Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3CUN BPC Identified: 72 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 3CUN 1!C:19!C G:C Wb [---][-] 10.36 45.42; 61.92 16.5 16.67 2.44 11.44
RNA_aptamer 3CUN 2!C:17!C G:U Wb [cWW][XXVIII] 10.45 39.62; 70.0 30.38 -9.99 0.27 12.17
RNA_aptamer 3CUN 3!C:16!C A:U WC [cWW][XX] 10.69 58.4; 55.14 3.26 -17.59 0.19 23.66
RNA_aptamer 3CUN 4!C:15!C U:A WC [cWW][XX] 10.24 56.36; 60.89 4.53 -9.34 0.02 14.77
RNA_aptamer 3CUN 5!C:14!C G:C WC [cWW][XIX] 10.41 59.0; 53.01 5.99 0.95 0.31 9.98
RNA_aptamer 3CUN 6!C:13!C G:C WC [cWW][XIX] 10.64 54.76; 57.49 2.73 -7.87 0.28 11.92
RNA_aptamer 3CUN 7!C:12!C C:G WC [cWW][XIX] 10.91 59.41; 51.88 7.53 6.95 0.16 9.47
RNA_aptamer 3CUN 8!C:11!C G:A S [tSH][XI] 8.77 106.31; 11.12 95.19 -77.54 0.96 32.33
RNA_aptamer 3CUN 20!C:51!C C:G WC [cWW][XIX] 10.81 53.57; 59.42 5.85 -3.03 0.07 13.54
RNA_aptamer 3CUN 21!C:54!C G:A rS [tSS][-] 8.5 87.68; 54.8 32.88 148.31 0.78 43.54
RNA_aptamer 3CUN 21!C:50!C G:C WC [cWW][XIX] 10.65 55.62; 55.79 0.17 -16.91 0.52 40.03
RNA_aptamer 3CUN 22!C:49!C C:G WC [cWW][XIX] 10.74 51.08; 51.31 0.23 -9.65 0.43 22.81
RNA_aptamer 3CUN 23!C:92!C A:A fS(sb:O2*-N1)_1 [---][-] 8.76 87.71; 57.71 30.0 159.18 2.52 55.22
RNA_aptamer 3CUN 23!C:48!C A:G WC [cWW][VIII] 12.73 45.34; 43.18 2.16 2.89 0.19 6.04
RNA_aptamer 3CUN 25!C:44!C G:U Wb [cWW][XXVIII] 10.48 39.61; 64.76 25.15 -1.34 0.36 5.05
RNA_aptamer 3CUN 26!C:43!C C:G WC [cWW][XIX] 10.18 57.54; 50.75 6.78 -11.72 0.43 20.36
RNA_aptamer 3CUN 27!C:42!C C:G WC [cWW][XIX] 10.81 52.12; 54.09 1.97 -6.88 0.49 12.9
RNA_aptamer 3CUN 28!C:41!C C:G WC [cWW][XIX] 10.4 52.91; 55.09 2.17 -5.15 0.07 10.56
RNA_aptamer 3CUN 29!C:40!C C:G WC [cWW][XIX] 10.68 52.34; 51.4 0.94 -3.18 0.31 11.86
RNA_aptamer 3CUN 49!C:55!C G:G rS(ss:O2*-O2*)_2 [---][-] 5.01 100.6; 174.81 74.21 -142.88 2.68 52.73
RNA_aptamer 3CUN 55!C:91!C G:C WC [cWW][XIX] 10.63 56.6; 58.07 1.47 0.9 0.13 3.64
RNA_aptamer 3CUN 56!C:90!C G:C WC [cWW][XIX] 10.25 57.19; 60.38 3.2 -13.84 0.32 19.35
RNA_aptamer 3CUN 57!C:89!C U:G WC [---][-] 11.49 46.17; 48.96 2.78 -7.8 0.26 11.2
RNA_aptamer 3CUN 58!C:88!C G:A WC [cWW][VIII] 12.5 54.99; 47.51 7.47 -2.32 0.06 7.1
