Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3D2X
BPC Identified: 82
Ambiguities: 0
Riboswitch |
3D2X |
3!A:77!A |
G:C |
WC [cWW][XIX] |
10.86 |
54.17; 54.12 |
0.05 |
-3.15 |
0.29 |
14.7 |
Riboswitch |
3D2X |
4!A:76!A |
A:U |
WC [cWW][XX] |
10.28 |
55.12; 59.61 |
4.49 |
-8.18 |
0.28 |
16.94 |
Riboswitch |
3D2X |
5!A:75!A |
C:G |
WC [cWW][XIX] |
11.18 |
56.11; 45.47 |
10.64 |
-8.35 |
0.07 |
16.01 |
Riboswitch |
3D2X |
6!A:73!A |
C:G |
WC [cWW][XIX] |
10.6 |
52.6; 52.2 |
0.4 |
-2.94 |
0.1 |
5.06 |
Riboswitch |
3D2X |
7!A:39!A |
A:U |
WC [cWW][XX] |
10.52 |
52.04; 58.16 |
6.12 |
-3.07 |
0.07 |
7.26 |
Riboswitch |
3D2X |
8!A:72!A |
G:A |
rpS [cSS][-] |
6.05 |
113.09; 138.03 |
24.94 |
-35.5 |
0.1 |
15.73 |
Riboswitch |
3D2X |
8!A:38!A |
G:C |
WC [cWW][XIX] |
10.51 |
57.14; 58.05 |
0.92 |
-6.64 |
0.24 |
14.28 |
Riboswitch |
3D2X |
9!A:44!A |
G:A |
rS [tSS][-] |
8.37 |
88.88; 55.15 |
33.73 |
-179.33 |
0.25 |
22.99 |
Riboswitch |
3D2X |
9!A:37!A |
G:C |
WC [cWW][XIX] |
10.51 |
56.53; 56.51 |
0.02 |
-5.7 |
0.97 |
23.18 |
Riboswitch |
3D2X |
10!A:36!A |
G:C |
WC [cWW][XIX] |
10.71 |
57.41; 50.95 |
6.45 |
-7.37 |
0.05 |
9.92 |
Riboswitch |
3D2X |
11!A:34!A |
G:G |
rWb_o [---][-] |
13.66 |
53.54; 4.81 |
48.72 |
110.73 |
0.38 |
11.08 |
Riboswitch |
3D2X |
11!A:30!A |
G:G |
rS [tSS][IV] |
8.53 |
80.99; 73.23 |
7.76 |
-170.24 |
0.89 |
18.64 |
Riboswitch |
3D2X |
12!A:33!A |
U:A |
H_1 [cWH][XXIII] |
7.88 |
73.6; 54.02 |
19.57 |
-3.22 |
1.08 |
27.16 |
Riboswitch |
3D2X |
13!A:59!A |
G:U |
rpS [cSS][-] |
6.88 |
103.96; 119.3 |
15.34 |
-40.47 |
1.16 |
36.55 |
Riboswitch |
3D2X |
13!A:26!A |
G:C |
WC [cWW][XIX] |
10.85 |
50.89; 51.29 |
0.4 |
-4.6 |
0.33 |
19.81 |
Riboswitch |
3D2X |
14!A:58!A |
C:A |
rpS(sb:O2*-N3) [cSS][-] |
5.69 |
138.74; 95.29 |
43.45 |
-78.78 |
0.06 |
41.2 |
Riboswitch |
3D2X |
14!A:25!A |
C:G |
WC [cWW][XIX] |
10.64 |
56.5; 51.92 |
4.58 |
-6.07 |
0.56 |
23.09 |
Riboswitch |
3D2X |
15!A:24!A |
U:G |
Wb [cWW][XXVIII] |
10.41 |
63.74; 43.32 |
20.42 |
0.35 |
0.35 |
14.54 |
Riboswitch |
3D2X |
16!A:23!A |
U:A |
WC [cWW][XX] |
10.59 |
55.06; 52.36 |
2.7 |
7.41 |
0.16 |
4.34 |
Riboswitch |
3D2X |
17!A:22!A |
G:C |
WC [cWW][XIX] |
10.47 |
54.4; 55.41 |
1.01 |
2.27 |
0.11 |
4.28 |
Riboswitch |
3D2X |
18!A:20!A |
U:C |
fS(sb:O2*-N4) [---][-] |
9.04 |
104.64; 25.24 |
79.4 |
14.81 |
1.61 |
20.21 |
Riboswitch |
3D2X |
19!A:21!A |
U:A |
H_1 [cWH][XXIII] |
8.26 |
62.29; 46.29 |
16.0 |
3.28 |
0.94 |
31.64 |
Riboswitch |
3D2X |
25!A:57!A |
G:A |
fS [tSW][X] |
10.71 |
106.83; 40.68 |
66.15 |
83.85 |
0.3 |
67.5 |
Riboswitch |
3D2X |
27!A:31!A |
U:A |
rH_1 [tWH][XXIV] |
9.59 |
34.65; 20.43 |
14.22 |
-169.89 |
0.11 |
6.57 |
Riboswitch |
3D2X |
29!A:36!A |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.46 |
101.7; 148.97 |
47.27 |
-32.96 |
0.75 |
19.2 |
Riboswitch |
3D2X |
37!A:44!A |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.65 |
108.78; 150.36 |
41.58 |
-1.95 |
1.88 |
