Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3D2X BPC Identified: 82 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3D2X 3!A:77!A G:C WC [cWW][XIX] 10.86 54.17; 54.12 0.05 -3.15 0.29 14.7
Riboswitch 3D2X 4!A:76!A A:U WC [cWW][XX] 10.28 55.12; 59.61 4.49 -8.18 0.28 16.94
Riboswitch 3D2X 5!A:75!A C:G WC [cWW][XIX] 11.18 56.11; 45.47 10.64 -8.35 0.07 16.01
Riboswitch 3D2X 6!A:73!A C:G WC [cWW][XIX] 10.6 52.6; 52.2 0.4 -2.94 0.1 5.06
Riboswitch 3D2X 7!A:39!A A:U WC [cWW][XX] 10.52 52.04; 58.16 6.12 -3.07 0.07 7.26
Riboswitch 3D2X 8!A:72!A G:A rpS [cSS][-] 6.05 113.09; 138.03 24.94 -35.5 0.1 15.73
Riboswitch 3D2X 8!A:38!A G:C WC [cWW][XIX] 10.51 57.14; 58.05 0.92 -6.64 0.24 14.28
Riboswitch 3D2X 9!A:44!A G:A rS [tSS][-] 8.37 88.88; 55.15 33.73 -179.33 0.25 22.99
Riboswitch 3D2X 9!A:37!A G:C WC [cWW][XIX] 10.51 56.53; 56.51 0.02 -5.7 0.97 23.18
Riboswitch 3D2X 10!A:36!A G:C WC [cWW][XIX] 10.71 57.41; 50.95 6.45 -7.37 0.05 9.92
Riboswitch 3D2X 11!A:34!A G:G rWb_o [---][-] 13.66 53.54; 4.81 48.72 110.73 0.38 11.08
Riboswitch 3D2X 11!A:30!A G:G rS [tSS][IV] 8.53 80.99; 73.23 7.76 -170.24 0.89 18.64
Riboswitch 3D2X 12!A:33!A U:A H_1 [cWH][XXIII] 7.88 73.6; 54.02 19.57 -3.22 1.08 27.16
Riboswitch 3D2X 13!A:59!A G:U rpS [cSS][-] 6.88 103.96; 119.3 15.34 -40.47 1.16 36.55
Riboswitch 3D2X 13!A:26!A G:C WC [cWW][XIX] 10.85 50.89; 51.29 0.4 -4.6 0.33 19.81
Riboswitch 3D2X 14!A:58!A C:A rpS(sb:O2*-N3) [cSS][-] 5.69 138.74; 95.29 43.45 -78.78 0.06 41.2
Riboswitch 3D2X 14!A:25!A C:G WC [cWW][XIX] 10.64 56.5; 51.92 4.58 -6.07 0.56 23.09
Riboswitch 3D2X 15!A:24!A U:G Wb [cWW][XXVIII] 10.41 63.74; 43.32 20.42 0.35 0.35 14.54
Riboswitch 3D2X 16!A:23!A U:A WC [cWW][XX] 10.59 55.06; 52.36 2.7 7.41 0.16 4.34
Riboswitch 3D2X 17!A:22!A G:C WC [cWW][XIX] 10.47 54.4; 55.41 1.01 2.27 0.11 4.28
Riboswitch 3D2X 18!A:20!A U:C fS(sb:O2*-N4) [---][-] 9.04 104.64; 25.24 79.4 14.81 1.61 20.21
Riboswitch 3D2X 19!A:21!A U:A H_1 [cWH][XXIII] 8.26 62.29; 46.29 16.0 3.28 0.94 31.64
Riboswitch 3D2X 25!A:57!A G:A fS [tSW][X] 10.71 106.83; 40.68 66.15 83.85 0.3 67.5
Riboswitch 3D2X 27!A:31!A U:A rH_1 [tWH][XXIV] 9.59 34.65; 20.43 14.22 -169.89 0.11 6.57
Riboswitch 3D2X 29!A:36!A A:C rpS(sb:O2*-N3) [cSS][-] 5.46 101.7; 148.97 47.27 -32.96 0.75 19.2
Riboswitch 3D2X 37!A:44!A C:A rpS(bs:O2-O2*) [cSS][-] 5.65 108.78; 150.36 41.58 -1.95 1.88 31.3
