Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3D2G BPC Identified: 82 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3D2G 3!A:77!A G:C WC [cWW][XIX] 10.91 48.12; 54.34 6.21 -1.44 0.04 3.36
Riboswitch 3D2G 4!A:76!A A:U WC [cWW][XX] 10.22 61.25; 55.59 5.66 -11.67 0.46 17.63
Riboswitch 3D2G 5!A:75!A C:G WC [cWW][XIX] 10.63 53.49; 57.79 4.3 -9.23 0.09 18.13
Riboswitch 3D2G 6!A:73!A C:G WC [cWW][XIX] 10.48 52.95; 56.36 3.41 -2.13 0.22 5.17
Riboswitch 3D2G 7!A:39!A A:U WC [cWW][XX] 10.64 56.69; 55.47 1.22 -4.18 0.09 7.62
Riboswitch 3D2G 8!A:72!A G:A rpS [cSS][-] 5.69 110.83; 143.73 32.89 -39.73 0.01 15.74
Riboswitch 3D2G 8!A:38!A G:C WC [cWW][XIX] 10.59 57.24; 59.45 2.21 -10.05 0.18 14.54
Riboswitch 3D2G 9!A:44!A G:A rS [tSS][-] 8.46 86.74; 56.94 29.8 -178.22 0.2 23.73
Riboswitch 3D2G 9!A:37!A G:C WC [cWW][XIX] 10.47 53.76; 57.93 4.17 -7.9 0.68 18.66
Riboswitch 3D2G 10!A:36!A G:C WC [cWW][XIX] 10.81 56.65; 52.16 4.5 -9.9 0.0 12.69
Riboswitch 3D2G 11!A:34!A G:G rWb_o [---][-] 13.41 53.14; 1.52 51.62 108.3 0.02 12.97
Riboswitch 3D2G 11!A:30!A G:G rS [tSS][IV] 7.94 80.18; 76.26 3.93 -165.76 0.77 20.4
Riboswitch 3D2G 12!A:33!A U:A H_1 [cWH][XXIII] 7.58 71.8; 57.66 14.14 -0.94 1.21 27.96
Riboswitch 3D2G 13!A:59!A G:U rpS [cSS][-] 6.68 107.6; 118.6 10.99 -46.59 1.1 37.29
Riboswitch 3D2G 13!A:26!A G:C WC [cWW][XIX] 10.66 53.84; 53.13 0.71 -2.06 0.3 14.19
Riboswitch 3D2G 14!A:58!A C:A rpS(sb:O2*-N3) [cSS][-] 5.63 129.65; 101.91 27.74 -79.23 0.03 42.82
Riboswitch 3D2G 14!A:25!A C:G WC [cWW][XIX] 10.89 52.25; 55.19 2.94 -7.97 0.57 18.64
Riboswitch 3D2G 15!A:24!A U:G Wb [cWW][XXVIII] 10.38 68.7; 42.39 26.31 -6.85 0.05 16.05
Riboswitch 3D2G 16!A:23!A U:A WC [cWW][XX] 10.69 51.11; 50.16 0.95 0.03 0.15 10.96
Riboswitch 3D2G 17!A:22!A G:C WC [cWW][XIX] 10.39 53.07; 56.53 3.46 0.2 0.02 7.66
Riboswitch 3D2G 18!A:20!A U:C fS(sb:O2*-N4) [---][-] 8.99 104.22; 24.31 79.91 16.58 1.94 25.11
Riboswitch 3D2G 19!A:21!A U:A H_1 [cWH][XXIII] 8.47 61.32; 51.57 9.75 5.34 0.98 27.42
Riboswitch 3D2G 25!A:57!A G:A fS [tSW][X] 10.65 110.07; 41.76 68.31 94.67 0.23 61.77
Riboswitch 3D2G 27!A:31!A U:A rH_1 [tWH][XXIV] 9.66 34.77; 22.82 11.95 -168.19 0.44 10.01
Riboswitch 3D2G 29!A:36!A A:C rpS(sb:O2*-N3) [cSS][-] 6.08 99.39; 148.44 49.05 -26.19 1.77 25.49
Riboswitch 3D2G 37!A:44!A C:A rpS(bs:O2-O2*) [cSS][-] 5.71 111.18; 150.19 39.01 -6.4 1.83 33.85
