Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3CUL BPC Identified: 76 Ambiguities: 2
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 3CUL 1!C:19!C G:C WC [cWW][XIX] 10.59 50.37; 56.2 5.83 14.43 0.04 10.52
RNA_aptamer 3CUL 2!C:17!C G:U Wb [cWW][XXVIII] 10.71 40.43; 68.75 28.32 -7.75 0.44 13.56
RNA_aptamer 3CUL 3!C:16!C A:U WC [cWW][XX] 10.47 55.89; 57.5 1.61 -12.69 0.33 18.93
RNA_aptamer 3CUL 4!C:15!C U:A WC [cWW][XX] 10.16 56.96; 62.55 5.59 -9.17 0.01 18.27
RNA_aptamer 3CUL 5!C:14!C G:C WC [cWW][XIX] 10.53 58.09; 54.82 3.27 -1.17 0.09 3.56
RNA_aptamer 3CUL 6!C:13!C G:C WC [cWW][XIX] 10.5 51.64; 57.0 5.36 -3.22 0.17 12.33
RNA_aptamer 3CUL 7!C:12!C C:G WC [cWW][XIX] 10.49 58.84; 46.72 12.12 5.99 0.24 11.45
RNA_aptamer 3CUL 8!C:11!C G:A S [tSH][XI] 9.2 108.37; 10.43 97.94 -81.76 0.92 29.69
RNA_aptamer 3CUL 8!C:10!C G:A S(sb:O2*-N7) [---][-] 7.42 95.86; 34.93 60.93 -172.03 2.01 27.97
RNA_aptamer 3CUL 20!C:51!C C:G WC [cWW][XIX] 10.67 54.34; 56.47 2.14 -1.44 0.02 5.64
RNA_aptamer 3CUL 21!C:54!C G:A rS [tSS][-] 8.48 89.16; 55.51 33.65 145.46 1.14 51.01
RNA_aptamer 3CUL 21!C:50!C G:C WC [cWW][XIX] 10.53 56.29; 55.66 0.63 -15.43 0.55 40.83
RNA_aptamer 3CUL 22!C:49!C C:G WC [cWW][XIX] 10.71 57.4; 55.16 2.24 -9.61 0.11 19.55
RNA_aptamer 3CUL 23!C:92!C A:A fS(sb:O2*-N1)_1 [---][-] 8.47 92.15; 58.14 34.01 160.37 2.39 46.28
RNA_aptamer 3CUL 23!C:48!C A:G WC [cWW][VIII] 12.89 46.72; 44.5 2.22 3.99 0.16 6.23
RNA_aptamer 3CUL 24!C:47!C G:U sWb* [---][-] 12.8 53.69; 10.17 43.51 -45.41 0.99 27.84
RNA_aptamer 3CUL 25!C:44!C G:U Wb [cWW][XXVIII] 10.47 39.94; 67.12 27.19 0.52 0.32 5.91
RNA_aptamer 3CUL 26!C:43!C C:G WC [cWW][XIX] 10.5 55.68; 52.38 3.3 -4.32 0.03 15.5
RNA_aptamer 3CUL 27!C:42!C C:G WC [cWW][XIX] 10.69 51.19; 51.67 0.48 -3.19 0.38 14.56
RNA_aptamer 3CUL 28!C:41!C C:G WC [cWW][XIX] 10.5 53.03; 52.79 0.23 3.41 0.31 6.05
RNA_aptamer 3CUL 29!C:40!C C:G WC [cWW][XIX] 10.61 51.39; 50.38 1.01 2.6 0.27 6.56
RNA_aptamer 3CUL 51!C:52!C G:U pS* [cHS][-] 6.31 133.93; 61.33 72.6 53.61 1.19 69.13
RNA_aptamer 3CUL 55!C:91!C G:C WC [cWW][XIX] 10.56 54.53; 56.78 2.24 -1.66 0.01 10.3
RNA_aptamer 3CUL 56!C:90!C G:C WC [cWW][XIX] 10.39 57.95; 54.81 3.14 -11.57 0.19 18.04
RNA_aptamer 3CUL 57!C:89!C* U:G WC [---][-]; WC_mo [---][-] 11.75 45.52; 52.37 6.84 -8.29 0.31 10.61