RNA_aptamer 3CUN 59!C:87!C G:C WC [cWW][XIX] 10.71 51.74; 50.96 0.77 -8.34 0.15 10.57
RNA_aptamer 3CUN 61!C:85!C G:C Wb [---][-] 11.26 45.02; 57.18 12.16 -0.12 0.3 9.86
RNA_aptamer 3CUN 62!C:84!C G:C Wb [---][-] 10.54 43.97; 61.59 17.62 -15.42 0.63 15.18
RNA_aptamer 3CUN 63!C:83!C U:A WC [cWW][XX] 10.23 62.88; 53.84 9.04 0.97 0.47 13.14
RNA_aptamer 3CUN 64!C:82!C A:U WC [cWW][XX] 10.02 56.05; 61.66 5.61 -7.89 0.32 16.54
RNA_aptamer 3CUN 65!C:81!C C:G WC [cWW][XIX] 11.01 54.99; 55.59 0.59 -8.79 0.16 11.06
RNA_aptamer 3CUN 66!C:80!C G:C WC_Mo [cWW][XIX] 10.23 62.09; 65.25 3.16 -7.04 0.02 12.8
RNA_aptamer 3CUN 67!C:79!C A:U WC [cWW][XX] 10.67 52.74; 57.01 4.27 -4.87 0.15 9.79
RNA_aptamer 3CUN 68!C:78!C G:C WC [cWW][XIX] 10.05 58.17; 63.93 5.76 -8.4 0.2 13.86
RNA_aptamer 3CUN 69!C:77!C G:C WC [cWW][XIX] 10.85 53.74; 53.74 0.0 -12.43 0.09 19.56
RNA_aptamer 3CUN 70!C:76!C U:U Wb [cWW][XVI] 9.28 73.95; 38.35 35.59 -4.86 0.33 4.68
RNA_aptamer 3CUN 71!C:73!C U:G S(sb:O2*-N7)_1 [---][-] 6.54 85.29; 44.54 40.75 -170.21 1.95 31.01
RNA_aptamer 3CUN 101!D:119!D G:C WC [cWW][XIX] 11.19 58.62; 50.77 7.85 6.97 1.69 10.18
RNA_aptamer 3CUN 102!D:117!D G:U Wb [cWW][XXVIII] 10.75 47.94; 59.64 11.7 -0.17 0.37 6.77
RNA_aptamer 3CUN 103!D:116!D A:U WC [cWW][XX] 10.64 60.45; 54.06 6.38 -15.47 0.18 22.73
RNA_aptamer 3CUN 104!D:115!D U:A WC [cWW][XX] 10.58 57.33; 53.88 3.46 -14.95 0.22 19.84
RNA_aptamer 3CUN 105!D:114!D G:C WC [cWW][XIX] 10.39 48.13; 58.07 9.95 -5.02 0.03 11.4
RNA_aptamer 3CUN 106!D:113!D G:C WC [cWW][XIX] 11.06 57.79; 47.87 9.91 0.66 0.06 2.51
RNA_aptamer 3CUN 107!D:112!D C:G WC [cWW][XIX] 10.87 55.19; 56.83 1.64 3.26 0.11 5.83
RNA_aptamer 3CUN 108!D:111!D G:A S [tSH][XI] 9.05 99.47; 13.33 86.13 -88.84 0.16 22.79
RNA_aptamer 3CUN 108!D:110!D G:A S(sb:O2*-N7) [---][-] 7.26 88.41; 32.64 55.77 -170.09 2.54 28.64
RNA_aptamer 3CUN 120!D:151!D C:G WC [cWW][XIX] 10.83 53.05; 57.04 3.99 6.33 0.44 14.5
RNA_aptamer 3CUN 121!D:154!D G:A rS [tSS][-] 8.42 89.02; 54.89 34.13 142.66 0.4 54.23
RNA_aptamer 3CUN 121!D:150!D G:C WC_Mo [cWW][XIX] 10.8 60.93; 71.09 10.16 -0.84 0.0 11.35
