Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3D0U BPC Identified: 80 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3D0U 5!A:156!A G:C WC [cWW][XIX] 10.62 54.29; 55.03 0.74 -13.34 0.13 18.12
Riboswitch 3D0U 6!A:155!A G:C WC [cWW][XIX] 10.57 54.61; 52.85 1.76 -13.48 0.74 27.27
Riboswitch 3D0U 7!A:154!A A:G WC [cWW][VIII] 12.74 46.64; 48.67 2.03 -9.55 0.55 19.52
Riboswitch 3D0U 8!A:152!A G:G rH_1 [tWH][VII] 11.36 31.16; 29.18 1.98 -173.79 0.19 4.58
Riboswitch 3D0U 9!A:76!A G:C WC [cWW][XIX] 10.79 48.49; 49.6 1.12 17.96 0.36 15.67
Riboswitch 3D0U 11!A:78!A G:A rS [tSS][-] 8.31 87.0; 59.9 27.1 160.39 0.51 26.91
Riboswitch 3D0U 11!A:75!A G:C WC [cWW][XIX] 10.62 53.21; 53.36 0.14 -6.74 0.02 9.64
Riboswitch 3D0U 12!A:74!A C:G WC [cWW][XIX] 10.58 55.15; 54.39 0.76 -6.81 0.15 9.89
Riboswitch 3D0U 13!A:73!A G:C WC [cWW][XIX] 10.53 53.61; 55.88 2.28 -3.59 0.0 6.7
Riboswitch 3D0U 14!A:72!A C:G WC [cWW][XIX] 10.64 53.77; 54.76 1.0 -5.07 0.18 11.74
Riboswitch 3D0U 15!A:71!A C:G WC [cWW][XIX] 10.87 49.99; 53.86 3.88 -1.92 0.02 5.53
Riboswitch 3D0U 16!A:70!A C:G WC [cWW][XIX] 10.57 58.58; 53.07 5.51 -0.38 0.06 4.26
Riboswitch 3D0U 17!A:69!A G:A S [tSH][XI] 9.52 99.92; 8.69 91.23 -17.59 0.16 2.29
Riboswitch 3D0U 18!A:68!A A:G S [tSH][XI] 9.49 1.69; 95.93 94.25 3.02 0.75 17.48
Riboswitch 3D0U 19!A:67!A G:C WC [cWW][XIX] 10.55 52.33; 57.0 4.67 -4.31 0.27 9.73
Riboswitch 3D0U 20!A:66!A A:G WC [cWW][VIII] 12.71 46.86; 43.59 3.27 -5.3 0.23 17.31
Riboswitch 3D0U 22!A:64!A G:A S [tSH][XI] 9.48 95.42; 3.48 91.94 45.57 0.35 13.68
Riboswitch 3D0U 23!A:63!A A:A rS* [tHH][-] 11.37 11.17; 13.39 2.22 -137.91 0.26 10.8
Riboswitch 3D0U 24!A:62!A G:A S(bp:N1-O2P)_3 [---][-] 10.9 81.8; 59.22 22.59 -167.02 0.6 9.36
Riboswitch 3D0U 24!A:25!A G:U pS* [cHS][-] 6.78 142.31; 52.42 89.9 7.1 0.4 9.24
Riboswitch 3D0U 25!A:62!A U:A rH_1 [tWH][XXIV] 9.62 28.89; 22.17 6.72 -160.04 0.26 12.31
Riboswitch 3D0U 26!A:61!A A:G S [tSH][XI] 9.37 6.21; 97.81 91.6 21.69 0.11 8.24
Riboswitch 3D0U 27!A:60!A G:U Wb [cWW][XXVIII] 10.49 40.96; 68.89 27.93 -6.05 0.21 17.63
Riboswitch 3D0U 28!A:59!A G:C WC [cWW][XIX] 10.63 51.28; 55.37 4.09 -5.49 0.25 9.64
Riboswitch 3D0U 29!A:58!A C:G WC [cWW][XIX] 10.48 56.6; 54.46 2.13 -8.9 0.01 13.07
Riboswitch 3D0U 30!A:57!A U:G Wb [cWW][XXVIII] 10.36 70.26; 43.25 27.01 -4.99 0.11 7.81
