Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3D0X BPC Identified: 85 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Ribowitch 3D0X 1!A:160!A G:C WC [cWW][XIX] 10.69 51.36; 57.97 6.61 0.89 0.0 1.91
Ribowitch 3D0X 2!A:159!A G:C WC [cWW][XIX] 10.69 56.6; 50.36 6.24 -7.88 0.09 15.25
Ribowitch 3D0X 3!A:158!A A:U WC [cWW][XX] 10.5 53.93; 51.67 2.25 -8.08 0.13 9.07
Ribowitch 3D0X 4!A:157!A C:G WC [cWW][XIX] 10.59 56.58; 55.63 0.95 -8.58 0.18 9.49
Ribowitch 3D0X 5!A:156!A G:C WC [cWW][XIX] 10.67 60.0; 52.38 7.62 -6.94 0.09 9.59
Ribowitch 3D0X 6!A:155!A G:C WC [cWW][XIX] 10.4 52.61; 52.02 0.59 -15.22 0.38 24.24
Ribowitch 3D0X 7!A:154!A A:G WC [cWW][VIII] 12.63 45.52; 48.63 3.11 -9.43 0.49 19.49
Ribowitch 3D0X 8!A:152!A G:G rH_1 [tWH][VII] 12.24 20.06; 28.5 8.44 161.09 0.43 9.93
Ribowitch 3D0X 9!A:76!A G:C WC [cWW][XIX] 10.7 53.23; 50.79 2.44 14.15 0.25 12.1
Ribowitch 3D0X 11!A:78!A G!A rS [tSS][-] 8.01 87.36; 62.27 25.09 163.11 0.31 22.37
Ribowitch 3D0X 11!A:75!A G:C WC [cWW][XIX] 10.59 53.11; 51.47 1.65 -8.14 0.18 8.8
Ribowitch 3D0X 12!A:74!A C:G WC [cWW][XIX] 10.63 52.14; 54.61 2.46 -7.03 0.06 9.35
Ribowitch 3D0X 13!A:73!A G:C WC [cWW][XIX] 10.66 54.17; 53.17 1.0 -3.91 0.11 7.91
Ribowitch 3D0X 14!A:72!A C:G WC [cWW][XIX] 10.5 55.17; 55.41 0.24 -2.43 0.06 13.6
Ribowitch 3D0X 15!A:71!A C:G WC [cWW][XIX] 10.75 52.49; 56.04 3.55 -4.12 0.08 9.7
Ribowitch 3D0X 16!A:70!A C:G WC [cWW][XIX] 10.57 54.68; 53.89 0.79 -1.16 0.09 3.89
Ribowitch 3D0X 17!A:69!A G!A S [tSH][XI] 9.53 102.73; 10.93 91.8 -9.17 0.09 4.54
Ribowitch 3D0X 18!A:68!A A:G S [tSH][XI] 9.55 4.18; 96.38 92.2 -22.21 0.71 13.99
Ribowitch 3D0X 19!A:67!A G:C WC [cWW][XIX] 10.55 50.8; 55.35 4.55 -6.89 0.18 7.71
Ribowitch 3D0X 20!A:66!A A:G WC [cWW][VIII] 12.74 48.56; 48.27 0.29 -4.91 0.35 18.08
Ribowitch 3D0X 21!A:66!A U:G Wb_Mo [cWW][XXVIII] 9.78 82.23; 58.95 23.29 -18.3 2.13 13.07
Ribowitch 3D0X 22!A:64!A G!A S [tSH][XI] 9.49 97.29; 2.78 94.51 -18.1 0.92 18.93
Ribowitch 3D0X 23!A:63!A A!A rS* [tHH][-] 11.01 10.84; 14.89 4.06 -138.26 0.03 9.67
Ribowitch 3D0X 24!A:62!A G!A S(bp:N2-O2P)_3 [---][-] 10.58 84.52; 62.23 22.3 -164.34 0.63 15.12
Ribowitch 3D0X 24!A:25!A G:U pS* [cHS][-] 6.71 147.22; 49.21 98.01 7.92 0.42 10.35
Ribowitch 3D0X 25!A:62!A U!A rH_1 [tWH][XXIV] 9.64 29.3; 25.01 4.29 -154.93 0.58 20.81
Ribowitch 3D0X 26!A:61!A A:G S [tSH][XI] 9.4 6.49; 101.86 95.37 32.45 0.56 4.13
Ribowitch 3D0X 27!A:60!A G:U Wb [cWW][XXVIII] 10.44 39.04; 69.53 30.49 -3.18 0.3 12.48