RNA_aptamer 3CUN 122!D:149!D C:G WC [cWW][XIX] 11.51 46.66; 51.29 4.63 -9.2 0.13 16.56
RNA_aptamer 3CUN 123!D:192!D A:A rS(sb:O2*-N1)_1 [tSS][-] 8.81 82.26; 54.44 27.82 168.15 1.16 33.97
RNA_aptamer 3CUN 123!D:148!D A:G WC [cWW][VIII] 13.47 43.78; 47.91 4.14 13.96 0.1 26.44
RNA_aptamer 3CUN 125!D:144!D G:U sWb [---][-] 10.24 35.97; 82.26 46.29 1.66 0.08 5.27
RNA_aptamer 3CUN 126!D:143!D C:G WC [cWW][XIX] 11.28 44.31; 57.18 12.87 1.09 0.04 22.58
RNA_aptamer 3CUN 127!D:142!D C:G WC [cWW][XIX] 10.41 61.98; 55.23 6.75 12.75 0.06 13.02
RNA_aptamer 3CUN 128!D:141!D C:G WC [cWW][XIX] 10.2 63.53; 56.08 7.46 1.8 0.14 8.74
RNA_aptamer 3CUN 129!D:140!D C:G Wb [---][-] 10.18 69.92; 49.32 20.6 -1.89 0.27 7.91
RNA_aptamer 3CUN 150!D:154!D C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.29 119.88; 146.34 26.46 -28.72 1.14 55.5
RNA_aptamer 3CUN 155!D:191!D G:C WC_Mo [cWW][XIX] 10.56 52.53; 67.94 15.41 3.46 0.44 18.66
RNA_aptamer 3CUN 156!D:190!D G:C WC [cWW][XIX] 11.55 56.31; 47.56 8.75 21.18 0.45 18.51
RNA_aptamer 3CUN 158!D:188!D G:A Wb [---][-] 11.96 81.48; 49.27 32.21 -8.83 0.64 14.59
RNA_aptamer 3CUN 159!D:187!D G:C Wb [---][-] 10.8 47.81; 61.75 13.94 -14.08 0.0 23.11
RNA_aptamer 3CUN 161!D:185!D G:C WC [cWW][XIX] 10.17 52.3; 61.81 9.5 -15.13 0.56 15.85
RNA_aptamer 3CUN 162!D:184!D G:C WC [cWW][XIX] 10.45 53.55; 53.93 0.38 -12.8 0.24 17.1
RNA_aptamer 3CUN 163!D:183!D U:A WC [cWW][XX] 10.88 51.38; 56.45 5.07 -1.84 0.13 15.08
RNA_aptamer 3CUN 164!D:182!D* A:U WC [cWW][XX]; Wb* [---][-] 10.83 59.49; 47.5 11.99 -8.34 0.0 14.58
RNA_aptamer 3CUN 165!D:181!D C:G WC [cWW][XIX] 10.51 54.8; 55.78 0.98 -6.64 0.27 8.68
RNA_aptamer 3CUN 166!D:180!D G:C WC [cWW][XIX] 11.04 52.44; 56.16 3.72 6.46 0.2 17.39
RNA_aptamer 3CUN 167!D:179!D A:U WC [cWW][XX] 10.49 56.11; 57.09 0.98 -1.54 0.26 12.78
RNA_aptamer 3CUN 168!D:178!D G:C WC [cWW][XIX] 10.39 50.93; 57.27 6.34 -6.08 0.02 8.42
RNA_aptamer 3CUN 169!D:177!D G:C WC [cWW][XIX] 10.51 54.14; 55.4 1.25 -3.85 0.06 30.24
RNA_aptamer 3CUN 170!D:176!D U:U Wb [cWW][XVI] 9.25 75.28; 38.42 36.86 -5.03 0.12 7.86
RNA_aptamer 3CUN 171!D:173!D U:G S(sb:O2*-N7)_1 [---][-] 6.16 82.24; 40.63 41.61 -170.25 0.83 33.77