Riboswitch 3D0U 31!A:56!A G:C WC [cWW][XIX] 10.45 57.43; 57.07 0.36 -8.97 0.06 19.41
Riboswitch 3D0U 32!A:55!A U:A WC [cWW][XX] 10.37 54.64; 57.63 2.99 -9.19 0.09 9.52
Riboswitch 3D0U 33!A:54!A C:G WC [cWW][XIX] 10.6 55.05; 55.12 0.07 -2.89 0.14 8.64
Riboswitch 3D0U 34!A:53!A C:G WC [cWW][XIX] 10.55 55.86; 53.46 2.39 -5.39 0.2 8.16
Riboswitch 3D0U 35!A:52!A C:G WC [cWW][XIX] 10.7 56.69; 52.96 3.72 -1.03 0.0 2.78
Riboswitch 3D0U 36!A:38!A A:C pS* [cHS][-] 7.26 132.99; 39.68 93.31 37.69 0.53 30.38
Riboswitch 3D0U 37!A:49!A U:U rWb [tWW][XIII] 8.43 45.79; 42.67 3.12 159.67 1.18 32.8
Riboswitch 3D0U 38!A:51!A C:G WC [cWW][XIX] 10.83 47.78; 53.15 5.37 -5.92 0.3 14.37
Riboswitch 3D0U 39!A:47!A A:A rH [tWH][V] 12.19 25.67; 22.66 3.01 130.64 1.37 27.59
Riboswitch 3D0U 40!A:44!A G:A rH_2v [---][-] 13.66 22.3; 12.33 9.96 -35.76 1.01 80.1
Riboswitch 3D0U 41!A:97!A G:C WC [cWW][XIX] 10.56 53.97; 56.11 2.13 -9.69 0.12 14.92
Riboswitch 3D0U 42!A:96!A G:C WC [cWW][XIX] 10.98 50.45; 49.04 1.41 -5.13 0.02 6.71
Riboswitch 3D0U 43!A:95!A G:C WC [cWW][XIX] 10.56 55.07; 52.68 2.38 2.1 0.33 8.13
Riboswitch 3D0U 44!A:94!A A:U WC [cWW][XX] 10.4 57.51; 56.32 1.19 -0.48 0.2 5.9
Riboswitch 3D0U 45!A:93!A G:C WC [cWW][XIX] 10.57 55.96; 58.83 2.87 -9.02 0.64 23.16
Riboswitch 3D0U 46!A:92!A G:C WC [cWW][XIX] 10.77 56.38; 52.41 3.97 -8.39 0.77 20.82
Riboswitch 3D0U 66!A:126!A G:A rS(sb:O2*-N1)_2 [---][-] 9.2 100.35; 46.14 54.21 -149.41 1.05 38.07
Riboswitch 3D0U 66!A:124!A G:A fS [tSW][X] 10.09 106.81; 12.48 94.33 -103.84 1.12 39.1
Riboswitch 3D0U 75!A:78!A C:A rpS(bs:O2-O2*) [cSS][-] 5.93 103.99; 147.31 43.32 -45.45 0.62 17.45
Riboswitch 3D0U 79!A:110!A A:U WC [cWW][XX] 10.39 53.78; 56.67 2.89 3.45 0.12 7.59
Riboswitch 3D0U 80!A:109!A G:C WC [cWW][XIX] 10.53 55.78; 56.63 0.85 -2.73 0.01 7.39
Riboswitch 3D0U 81!A:108!A C:G WC [cWW][XIX] 10.31 48.24; 62.55 14.31 6.05 0.03 11.27
Riboswitch 3D0U 82!A:106!A G:U Wb [cWW][XXVIII] 10.52 37.9; 65.64 27.74 -6.61 0.18 6.29
Riboswitch 3D0U 83!A:105!A A:U Wb* [---][-] 10.32 64.32; 49.78 14.54 -11.79 0.15 14.18
Riboswitch 3D0U 84!A:104!A G:C WC [cWW][XIX] 10.51 54.52; 56.13 1.6 -8.08 0.07 10.76
Riboswitch 3D0U 85!A:103!A C:G WC [cWW][XIX] 10.62 56.77; 54.31 2.45 -5.87 0.05 10.1
Riboswitch 3D0U 86!A:102!A A:U WC [cWW][XX] 10.16 58.65; 58.06 0.59 -6.7 0.0 9.72