Ribowitch 3D0X 28!A:59!A G:C WC [cWW][XIX] 10.73 54.19; 51.15 3.05 -4.42 0.16 14.96
Ribowitch 3D0X 29!A:58!A C:G WC [cWW][XIX] 10.52 53.95; 53.16 0.79 -7.58 0.15 16.29
Ribowitch 3D0X 30!A:57!A U:G Wb [cWW][XXVIII] 10.39 70.29; 41.22 29.08 -1.2 0.09 4.78
Ribowitch 3D0X 31!A:56!A G:C WC [cWW][XIX] 10.37 56.76; 55.9 0.87 -9.51 0.11 23.09
Ribowitch 3D0X 32!A:55!A U!A WC [cWW][XX] 10.54 52.01; 56.02 4.01 -9.72 0.08 11.35
Ribowitch 3D0X 33!A:54!A C:G WC [cWW][XIX] 10.54 55.5; 55.74 0.24 -4.49 0.13 6.55
Ribowitch 3D0X 34!A:53!A C:G WC [cWW][XIX] 10.7 51.41; 56.05 4.63 -7.3 0.09 10.86
Ribowitch 3D0X 35!A:52!A C:G WC [cWW][XIX] 10.67 54.22; 53.4 0.82 -1.04 0.05 3.47
Ribowitch 3D0X 36!A:38!A A:C pS* [cHS][-] 7.19 131.36; 42.61 88.75 49.04 0.87 32.04
Ribowitch 3D0X 37!A:49!A U:U rWb [tWW][XIII] 8.38 41.34; 43.86 2.52 159.55 0.45 30.31
Ribowitch 3D0X 38!A:51!A C:G WC [cWW][XIX] 10.87 44.63; 54.15 9.52 -5.48 0.39 21.12
Ribowitch 3D0X 39!A:47!A A!A rH [tWH][V] 12.05 25.52; 22.93 2.59 125.6 1.48 31.88
Ribowitch 3D0X 40!A:44!A G!A rH_2v [---][-] 13.48 24.7; 13.87 10.83 -35.03 0.39 89.53
Ribowitch 3D0X 41!A:97!A G:C WC [cWW][XIX] 10.46 57.01; 57.06 0.05 -7.97 0.08 13.46
Ribowitch 3D0X 42!A:96!A G:C WC [cWW][XIX] 10.91 52.41; 50.77 1.64 0.05 0.07 6.69
Ribowitch 3D0X 43!A:95!A G:C WC [cWW][XIX] 10.58 54.0; 54.73 0.73 7.6 0.13 9.89
Ribowitch 3D0X 44!A:94!A A:U WC [cWW][XX] 10.62 55.24; 53.79 1.44 -1.62 0.47 10.98
Ribowitch 3D0X 45!A:93!A G:C WC [cWW][XIX] 10.6 57.81; 51.92 5.89 -8.92 0.02 12.59
Ribowitch 3D0X 46!A:92!A G:C WC [cWW][XIX] 10.92 50.8; 49.62 1.19 -14.13 0.19 19.26
Ribowitch 3D0X 66!A:126!A G!A fS(sb:O2*-N1)_1 [---][-] 9.21 105.2; 46.46 58.75 -148.34 0.81 39.17
Ribowitch 3D0X 66!A:124!A G!A fS [tSW][X] 10.18 108.54; 10.19 98.35 -96.21 1.59 45.32
Ribowitch 3D0X 75!A:78!A C!A rpS(bs:O2-O2*) [cSS][-] 6.02 99.16; 151.35 52.18 -51.72 0.42 14.7
Ribowitch 3D0X 79!A:110!A A:U WC [cWW][XX] 10.59 56.54; 53.65 2.89 5.92 0.04 8.18
Ribowitch 3D0X 80!A:109!A G:C WC [cWW][XIX] 10.58 55.4; 59.71 4.31 2.41 0.32 11.09
Ribowitch 3D0X 81!A:108!A C:G WC [cWW][XIX] 10.44 51.85; 62.63 10.78 6.77 0.16 8.14
Ribowitch 3D0X 82!A:106!A G:U Wb [cWW][XXVIII] 10.54 40.09; 68.75 28.66 -4.18 0.17 5.19
Ribowitch 3D0X 83!A:105!A A:U Wb* [---][-] 10.45 68.54; 45.42 23.12 -5.14 0.05 10.11
Ribowitch 3D0X 84!A:104!A G:C WC [cWW][XIX] 10.75 53.51; 56.29 2.78 -7.36 0.03 9.38
Ribowitch 3D0X 85!A:103!A C:G WC [cWW][XIX] 10.57 56.68; 57.89 1.21 -5.58 0.01 7.52