RNA_aptamer 3CUL 58!C:88!C G:A WC [cWW][VIII] 12.68 59.12; 47.3 11.82 -4.86 0.05 9.4
RNA_aptamer 3CUL 59!C:87!C G:C WC [cWW][XIX] 10.53 46.77; 55.89 9.13 -5.96 0.03 9.79
RNA_aptamer 3CUL 61!C:85!C G:C Wb [---][-] 11.03 43.93; 64.16 20.23 -9.04 0.16 17.75
RNA_aptamer 3CUL 62!C:84!C G:C WC [cWW][XIX] 10.75 49.14; 53.29 4.14 -12.71 0.17 15.42
RNA_aptamer 3CUL 63!C:83!C U:A WC [cWW][XX] 10.59 58.61; 52.8 5.81 -2.44 0.35 9.28
RNA_aptamer 3CUL 64!C:82!C A:U WC [cWW][XX] 10.07 58.07; 58.48 0.41 -8.06 0.09 10.3
RNA_aptamer 3CUL 65!C:81!C C:G WC [cWW][XIX] 10.94 55.22; 58.66 3.44 -7.07 0.05 12.58
RNA_aptamer 3CUL 66!C:80!C G:C WC [cWW][XIX] 10.43 57.71; 61.75 4.04 -9.3 0.09 13.18
RNA_aptamer 3CUL 67!C:79!C A:U WC [cWW][XX] 10.58 53.69; 52.72 0.97 -5.0 0.16 12.8
RNA_aptamer 3CUL 68!C:78!C G:C WC [cWW][XIX] 10.08 56.3; 64.2 7.9 -6.72 0.3 14.67
RNA_aptamer 3CUL 69!C:77!C G:C WC [cWW][XIX] 10.77 53.63; 52.41 1.22 -10.22 0.07 19.49
RNA_aptamer 3CUL 70!C:76!C U:U Wb [cWW][XVI] 8.86 77.08; 41.58 35.51 -5.92 0.13 12.19
RNA_aptamer 3CUL 71!C:73!C U:G S(sb:O2*-N7)_1 [---][-] 6.56 78.94; 37.72 41.22 -165.64 0.87 36.15
RNA_aptamer 3CUL 101!D:119!D G:C WC [cWW][XIX] 11.46 57.92; 46.7 11.23 6.89 0.65 4.83
RNA_aptamer 3CUL 102!D:117!D G:U Wb [cWW][XXVIII] 10.51 46.7; 65.63 18.94 -5.07 0.06 7.76
RNA_aptamer 3CUL 103!D:116!D A:U WC [cWW][XX] 10.66 59.66; 53.98 5.68 -10.45 0.28 18.67
RNA_aptamer 3CUL 104!D:115!D U:A WC [cWW][XX] 10.62 55.46; 55.52 0.06 -10.91 0.04 18.14
RNA_aptamer 3CUL 105!D:114!D G:C WC [cWW][XIX] 10.7 53.23; 54.44 1.21 -2.17 0.02 10.09
RNA_aptamer 3CUL 106!D:113!D G:C WC [cWW][XIX] 10.7 54.72; 53.0 1.72 1.02 0.1 8.91
RNA_aptamer 3CUL 107!D:112!D C:G WC [cWW][XIX] 10.38 60.19; 55.95 4.24 1.17 0.13 6.14
RNA_aptamer 3CUL 108!D:111!D G:A S [tSH][XI] 9.06 99.67; 14.6 85.07 -81.34 0.03 23.44
RNA_aptamer 3CUL 108!D:110!D G:A S(sb:O2*-N7) [---][-] 7.32 91.85; 29.53 62.32 -166.34 1.86 26.99
RNA_aptamer 3CUL 120!D:151!D C:G WC [cWW][XIX] 11.03 53.39; 56.11 2.72 -7.83 0.05 9.37
RNA_aptamer 3CUL 121!D:154!D G:A rS [tSS][-] 8.28 91.72; 52.04 39.68 142.45 0.64 60.38
RNA_aptamer 3CUL 121!D:150!D G:C WC [cWW][XIX] 10.54 61.03; 60.16 0.86 -10.55 0.22 11.71
RNA_aptamer 3CUL 122!D:149!D C:G WC [cWW][XIX] 10.85 50.52; 51.62 1.1 -8.47 0.32 18.91