Riboswitch 3D0U 87!A:101!A G:C WC [cWW][XIX] 10.65 51.81; 53.73 1.92 -4.59 0.03 6.43
Riboswitch 3D0U 88!A:100!A A:U WC [cWW][XX] 10.42 56.07; 53.83 2.24 -7.41 0.03 10.92
Riboswitch 3D0U 89!A:99!A G:C WC [cWW][XIX] 10.48 53.67; 53.82 0.15 -6.02 0.24 20.11
Riboswitch 3D0U 90!A:98!A U:G Wb [cWW][XXVIII] 10.5 66.58; 37.37 29.21 -2.46 0.1 10.37
Riboswitch 3D0U 91!A:95!A U:C rH_2 [---][-] 13.16 15.38; 16.65 1.27 -65.35 0.24 66.62
Riboswitch 3D0U 111!A:137!A G:U Wb [cWW][XXVIII] 10.48 41.97; 64.81 22.85 -5.57 0.1 5.82
Riboswitch 3D0U 112!A:136!A G:C WC [cWW][XIX] 10.8 52.98; 56.05 3.07 -11.3 0.09 16.87
Riboswitch 3D0U 113!A:135!A G:A WC [cWW][VIII] 12.66 48.88; 48.08 0.8 -4.12 0.52 11.95
Riboswitch 3D0U 114!A:134!A G:C WC [cWW][XIX] 10.89 49.9; 49.99 0.09 -13.01 0.15 13.58
Riboswitch 3D0U 115!A:133!A G:C WC [cWW][XIX] 10.57 56.31; 55.46 0.85 -11.97 0.14 20.8
Riboswitch 3D0U 116!A:132!A U:A WC [cWW][XX] 10.36 57.76; 57.82 0.06 -11.73 0.23 17.74
Riboswitch 3D0U 117!A:131!A G:U Wb [cWW][XXVIII] 10.39 44.64; 67.07 22.43 -8.59 0.1 9.74
Riboswitch 3D0U 118!A:130!A A:U WC [cWW][XX] 10.68 55.22; 52.14 3.08 -7.44 0.04 10.09
Riboswitch 3D0U 119!A:129!A G:C WC [cWW][XIX] 10.52 55.78; 54.67 1.11 -6.93 0.01 12.2
Riboswitch 3D0U 120!A:128!A G:C WC [cWW][XIX] 10.52 51.73; 57.85 6.12 -4.96 0.56 19.09
Riboswitch 3D0U 121!A:127!A G:C WC [cWW][XIX] 10.7 56.04; 53.95 2.09 -2.55 0.3 9.79
Riboswitch 3D0U 122!A:126!A G:A S [tSH][XI] 9.65 96.22; 6.66 89.56 -55.04 0.19 13.15
Riboswitch 3D0U 122!A:124!A G:A S(sb:O2*-N7) [---][-] 7.1 78.7; 35.52 43.18 -175.48 2.09 23.01
Riboswitch 3D0U 138!A:152!A G:G S_1 [tSH][-] 11.31 84.41; 6.36 78.05 -5.98 0.01 6.22
Riboswitch 3D0U 138!A:151!A G:A WC [cWW][VIII] 12.23 53.24; 54.46 1.21 -5.55 1.02 19.51
Riboswitch 3D0U 139!A:155!A U:C rS(ss:O2*-O2*) [---][-] 5.26 166.78; 141.32 25.46 -127.03 1.15 32.96
Riboswitch 3D0U 139!A:150!A U:G Wb [cWW][XXVIII] 10.36 70.59; 43.21 27.37 -13.48 0.25 13.78
Riboswitch 3D0U 140!A:149!A C:G WC [cWW][XIX] 10.57 54.41; 55.48 1.07 -13.22 0.1 21.28
Riboswitch 3D0U 141!A:148!A G:C WC [cWW][XIX] 10.63 54.05; 54.43 0.37 -7.47 0.12 12.86
Riboswitch 3D0U 142!A:147!A C:G WC [cWW][XIX] 10.66 54.32; 53.51 0.82 -1.3 0.08 3.43
Riboswitch 3D0U 143!A:146!A G:A S [tSH][XI] 9.7 96.65; 8.54 88.11 -108.65 0.63 6.57
Riboswitch 3D0U 143!A:145!A G:A S(sb:O2*-N7) [---][-] 7.54 91.47; 33.31 58.16 170.8 2.39 17.31