 180!B:204!C G:C WC [cWW][XIX] 10.87 53.0; 49.08 3.92 -5.3 0.17 11.83
Group_I_RNA 3BO4 181!B:203!C G:C WC [cWW][XIX] 10.96 54.72; 46.66 8.06 -6.28 0.24 20.17
Group_I_RNA 3BO4 182!B:202!C G:A S [tSH][XI] 9.87 94.94; 6.33 88.6 20.03 0.36 15.23
Group_I_RNA 3BO4 183!B:201!C A:A rS* [tHH][-] 10.36 21.66; 16.5 5.16 -119.97 0.06 18.84
Group_I_RNA 3BO4 184!B:197!C G:C Wb [---][-] 10.61 46.22; 59.91 13.69 6.71 0.14 11.36
Group_I_RNA 3BO4 185!B:196!C U:A WC [cWW][XX] 10.91 49.52; 50.2 0.68 1.03 0.18 5.0
Group_I_RNA 3BO4 186!B:195!C G:C WC [cWW][XIX] 10.77 55.82; 55.66 0.15 -11.83 0.25 12.5
Group_I_RNA 3BO4 187!B:194!C G:C WC [cWW][XIX] 11.34 40.37; 49.0 8.63 -2.36 0.47 16.09
Group_I_RNA 3BO4 188!B:193!C C:G WC [cWW][XIX] 10.9 55.61; 49.97 5.64 -1.8 0.27 8.18
Group_I_RNA 3BO4 189!B:192!C G:A S [tSH][XI] 9.65 98.63; 14.06 84.57 -81.97 0.78 16.31