Riboswitch 3D2G 38!A:72!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.61 91.88; 56.38 35.5 158.29 1.47 24.21
Riboswitch 3D2G 42!A:72!A G:A S [tSH][XI] 8.91 101.69; 16.66 85.02 78.81 0.16 33.18
Riboswitch 3D2G 43!A:68!A A:A rH [tWH][V] 12.48 20.86; 20.9 0.04 169.13 0.37 10.44
Riboswitch 3D2G 44!A:71!A A:G S [tSH][XI] 9.73 1.91; 94.35 92.44 98.28 1.0 20.96
Riboswitch 3D2G 45!A:70!A C:G WC [cWW][XIX] 10.38 61.19; 54.01 7.18 -12.24 0.7 26.15
Riboswitch 3D2G 46!A:69!A C:G WC [cWW][XIX] 10.48 58.8; 54.28 4.51 -11.47 0.34 21.73
Riboswitch 3D2G 47!A:68!A U:A WC [cWW][XX] 10.77 52.16; 50.2 1.96 -14.98 0.36 18.41
Riboswitch 3D2G 48!A:66!A G:G H_1 [cWH][VI] 11.5 60.79; 30.62 30.17 7.92 0.54 11.09
Riboswitch 3D2G 49!A:65!A A:C rWC_Mo [---][-] 10.59 11.59; 92.42 80.83 144.8 0.58 13.39
Riboswitch 3D2G 51!A:64!A C:G WC [cWW][XIX] 10.81 52.43; 50.97 1.46 -10.61 0.34 18.26
Riboswitch 3D2G 52!A:63!A A:U WC [cWW][XX] 10.16 58.43; 55.25 3.18 -13.76 0.13 19.52
Riboswitch 3D2G 53!A:62!A G:C WC [cWW][XIX] 10.53 50.12; 50.64 0.52 -8.86 0.15 8.6
Riboswitch 3D2G 54!A:61!A G:C WC [cWW][XIX] 10.66 52.82; 56.42 3.6 -5.71 0.02 9.01
Riboswitch 3D2G 56!A:59!A U:U S(bp:N3-O2P) [---][-] 8.51 84.0; 36.18 47.82 -157.14 0.77 17.9
Riboswitch 3D2G 56!A:58!A U:A S(sb:O2*-N7) [---][-] 6.56 84.4; 37.56 46.83 -172.52 0.54 21.16
Riboswitch 3D2G 3!B:77!B G:C Wb* [---][-] 11.76 54.31; 37.67 16.65 3.78 0.06 8.25
Riboswitch 3D2G 4!B:76!B A:U WC [cWW][XX] 10.3 57.17; 59.38 2.21 -5.42 0.26 8.54
Riboswitch 3D2G 5!B:75!B C:G WC [cWW][XIX] 10.55 58.91; 58.98 0.07 -6.19 0.07 13.51
Riboswitch 3D2G 6!B:73!B C:G WC [cWW][XIX] 10.53 48.98; 55.12 6.14 -5.98 0.45 13.94
Riboswitch 3D2G 7!B:39!B A:U WC [cWW][XX] 10.74 55.37; 47.43 7.95 -9.49 0.05 9.76
Riboswitch 3D2G 8!B:72!B G:A rpS [cSS][-] 5.72 108.34; 148.28 39.93 -50.93 0.41 13.17
Riboswitch 3D2G 8!B:38!B G:C WC [cWW][XIX] 10.33 54.89; 58.31 3.42 -9.09 0.33 14.78
Riboswitch 3D2G 9!B:44!B G:A rS [tSS][-] 8.31 87.07; 59.41 27.66 174.36 0.26 14.7
Riboswitch 3D2G 9!B:37!B G:C WC [cWW][XIX] 10.45 53.27; 55.98 2.71 -12.03 0.25 18.12
Riboswitch 3D2G 10!B:36!B G:C WC [cWW][XIX] 10.67 53.93; 52.18 1.75 -10.65 0.6 8.51
Riboswitch 3D2G 11!B:34!B G:G rWb_o [---][-] 13.55 52.57; 4.02 48.55 -8.21 0.02 17.74
Riboswitch 3D2G 11!B:30!B G:G rS [tSS][IV] 8.01 79.77; 76.16 3.61 -167.77 0.78 19.63
Riboswitch 3D2G 12!B:33!B U:A H_1 [cWH][XXIII] 7.79 65.98; 59.97 6.01 -2.24 1.04 30.7
Riboswitch 3D2G 13!B:59!B G:U rpS [cSS][-] 6.63 106.44; 124.01 17.57 -46.62 0.82 34.04
