Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3CQS BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3CQS 2!A:13!B C:G WC [cWW][XIX] 10.47 56.33; 56.88 0.55 -15.27 0.08 24.32
HP_ribozyme 3CQS 3!A:12!B C:G WC [cWW][XIX] 10.54 56.27; 54.95 1.32 -12.6 0.01 13.74
HP_ribozyme 3CQS 4!A:11!B C:G WC [cWW][XIX] 10.53 60.55; 55.35 5.21 -3.38 0.04 4.91
HP_ribozyme 3CQS 5!A:9!B A:A S [tSH][-] 10.83 78.35; 1.83 76.52 -143.6 0.41 7.26
HP_ribozyme 3CQS 6!A:25!B G:C WC [cWW][XIX] 10.33 55.07; 59.93 4.86 -11.95 0.32 13.43
HP_ribozyme 3CQS 7!A:8!B U:G S*_1 [tHS][-] 11.43 7.69; 88.01 80.32 85.03 1.41 23.78
HP_ribozyme 3CQS 8!A:7!B C:A Wb* [cWW][-] 11.8 40.58; 69.74 29.16 6.81 0.2 30.25
HP_ribozyme 3CQS 9!A:6!B C:G WC [cWW][XIX] 10.91 55.29; 57.75 2.46 -3.69 0.4 11.95
HP_ribozyme 3CQS 10!A:5!B A:U WC [cWW][XX] 11.0 57.61; 48.73 8.88 -6.63 0.04 9.52
HP_ribozyme 3CQS 11!A:4!B C:G Wb [---][-] 10.04 72.43; 54.87 17.56 -15.76 0.23 20.94
HP_ribozyme 3CQS 12!A:3!B C:G WC [cWW][XIX] 10.57 62.74; 52.36 10.38 -11.41 0.35 17.7
HP_ribozyme 3CQS 13!A:2!B G:C WC [cWW][XIX] 10.46 60.3; 59.93 0.37 -5.99 0.03 9.89
HP_ribozyme 3CQS 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.53 91.76; 154.33 62.56 -67.76 0.06 50.71
HP_ribozyme 3CQS 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.44 150.67; 93.52 57.16 -73.44 1.61 49.67
HP_ribozyme 3CQS 15!B:49!C G:C WC [cWW][XIX] 10.7 54.12; 57.39 3.28 -11.03 0.31 10.06
HP_ribozyme 3CQS 16!B:48!C G:C WC [cWW][XIX] 10.48 50.88; 59.01 8.12 -13.75 0.03 18.34
HP_ribozyme 3CQS 17!B:47!C C:G WC [cWW][XIX] 10.66 54.87; 58.03 3.15 -10.5 0.22 14.94
HP_ribozyme 3CQS 18!B:46!C A:U WC [cWW][XX] 10.36 57.94; 60.42 2.48 -4.99 0.05 10.66
HP_ribozyme 3CQS 19!B:45!C G:C WC [cWW][XIX] 10.39 56.37; 58.57 2.2 2.77 0.2 3.49
HP_ribozyme 3CQS 20!B:44!C A:C Wb* [cWW][-] 10.44 75.67; 54.34 21.33 2.57 0.32 17.3
HP_ribozyme 3CQS 21!B:43!C G:A S [tSH][XI] 9.37 96.95; 2.87 94.07 43.86 0.23 7.54
HP_ribozyme 3CQS 22!B:41!C A:U rH_1 [tWH][XXIV] 9.79 20.6; 32.09 11.49 -166.74 0.23 11.05
HP_ribozyme 3CQS 23!B:40!C A:A rH [tWH][V] 12.53 12.81; 30.33 17.52 173.3 0.69 21.07
HP_ribozyme 3CQS 26!B:36!C A:G WC [cWW][VIII] 12.71 47.28; 46.65 0.62 -12.08 0.13 18.96
HP_ribozyme 3CQS 27!B:36!C C:G WC_Mo [cWW][XIX] 10.1 76.56; 60.09 16.47 -22.5 2.24 14.45
HP_ribozyme 3CQS 27!B:35!C C:G WC [cWW][XIX] 10.55 53.58; 55.77 2.19 -19.86 0.37 25.16
HP_ribozyme 3CQS 28!B:34!C A:U WC [cWW][XX] 10.51 53.68; 55.48 1.79 -15.13 0.11 19.46
HP_ribozyme 3CQS 29!B:33!C C:G WC [cWW][XIX] 10.6 53.72; 55.77 2.04 -12.13 0.12 15.08
HP_ribozyme 3CQS 30!B:32!C G:C WC [cWW][XIX] 10.61 54.99; 55.83 0.84 -10.61 0.25 9.0
HP_ribozyme 3CQS 31!B:31!C A:U WC [cWW][XX] 10.42 61.61; 54.76 6.85 -1.34 0.06 6.58