Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3D2V BPC Identified: 85 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3D2V 3!A:77!A G:C WC [cWW][XIX] 10.66 51.82; 56.22 4.41 -6.63 0.22 7.89
Riboswitch 3D2V 4!A:76!A A:U WC [cWW][XX] 10.36 56.55; 55.15 1.4 -9.0 0.09 15.52
Riboswitch 3D2V 5!A:75!A C:G WC [cWW][XIX] 10.63 56.48; 53.61 2.87 -7.33 0.46 13.81
Riboswitch 3D2V 6!A:73!A C:G WC [cWW][XIX] 10.61 54.06; 54.43 0.38 -3.41 0.15 9.43
Riboswitch 3D2V 7!A:39!A A:U WC [cWW][XX] 10.54 56.36; 55.56 0.8 -0.1 0.16 2.53
Riboswitch 3D2V 8!A:72!A G:A rpS [cSS][-] 5.88 109.36; 145.45 36.09 -36.95 0.2 15.02
Riboswitch 3D2V 8!A:38!A G:C WC [cWW][XIX] 10.52 55.72; 56.73 1.01 -6.74 0.02 12.17
Riboswitch 3D2V 9!A:44!A G:A rS [tSS][-] 8.28 88.57; 55.76 32.81 178.2 0.01 23.01
Riboswitch 3D2V 9!A:37!A G:C WC [cWW][XIX] 10.49 55.23; 55.63 0.4 -8.27 0.79 21.48
Riboswitch 3D2V 10!A:36!A G:C WC [cWW][XIX] 10.85 54.69; 50.81 3.87 -9.06 0.14 14.06
Riboswitch 3D2V 11!A:34!A G:G rWb_o [---][-] 13.5 52.87; 1.13 51.74 67.61 0.18 11.11
Riboswitch 3D2V 11!A:30!A G:G rS [tSS][IV] 8.07 79.41; 75.66 3.75 -166.5 0.62 21.19
Riboswitch 3D2V 12!A:33!A U:A H_1 [cWH][XXIII] 7.83 68.94; 55.29 13.66 3.93 0.91 23.31
Riboswitch 3D2V 13!A:59!A G:U rpS [cSS][-] 6.68 104.05; 121.73 17.68 -42.02 1.04 34.67
Riboswitch 3D2V 13!A:26!A G:C WC [cWW][XIX] 10.74 51.5; 53.24 1.75 -4.15 0.39 15.7
Riboswitch 3D2V 14!A:58!A C:A rpS(sb:O2*-N3) [cSS][-] 5.65 136.47; 94.46 42.01 -82.39 0.24 45.98
Riboswitch 3D2V 14!A:25!A C:G WC [cWW][XIX] 10.44 58.34; 54.73 3.61 -6.65 0.26 18.62
Riboswitch 3D2V 15!A:24!A U:G Wb [cWW][XXVIII] 10.35 68.01; 41.6 26.4 -3.32 0.23 10.21
Riboswitch 3D2V 16!A:23!A U:A WC [cWW][XX] 10.59 55.1; 52.86 2.24 1.6 0.03 2.5
Riboswitch 3D2V 17!A:22!A G:C WC [cWW][XIX] 10.49 54.08; 55.94 1.86 -1.07 0.47 12.54
Riboswitch 3D2V 18!A:20!A U:C fS(sb:O2*-N4) [---][-] 8.98 106.82; 25.0 81.82 19.63 1.87 27.2
Riboswitch 3D2V 19!A:21!A U:A H_1 [cWH][XXIII] 8.35 62.84; 48.05 14.8 0.05 0.6 27.05
Riboswitch 3D2V 25!A:57!A G:A fS [tSW][X] 10.4 111.15; 41.35 69.79 90.73 0.1 68.33
Riboswitch 3D2V 27!A:31!A U:A rH_1 [tWH][XXIV] 9.62 31.75; 20.74 11.0 -169.49 0.07 8.31
Riboswitch 3D2V 28!A:30!A G:G S(sb:O2*-N7)_1 [---][-] 7.0 78.38; 29.82 48.57 -168.54 1.5 30.07
Riboswitch 3D2V 29!A:36!A A:C rpS(sb:O2*-N3) [cSS][-] 5.65 100.52; 149.74 49.22 -26.91 1.59 26.82
Riboswitch 3D2V 35!A:37!A U:C pS [cSH][-] 9.06 104.85; 30.16 74.7 -8.73 0.15 17.09
Riboswitch 3D2V 37!A:44!A C:A rpS(bs:O2-O2*) [cSS][-] 5.79 107.21; 150.56 43.35 -6.25 1.87 30.93