Riboswitch 3D2X 38!A:72!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.74 93.16; 55.82 37.34 155.56 1.44 24.82
Riboswitch 3D2X 42!A:72!A G:A S [tSH][XI] 8.87 100.08; 15.05 85.04 79.61 0.3 34.3
Riboswitch 3D2X 43!A:68!A A:A rH [tWH][V] 12.47 21.33; 19.86 1.47 -173.88 0.28 7.85
Riboswitch 3D2X 44!A:71!A A:G S [tSH][XI] 9.72 0.74; 95.09 94.34 138.87 1.26 25.97
Riboswitch 3D2X 45!A:70!A C:G WC [cWW][XIX] 10.35 54.33; 53.63 0.7 -10.25 0.56 28.48
Riboswitch 3D2X 46!A:69!A C:G WC [cWW][XIX] 10.45 53.4; 57.32 3.93 -9.08 0.14 18.64
Riboswitch 3D2X 47!A:68!A U:A WC [cWW][XX] 10.75 52.8; 51.98 0.82 -12.18 0.34 20.76
Riboswitch 3D2X 48!A:66!A G:G H_1 [cWH][VI] 11.46 59.25; 27.45 31.8 13.24 0.72 15.59
Riboswitch 3D2X 49!A:65!A A:C rWC_Mo [---][-] 10.83 13.18; 84.73 71.54 136.0 0.74 17.35
Riboswitch 3D2X 51!A:64!A C:G WC [cWW][XIX] 10.76 54.1; 51.19 2.91 -9.37 0.53 18.3
Riboswitch 3D2X 52!A:63!A A:U WC [cWW][XX] 10.39 51.41; 54.94 3.53 -10.61 0.03 15.78
Riboswitch 3D2X 53!A:62!A G:C WC [cWW][XIX] 10.54 49.53; 53.53 4.0 -8.52 0.06 10.17
Riboswitch 3D2X 54!A:61!A G:C WC [cWW][XIX] 10.67 55.93; 51.33 4.6 -4.33 0.04 6.41
Riboswitch 3D2X 56!A:59!A U:U S(bp:N3-O2P) [---][-] 8.57 80.24; 32.32 47.92 -162.22 0.69 13.57
Riboswitch 3D2X 56!A:58!A U:A S(sb:O2*-N7) [---][-] 6.43 80.05; 39.51 40.54 -169.46 1.11 22.65
Riboswitch 3D2X 3!B:77!B G:C WC [cWW][XIX] 10.49 61.81; 53.73 8.09 5.16 0.6 13.3
Riboswitch 3D2X 4!B:76!B A:U WC [cWW][XX] 10.77 60.48; 52.37 8.12 -4.84 0.05 7.88
Riboswitch 3D2X 5!B:75!B C:G WC [cWW][XIX] 10.69 56.93; 52.4 4.54 -4.71 0.19 14.51
Riboswitch 3D2X 6!B:73!B C:G WC [cWW][XIX] 11.01 49.24; 51.79 2.55 -0.91 0.33 7.91
Riboswitch 3D2X 7!B:39!B A:U WC [cWW][XX] 10.64 52.51; 59.91 7.4 -1.27 0.07 3.86
Riboswitch 3D2X 8!B:72!B G:A rpS [cSS][-] 5.83 103.76; 146.03 42.27 -37.79 0.88 6.3
Riboswitch 3D2X 8!B:38!B G:C WC [cWW][XIX] 10.57 49.81; 59.55 9.74 -9.23 0.03 18.4
Riboswitch 3D2X 9!B:44!B G:A rS [tSS][-] 7.75 88.93; 57.33 31.6 176.36 0.3 14.09
Riboswitch 3D2X 9!B:37!B G:C WC [cWW][XIX] 10.22 56.49; 57.96 1.46 -4.93 0.7 27.03
Riboswitch 3D2X 10!B:36!B G:C WC [cWW][XIX] 10.97 53.07; 51.58 1.49 -12.83 0.04 18.59
Riboswitch 3D2X 11!B:34!B G:G rWb_o [---][-] 14.01 47.47; 3.98 43.5 145.92 0.17 12.74
Riboswitch 3D2X 11!B:30!B G:G rS [tSS][IV] 8.54 75.2; 76.89 1.69 -168.75 0.66 18.77
Riboswitch 3D2X 12!B:33!B U:A H_1 [cWH][XXIII] 7.9 69.4; 60.43 8.98 -0.5 1.25 26.66
Riboswitch 3D2X 13!B:59!B G:U rpS [cSS][-] 6.52 107.41; 118.34 10.92 -38.97 1.29 35.72