Riboswitch 3D2G 13!B:26!B G:C WC [cWW][XIX] 10.77 54.46; 55.36 0.9 -2.66 0.56 18.82
Riboswitch 3D2G 14!B:58!B C:A rpS(sb:O2*-N3) [cSS][-] 5.58 132.12; 98.27 33.85 -76.39 0.25 44.53
Riboswitch 3D2G 14!B:25!B C:G WC [cWW][XIX] 10.6 54.44; 56.16 1.71 -5.14 0.7 22.1
Riboswitch 3D2G 15!B:24!B U:G Wb [cWW][XXVIII] 10.28 69.36; 42.04 27.32 -7.01 0.18 16.62
Riboswitch 3D2G 16!B:23!B U:A WC [cWW][XX] 10.59 59.39; 54.67 4.72 -6.09 0.09 10.21
Riboswitch 3D2G 17!B:22!B G:C WC [cWW][XIX] 10.71 59.67; 48.51 11.16 2.27 0.24 3.55
Riboswitch 3D2G 18!B:20!B U:C fS(sb:O2*-N4) [---][-] 9.14 95.69; 22.84 72.84 17.94 1.43 31.91
Riboswitch 3D2G 19!B:21!B U:A H_1 [cWH][XXIII] 8.5 59.97; 50.33 9.64 -1.66 0.04 24.1
Riboswitch 3D2G 25!B:57!B G:A fS [tSW][X] 10.14 112.67; 44.74 67.94 96.66 0.01 65.52
Riboswitch 3D2G 27!B:31!B U:A rH_1 [tWH][XXIV] 9.62 34.74; 19.12 15.62 -157.93 0.09 15.57
Riboswitch 3D2G 29!B:36!B A:C rpS(sb:O2*-N3) [cSS][-] 5.81 95.89; 153.76 57.88 -26.4 1.01 20.1
Riboswitch 3D2G 37!B:44!B C:A rpS(bs:O2-O2*) [cSS][-] 5.84 108.21; 152.9 44.69 -9.95 1.53 23.65
Riboswitch 3D2G 38!B:72!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.41 91.83; 64.45 27.39 160.74 1.06 18.38
Riboswitch 3D2G 42!B:72!B G:A S [tSH][XI] 8.99 101.89; 18.04 83.85 59.96 0.08 32.08
Riboswitch 3D2G 43!B:68!B A:A rH [tWH][V] 12.57 22.19; 20.86 1.33 156.32 0.21 8.86
Riboswitch 3D2G 44!B:71!B A:G S [tSH][XI] 9.67 2.5; 93.37 90.87 3.32 1.17 30.22
Riboswitch 3D2G 45!B:70!B C:G WC [cWW][XIX] 10.36 62.64; 53.39 9.25 -14.28 0.51 25.81
Riboswitch 3D2G 46!B:69!B C:G WC [cWW][XIX] 10.36 58.09; 48.55 9.54 -11.87 0.28 16.03
Riboswitch 3D2G 47!B:68!B U:A WC [cWW][XX] 10.55 53.97; 51.27 2.69 -11.44 0.57 20.62
Riboswitch 3D2G 48!B:66!B G:G H_1 [cWH][VI] 11.36 60.6; 28.51 32.09 8.85 0.6 14.03
Riboswitch 3D2G 49!B:65!B A:C rWC_Mo [---][-] 10.79 13.37; 89.38 76.02 134.37 0.71 18.09
Riboswitch 3D2G 51!B:64!B C:G WC [cWW][XIX] 10.73 55.99; 51.53 4.46 -11.5 0.16 15.22
Riboswitch 3D2G 52!B:63!B A:U WC [cWW][XX] 10.59 54.18; 54.28 0.1 -12.95 0.08 14.46
Riboswitch 3D2G 53!B:62!B G:C WC [cWW][XIX] 10.6 57.21; 51.79 5.42 -6.12 0.21 12.16
Riboswitch 3D2G 54!B:61!B G:C WC [cWW][XIX] 10.81 56.8; 50.79 6.01 -5.55 0.2 5.88
Riboswitch 3D2G 56!B:59!B U:U S(bp:N3-O2P) [---][-] 8.57 78.9; 31.5 47.4 -154.5 0.53 15.89
Riboswitch 3D2G 56!B:58!B U:A S(sb:O2*-N7) [---][-] 6.74 77.85; 38.23 39.62 -174.27 1.16 26.42