Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3CR1 BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_Ribozyme 3CR1 2!A:13!B C:G WC [cWW][XIX] 10.52 55.87; 55.87 0.0 -6.27 0.05 18.74
HP_Ribozyme 3CR1 3!A:12!B C:G WC [cWW][XIX] 10.52 57.05; 55.08 1.97 -6.71 0.01 8.57
HP_Ribozyme 3CR1 4!A:11!B C:G WC [cWW][XIX] 10.49 59.8; 52.74 7.06 0.74 0.15 2.96
HP_Ribozyme 3CR1 5!A:9!B A:A S [tSH][-] 10.43 78.37; 2.66 75.71 -113.32 0.65 11.24
HP_Ribozyme 3CR1 6!A:25!B G:C WC [cWW][XIX] 10.45 54.81; 55.68 0.86 -12.42 0.97 23.71
HP_Ribozyme 3CR1 7!A:8!B U:G S*_1 [tHS][-] 11.22 9.62; 98.42 88.8 28.72 0.6 12.46
HP_Ribozyme 3CR1 8!A:7!B C:A Wb* [cWW][-] 10.98 46.69; 69.11 22.42 -4.21 0.08 28.92
HP_Ribozyme 3CR1 9!A:6!B C:G WC [cWW][XIX] 10.47 55.37; 58.81 3.45 -5.23 0.19 16.88
HP_Ribozyme 3CR1 10!A:5!B A:U WC [cWW][XX] 10.6 59.18; 49.3 9.88 -12.0 0.23 12.87
HP_Ribozyme 3CR1 11!A:4!B C:G WC [cWW][XIX] 10.59 58.06; 54.25 3.81 -7.48 0.09 13.59
HP_Ribozyme 3CR1 12!A:3!B C:G WC [cWW][XIX] 10.29 56.69; 56.24 0.44 -12.2 0.21 14.24
HP_Ribozyme 3CR1 13!A:2!B G:C WC [cWW][XIX] 10.56 57.38; 57.49 0.1 -5.43 0.04 9.78
HP_Ribozyme 3CR1 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.45 94.23; 150.53 56.3 -63.42 0.74 43.1
HP_Ribozyme 3CR1 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.43 148.95; 92.73 56.22 -67.45 1.46 44.86
HP_Ribozyme 3CR1 15!B:49!C G:C WC [cWW][XIX] 10.58 54.32; 56.63 2.31 -8.76 0.29 11.05
HP_Ribozyme 3CR1 16!B:48!C G:C WC [cWW][XIX] 10.62 52.2; 53.91 1.71 -11.97 0.12 15.62
HP_Ribozyme 3CR1 17!B:47!C C:G WC [cWW][XIX] 10.65 53.97; 55.06 1.09 -7.98 0.28 13.27
HP_Ribozyme 3CR1 18!B:46!C A:U WC [cWW][XX] 10.3 58.78; 59.48 0.7 -6.78 0.05 14.97
HP_Ribozyme 3CR1 19!B:45!C G:C WC [cWW][XIX] 10.28 56.97; 59.27 2.3 -1.51 0.05 13.88
HP_Ribozyme 3CR1 20!B:44!C A:C Wb* [cWW][-] 10.55 75.24; 46.67 28.57 0.23 0.03 13.54
HP_Ribozyme 3CR1 21!B:43!C G:A S [tSH][XI] 9.53 98.66; 3.21 95.45 39.97 0.15 5.34
HP_Ribozyme 3CR1 22!B:41!C A:U rH_1 [tWH][XXIV] 9.62 21.15; 30.26 9.11 -160.03 0.49 14.59
HP_Ribozyme 3CR1 23!B:40!C A:A rH [tWH][V] 12.49 11.84; 27.76 15.92 173.43 0.48 23.87
HP_Ribozyme 3CR1 26!B:36!C A:G WC [cWW][VIII] 12.7 45.38; 44.37 1.01 -12.05 0.26 23.84
HP_Ribozyme 3CR1 27!B:35!C C:G WC [cWW][XIX] 10.63 53.24; 53.12 0.12 -20.64 0.43 25.28
HP_Ribozyme 3CR1 28!B:34!C A:U WC [cWW][XX] 10.48 54.23; 54.81 0.57 -21.02 0.04 23.53
HP_Ribozyme 3CR1 29!B:33!C C:G WC [cWW][XIX] 10.55 56.09; 55.65 0.44 -13.06 0.45 18.21
HP_Ribozyme 3CR1 30!B:32!C G:C WC [cWW][XIX] 10.73 52.69; 54.05 1.36 -13.72 0.43 19.33
HP_Ribozyme 3CR1 31!B:31!C A:U WC [cWW][XX] 10.59 57.72; 52.55 5.16 -1.55 0.03 11.76