Riboswitch 3D2X 13!B:26!B G:C WC [cWW][XIX] 10.89 53.86; 51.06 2.79 -2.45 0.35 13.37
Riboswitch 3D2X 14!B:58!B C:A rpS(sb:O2*-N3) [cSS][-] 5.61 136.81; 95.63 41.17 -75.63 0.24 40.46
Riboswitch 3D2X 14!B:25!B C:G WC [cWW][XIX] 10.46 56.71; 51.94 4.77 -4.06 0.26 25.07
Riboswitch 3D2X 15!B:24!B U:G Wb [cWW][XXVIII] 10.37 70.1; 42.69 27.41 1.31 0.23 9.93
Riboswitch 3D2X 16!B:23!B U:A WC [cWW][XX] 10.69 55.49; 53.19 2.29 1.18 0.12 7.12
Riboswitch 3D2X 17!B:22!B G:C WC [cWW][XIX] 10.72 55.4; 52.35 3.05 2.05 0.0 6.24
Riboswitch 3D2X 18!B:20!B U:C fS(sb:O2*-N4) [---][-] 9.13 101.57; 24.12 77.45 16.03 1.38 32.7
Riboswitch 3D2X 19!B:21!B U:A H_1 [cWH][XXIII] 8.43 66.45; 43.01 23.45 0.15 0.28 22.84
Riboswitch 3D2X 25!B:57!B G:A fS [tSW][X] 10.47 109.27; 40.29 68.98 87.43 0.24 63.98
Riboswitch 3D2X 27!B:31!B U:A rH_1 [tWH][XXIV] 9.63 35.04; 18.12 16.92 -156.38 0.29 12.81
Riboswitch 3D2X 29!B:36!B A:C rpS(sb:O2*-N3) [cSS][-] 5.66 105.92; 152.55 46.64 -24.88 1.06 20.32
Riboswitch 3D2X 37!B:44!B C:A rpS(bs:O2-O2*) [cSS][-] 5.56 106.49; 156.29 49.8 -0.8 1.03 26.87
Riboswitch 3D2X 38!B:72!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.6 92.97; 59.24 33.73 160.31 1.12 21.05
Riboswitch 3D2X 42!B:72!B G:A S [tSH][XI] 9.02 100.34; 17.58 82.76 68.66 0.26 37.08
Riboswitch 3D2X 43!B:68!B A:A rH [tWH][V] 12.52 23.27; 17.56 5.71 167.2 0.34 6.85
Riboswitch 3D2X 44!B:71!B A:G S [tSH][XI] 9.69 0.78; 94.37 93.58 -25.59 1.3 30.69
Riboswitch 3D2X 45!B:70!B C:G WC [cWW][XIX] 10.58 54.22; 54.49 0.27 -9.18 0.71 30.06
Riboswitch 3D2X 46!B:69!B C:G WC [cWW][XIX] 10.5 56.16; 56.35 0.19 -8.61 0.3 17.4
Riboswitch 3D2X 47!B:68!B U:A WC [cWW][XX] 10.49 52.79; 56.09 3.3 -10.51 0.8 21.35
Riboswitch 3D2X 48!B:66!B G:G H_1 [cWH][VI] 11.47 58.89; 26.17 32.72 12.23 0.58 14.86
Riboswitch 3D2X 49!B:65!B A:C rWC_Mo [---][-] 10.9 12.73; 84.62 71.89 129.58 0.56 17.78
Riboswitch 3D2X 51!B:64!B C:G WC [cWW][XIX] 10.86 50.03; 53.12 3.09 -12.15 0.53 21.58
Riboswitch 3D2X 52!B:63!B A:U WC [cWW][XX] 10.19 53.21; 60.45 7.24 -7.99 0.25 14.91
Riboswitch 3D2X 53!B:62!B G:C WC [cWW][XIX] 10.64 52.6; 52.75 0.15 -5.28 0.03 11.34
Riboswitch 3D2X 54!B:61!B G:C WC [cWW][XIX] 10.77 52.34; 52.3 0.03 -9.72 0.23 10.17
Riboswitch 3D2X 56!B:59!B U:U S(bp:N3-O2P) [---][-] 8.76 80.02; 31.99 48.03 -161.41 0.59 15.36
Riboswitch 3D2X 56!B:58!B U:A S(sb:O2*-N7) [---][-] 6.41 82.19; 40.52 41.67 -170.75 0.98 25.01