Riboswitch 3D2V 38!A:72!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.5 90.68; 59.17 31.51 158.72 1.39 24.73
Riboswitch 3D2V 42!A:72!A G:A S [tSH][XI] 8.77 102.33; 17.9 84.43 73.34 0.22 35.35
Riboswitch 3D2V 43!A:68!A A:A rH [tWH][V] 12.25 23.82; 19.35 4.47 -177.61 0.09 5.49
Riboswitch 3D2V 44!A:71!A A:G S [tSH][XI] 9.67 1.24; 93.33 92.09 90.08 1.08 23.47
Riboswitch 3D2V 45!A:70!A C:G WC [cWW][XIX] 10.32 57.16; 54.94 2.22 -11.91 0.62 27.48
Riboswitch 3D2V 46!A:69!A C:G WC [cWW][XIX] 10.45 56.17; 55.25 0.92 -12.67 0.06 20.01
Riboswitch 3D2V 47!A:68!A U:A WC [cWW][XX] 10.62 53.93; 52.33 1.6 -13.34 0.58 21.04
Riboswitch 3D2V 48!A:66!A G:G H_1 [cWH][VI] 11.47 60.81; 29.37 31.44 13.36 0.67 14.49
Riboswitch 3D2V 49!A:65!A A:C rWC_Mo [---][-] 10.76 10.12; 85.88 75.76 144.21 0.71 13.88
Riboswitch 3D2V 51!A:64!A C:G WC [cWW][XIX] 10.61 54.77; 53.21 1.56 -8.37 0.58 16.86
Riboswitch 3D2V 52!A:63!A A:U WC [cWW][XX] 10.2 55.34; 58.46 3.11 -13.65 0.1 17.72
Riboswitch 3D2V 53!A:62!A G:C WC [cWW][XIX] 10.72 51.72; 54.42 2.7 -10.61 0.03 14.34
Riboswitch 3D2V 54!A:61!A G:C WC [cWW][XIX] 10.73 54.61; 55.41 0.8 -6.25 0.1 8.06
Riboswitch 3D2V 56!A:59!A U:U S(bp:N3-O2P) [---][-] 8.5 79.27; 32.34 46.93 -162.17 0.8 17.53
Riboswitch 3D2V 56!A:58!A U:A S(sb:O2*-N7) [---][-] 6.6 78.1; 39.88 38.22 -173.69 0.68 26.13
Riboswitch 3D2V 3!B:77!B G:C WC [cWW][XIX] 10.56 49.02; 58.37 9.34 2.66 0.22 8.65
Riboswitch 3D2V 4!B:76!B A:U WC [cWW][XX] 10.31 55.0; 62.67 7.67 0.0 0.24 2.02
Riboswitch 3D2V 5!B:75!B C:G WC [cWW][XIX] 11.03 52.53; 53.75 1.22 -5.5 0.14 11.74
Riboswitch 3D2V 6!B:73!B C:G WC [cWW][XIX] 10.9 47.75; 55.18 7.43 -4.07 0.31 10.15
Riboswitch 3D2V 7!B:39!B A:U WC [cWW][XX] 10.58 54.02; 56.85 2.83 -1.36 0.01 4.11
Riboswitch 3D2V 8!B:72!B G:A rpS [cSS][-] 5.66 109.14; 145.24 36.1 -40.18 0.24 15.63
Riboswitch 3D2V 8!B:38!B G:C WC [cWW][XIX] 10.58 55.1; 58.29 3.19 -8.82 0.08 13.48
Riboswitch 3D2V 9!B:44!B G:A rS [tSS][-] 8.24 88.91; 57.73 31.17 174.63 0.26 16.09
Riboswitch 3D2V 9!B:37!B G:C WC [cWW][XIX] 10.4 54.74; 56.61 1.87 -11.46 0.82 24.36
Riboswitch 3D2V 10!B:45!B G:C rS(ss:O2*-O2*) [---][-] 5.32 167.88; 150.42 17.47 -58.16 2.17 35.52
Riboswitch 3D2V 10!B:36!B G:C WC [cWW][XIX] 10.73 53.2; 54.0 0.81 -11.27 0.12 12.66
Riboswitch 3D2V 11!B:34!B G:G rWb_o [---][-] 13.45 52.79; 1.37 51.42 26.12 0.03 10.74
Riboswitch 3D2V 11!B:30!B G:G rS [tSS][IV] 8.14 79.19; 75.26 3.93 -166.51 0.52 17.83
Riboswitch 3D2V 12!B:33!B U:A H_1 [cWH][XXIII] 7.76 65.52; 59.68 5.84 -0.45 1.17 31.71