Ribowitch 3D0X 86!A:102!A A:U WC [cWW][XX] 10.15 58.5; 58.41 0.09 -7.88 0.2 13.61
Ribowitch 3D0X 87!A:101!A G:C WC [cWW][XIX] 10.6 54.58; 55.85 1.27 -2.28 0.41 7.52
Ribowitch 3D0X 88!A:100!A A:U WC [cWW][XX] 10.22 58.43; 55.59 2.84 -4.64 0.33 10.84
Ribowitch 3D0X 89!A:99!A G:C WC [cWW][XIX] 10.66 55.1; 48.51 6.59 -6.79 0.32 26.85
Ribowitch 3D0X 90!A:98!A U:G Wb [cWW][XXVIII] 10.68 63.24; 40.26 22.99 -0.05 0.13 7.23
Ribowitch 3D0X 91!A:95!A U:C rH_2 [---][-] 13.24 18.08; 15.23 2.84 -48.46 0.0 80.37
Ribowitch 3D0X 111!A:137!A G:U Wb [cWW][XXVIII] 10.33 47.25; 65.37 18.12 -9.72 0.43 17.24
Ribowitch 3D0X 112!A:136!A G:C WC [cWW][XIX] 10.89 54.78; 55.41 0.63 -7.33 0.23 14.9
Ribowitch 3D0X 113!A:135!A G!A WC [cWW][VIII] 12.68 49.44; 46.35 3.09 2.15 0.44 6.84
Ribowitch 3D0X 114!A:134!A G:C WC [cWW][XIX] 11.05 50.01; 52.94 2.92 -9.33 0.17 10.61
Ribowitch 3D0X 115!A:133!A G:C WC [cWW][XIX] 10.41 54.17; 56.25 2.07 -15.6 0.42 29.85
Ribowitch 3D0X 116!A:132!A U!A WC [cWW][XX] 10.15 63.03; 57.09 5.94 -11.64 0.3 17.9
Ribowitch 3D0X 117!A:131!A G:U WC [---][-] 10.65 57.89; 55.35 2.54 -6.13 0.46 3.78
Ribowitch 3D0X 118!A:130!A A:U Wb* [---][-] 10.5 62.49; 45.49 16.99 -9.4 0.18 12.35
Ribowitch 3D0X 119!A:129!A G:C WC [cWW][XIX] 10.57 56.57; 56.19 0.38 -9.89 0.0 13.08
Ribowitch 3D0X 120!A:128!A G:C WC [cWW][XIX] 10.51 55.35; 60.16 4.81 -7.04 0.06 19.47
Ribowitch 3D0X 121!A:127!A G:C WC [cWW][XIX] 10.57 55.96; 55.88 0.08 -3.76 0.32 8.6
Ribowitch 3D0X 122!A:126!A G!A S [tSH][XI] 9.78 97.9; 10.23 87.67 -52.77 0.72 12.42
Ribowitch 3D0X 122!A:124!A G!A S(sb:O2*-N7) [---][-] 7.02 80.33; 35.21 45.12 -169.01 2.19 29.63
Ribowitch 3D0X 138!A:152!A G:G S_1 [tSH][-] 11.54 79.34; 4.71 74.63 -41.85 0.23 9.34
Ribowitch 3D0X 138!A:151!A G!A WC [cWW][VIII] 12.79 50.09; 42.45 7.63 -7.51 0.5 15.9
Ribowitch 3D0X 139!A:155!A U:C rS(ss:O2*-O2*) [---][-] 5.74 150.93; 141.73 9.2 -116.2 0.43 27.91
Ribowitch 3D0X 139!A:150!A U:G WC [---][-] 10.27 60.71; 48.88 11.83 -12.53 0.01 16.1
Ribowitch 3D0X 140!A:149!A C:G WC [cWW][XIX] 10.34 60.89; 56.59 4.3 -10.45 0.35 18.41
Ribowitch 3D0X 141!A:148!A G:C WC [cWW][XIX] 10.79 56.31; 53.13 3.18 -9.86 0.22 17.65
Ribowitch 3D0X 142!A:147!A C:G WC [cWW][XIX] 10.77 55.89; 56.81 0.92 -4.25 0.04 6.11
Ribowitch 3D0X 143!A:146!A G!A S [tSH][XI] 9.71 92.51; 10.34 82.17 -87.56 0.84 8.39
Ribowitch 3D0X 143!A:145!A G!A S(sb:O2*-N7) [---][-] 7.38 88.38; 31.97 56.41 -177.46 2.28 26.11