RNA_aptamer 3CUL 123!D:192!D A:A rS(sb:O2*-N1)_1 [tSS][-] 8.92 85.46; 53.23 32.23 163.59 0.51 38.31
RNA_aptamer 3CUL 123!D:148!D A:G WC [cWW][VIII] 13.41 42.19; 41.34 0.85 7.98 0.41 12.18
RNA_aptamer 3CUL 125!D:144!D G:U Wb [cWW][XXVIII] 10.94 38.24; 69.87 31.63 5.13 0.2 2.4
RNA_aptamer 3CUL 126!D:143!D C:G WC [cWW][XIX] 11.22 49.81; 46.74 3.07 -3.54 0.29 22.8
RNA_aptamer 3CUL 127!D:142!D C:G WC [cWW][XIX] 10.44 67.37; 53.02 14.35 8.27 0.16 8.39
RNA_aptamer 3CUL 128!D:141!D C:G WC [cWW][XIX] 10.09 63.25; 54.61 8.65 2.12 0.19 10.26
RNA_aptamer 3CUL 129!D:140!D C:G WC [cWW][XIX] 10.6 58.69; 48.06 10.63 4.58 0.45 12.4
RNA_aptamer 3CUL 150!D:154!D C:A rpS(bs:O2-O2*) [cSS][-] 5.52 111.28; 140.91 29.62 -33.91 0.2 49.99
RNA_aptamer 3CUL 155!D:191!D G:C WC [cWW][XIX] 10.99 54.01; 57.66 3.65 5.65 0.07 5.7
RNA_aptamer 3CUL 156!D:190!D G:C WC [cWW][XIX] 10.73 61.22; 48.96 12.26 2.97 0.53 16.75
RNA_aptamer 3CUL 157!D:189!D U:G Wb [cWW][XXVIII] 10.88 66.17; 46.75 19.43 -6.1 0.5 19.59
RNA_aptamer 3CUL 158!D:188!D G:A Wb [---][-] 12.07 79.41; 53.78 25.63 -3.16 0.13 6.55
RNA_aptamer 3CUL 159!D:187!D G:C WC [cWW][XIX] 10.83 53.03; 54.21 1.18 -10.14 0.31 16.38
RNA_aptamer 3CUL 160!D:186!D U:G WC_mo [---][-] 11.05 60.98; 50.77 10.21 -5.57 0.29 10.63
RNA_aptamer 3CUL 161!D:185!D G:C WC [cWW][XIX] 10.92 55.5; 50.42 5.08 -6.17 0.18 14.29
RNA_aptamer 3CUL 162!D:184!D G:C WC [cWW][XIX] 10.25 56.9; 55.88 1.02 -15.16 0.44 24.69
RNA_aptamer 3CUL 163!D:183!D U:A WC [cWW][XX] 10.48 56.98; 61.17 4.19 -6.9 0.11 12.61
RNA_aptamer 3CUL 164!D:182!D* A:U WC [cWW][XX]; Wb* [---][-] 10.7 61.6; 50.12 11.48 -7.78 0.07 10.92
RNA_aptamer 3CUL 165!D:181!D C:G WC [cWW][XIX] 10.77 53.65; 61.3 7.66 -5.6 0.19 11.94
RNA_aptamer 3CUL 166!D:180!D G:C WC [cWW][XIX] 10.91 53.52; 54.22 0.7 -1.7 0.01 5.24
RNA_aptamer 3CUL 167!D:179!D A:U WC [cWW][XX] 10.51 55.43; 57.6 2.16 -4.54 0.06 9.03
RNA_aptamer 3CUL 168!D:178!D G:C WC [cWW][XIX] 10.7 54.68; 52.01 2.67 -3.31 0.21 6.16
RNA_aptamer 3CUL 169!D:177!D G:C WC [cWW][XIX] 10.47 55.21; 54.93 0.28 -3.02 0.14 24.66
RNA_aptamer 3CUL 170!D:176!D U:U Wb [cWW][XVI] 9.2 74.18; 41.64 32.54 -10.74 0.21 9.35
RNA_aptamer 3CUL 171!D:173!D U:G S(sb:O2*-N7)_1 [---][-] 6.28 84.18; 42.84 41.34 -169.16 1.0 33.98