Riboswitch 3D2V 13!B:59!B G:U rpS [cSS][-] 6.67 104.4; 120.86 16.45 -41.77 0.94 35.37
Riboswitch 3D2V 13!B:26!B G:C WC [cWW][XIX] 10.78 52.33; 53.9 1.56 -0.56 0.4 15.2
Riboswitch 3D2V 14!B:58!B C:A rpS(sb:O2*-N3) [cSS][-] 5.65 133.75; 95.1 38.65 -78.82 0.08 47.61
Riboswitch 3D2V 14!B:25!B C:G WC [cWW][XIX] 10.43 58.03; 53.71 4.31 -5.6 0.21 18.98
Riboswitch 3D2V 15!B:24!B U:G Wb [cWW][XXVIII] 10.27 69.43; 41.9 27.53 -6.03 0.09 15.95
Riboswitch 3D2V 16!B:23!B U:A WC [cWW][XX] 10.65 55.26; 54.13 1.13 -0.53 0.15 4.3
Riboswitch 3D2V 17!B:22!B G:C WC [cWW][XIX] 10.67 53.24; 53.07 0.17 0.54 0.15 6.9
Riboswitch 3D2V 19!B:21!B U:A H_1 [cWH][XXIII] 8.57 63.07; 46.3 16.78 -1.85 0.12 20.21
Riboswitch 3D2V 25!B:57!B G:A fS [tSW][X] 10.07 112.96; 40.27 72.69 89.65 0.08 65.4
Riboswitch 3D2V 27!B:31!B U:A rH_1 [tWH][XXIV] 9.61 34.77; 19.9 14.87 -161.77 0.06 10.64
Riboswitch 3D2V 28!B:30!B G:G S(sb:O2*-N7)_1 [---][-] 7.01 79.36; 30.51 48.84 -167.59 1.48 31.57
Riboswitch 3D2V 29!B:36!B A:C rpS(sb:O2*-N3) [cSS][-] 5.53 99.6; 155.28 55.68 -29.03 1.46 24.23
Riboswitch 3D2V 37!B:44!B C:A rpS(bs:O2-O2*) [cSS][-] 5.86 108.48; 151.21 42.73 -10.77 1.34 27.79
Riboswitch 3D2V 38!B:72!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.61 90.54; 58.75 31.79 156.13 1.48 27.06
Riboswitch 3D2V 42!B:72!B G:A S [tSH][XI] 8.84 99.58; 16.15 83.43 73.55 0.12 34.23
Riboswitch 3D2V 43!B:68!B A:A rH [tWH][V] 12.37 20.79; 18.75 2.05 174.37 0.32 8.21
Riboswitch 3D2V 44!B:71!B A:G S [tSH][XI] 9.59 1.43; 93.82 92.39 25.87 1.19 29.06
Riboswitch 3D2V 45!B:70!B C:G WC [cWW][XIX] 10.4 56.74; 55.65 1.09 -11.56 0.64 28.61
Riboswitch 3D2V 46!B:69!B C:G WC [cWW][XIX] 10.5 55.22; 54.91 0.32 -10.41 0.01 14.99
Riboswitch 3D2V 47!B:68!B U:A WC [cWW][XX] 10.58 54.66; 53.75 0.92 -14.23 0.46 20.91
Riboswitch 3D2V 48!B:66!B G:G H_1 [cWH][VI] 11.42 61.14; 30.01 31.13 10.57 0.7 14.19
Riboswitch 3D2V 49!B:65!B A:C rWC_Mo [---][-] 10.77 10.78; 86.58 75.8 136.57 0.57 14.82
Riboswitch 3D2V 51!B:64!B C:G WC [cWW][XIX] 10.69 53.91; 51.92 1.99 -9.75 0.4 15.77
Riboswitch 3D2V 52!B:63!B A:U WC [cWW][XX] 10.33 57.23; 55.84 1.39 -14.37 0.15 19.85
Riboswitch 3D2V 53!B:62!B G:C WC [cWW][XIX] 10.65 52.96; 53.61 0.66 -9.63 0.02 11.99
Riboswitch 3D2V 54!B:61!B G:C WC [cWW][XIX] 10.66 53.78; 54.2 0.42 -5.95 0.01 9.3
Riboswitch 3D2V 56!B:59!B U:U S(bp:N3-O2P) [---][-] 8.63 79.93; 32.03 47.89 -161.1 0.55 17.52
Riboswitch 3D2V 56!B:58!B U:A S(sb:O2*-N7) [---][-] 6.64 79.22; 40.25 38.97 -174.26 0.82 27.45