31.3 |
Riboswitch |
3D2X |
38!A:72!A |
C:A |
fS(sb:O2*-N1)_1 [tSS][-] |
8.74 |
93.16; 55.82 |
37.34 |
155.56 |
1.44 |
24.82 |
Riboswitch |
3D2X |
42!A:72!A |
G:A |
S [tSH][XI] |
8.87 |
100.08; 15.05 |
85.04 |
79.61 |
0.3 |
34.3 |
Riboswitch |
3D2X |
43!A:68!A |
A:A |
rH [tWH][V] |
12.47 |
21.33; 19.86 |
1.47 |
-173.88 |
0.28 |
7.85 |
Riboswitch |
3D2X |
44!A:71!A |
A:G |
S [tSH][XI] |
9.72 |
0.74; 95.09 |
94.34 |
138.87 |
1.26 |
25.97 |
Riboswitch |
3D2X |
45!A:70!A |
C:G |
WC [cWW][XIX] |
10.35 |
54.33; 53.63 |
0.7 |
-10.25 |
0.56 |
28.48 |
Riboswitch |
3D2X |
46!A:69!A |
C:G |
WC [cWW][XIX] |
10.45 |
53.4; 57.32 |
3.93 |
-9.08 |
0.14 |
18.64 |
Riboswitch |
3D2X |
47!A:68!A |
U:A |
WC [cWW][XX] |
10.75 |
52.8; 51.98 |
0.82 |
-12.18 |
0.34 |
20.76 |
Riboswitch |
3D2X |
48!A:66!A |
G:G |
H_1 [cWH][VI] |
11.46 |
59.25; 27.45 |
31.8 |
13.24 |
0.72 |
15.59 |
Riboswitch |
3D2X |
49!A:65!A |
A:C |
rWC_Mo [---][-] |
10.83 |
13.18; 84.73 |
71.54 |
136.0 |
0.74 |
17.35 |
Riboswitch |
3D2X |
51!A:64!A |
C:G |
WC [cWW][XIX] |
10.76 |
54.1; 51.19 |
2.91 |
-9.37 |
0.53 |
18.3 |
Riboswitch |
3D2X |
52!A:63!A |
A:U |
WC [cWW][XX] |
10.39 |
51.41; 54.94 |
3.53 |
-10.61 |
0.03 |
15.78 |
Riboswitch |
3D2X |
53!A:62!A |
G:C |
WC [cWW][XIX] |
10.54 |
49.53; 53.53 |
4.0 |
-8.52 |
0.06 |
10.17 |
Riboswitch |
3D2X |
54!A:61!A |
G:C |
WC [cWW][XIX] |
10.67 |
55.93; 51.33 |
4.6 |
-4.33 |
0.04 |
6.41 |
Riboswitch |
3D2X |
56!A:59!A |
U:U |
S(bp:N3-O2P) [---][-] |
8.57 |
80.24; 32.32 |
47.92 |
-162.22 |
0.69 |
13.57 |
Riboswitch |
3D2X |
56!A:58!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.43 |
80.05; 39.51 |
40.54 |
-169.46 |
1.11 |
22.65 |
Riboswitch |
3D2X |
3!B:77!B |
G:C |
WC [cWW][XIX] |
10.49 |
61.81; 53.73 |
8.09 |
5.16 |
0.6 |
13.3 |
Riboswitch |
3D2X |
4!B:76!B |
A:U |
WC [cWW][XX] |
10.77 |
60.48; 52.37 |
8.12 |
-4.84 |
0.05 |
7.88 |
Riboswitch |
3D2X |
5!B:75!B |
C:G |
WC [cWW][XIX] |
10.69 |
56.93; 52.4 |
4.54 |
-4.71 |
0.19 |
14.51 |
Riboswitch |
3D2X |
6!B:73!B |
C:G |
WC [cWW][XIX] |
11.01 |
49.24; 51.79 |
2.55 |
-0.91 |
0.33 |
7.91 |
Riboswitch |
3D2X |
7!B:39!B |
A:U |
WC [cWW][XX] |
10.64 |
52.51; 59.91 |
7.4 |
-1.27 |
0.07 |
3.86 |
Riboswitch |
3D2X |
8!B:72!B |
G:A |
rpS [cSS][-] |
5.83 |
103.76; 146.03 |
42.27 |
-37.79 |
0.88 |
6.3 |
Riboswitch |
3D2X |
8!B:38!B |
G:C |
WC [cWW][XIX] |
10.57 |
49.81; 59.55 |
9.74 |
-9.23 |
0.03 |
18.4 |
Riboswitch |
3D2X |
9!B:44!B |
G:A |
rS [tSS][-] |
7.75 |
88.93; 57.33 |
31.6 |
176.36 |
0.3 |
14.09 |
Riboswitch |
3D2X |
9!B:37!B |
G:C |
WC [cWW][XIX] |
10.22 |
56.49; 57.96 |
1.46 |
-4.93 |
0.7 |
27.03 |
Riboswitch |
3D2X |
10!B:36!B |
G:C |
WC [cWW][XIX] |
10.97 |
53.07; 51.58 |
1.49 |
-12.83 |
0.04 |
18.59 |
Riboswitch |
3D2X |
11!B:34!B |
G:G |
rWb_o [---][-] |
14.01 |
47.47; 3.98 |
43.5 |
145.92 |
0.17 |
12.74 |
Riboswitch |
3D2X |
11!B:30!B |
G:G |
rS [tSS][IV] |
8.54 |
75.2; 76.89 |
1.69 |
-168.75 |
0.66 |
18.77 |
Riboswitch |
3D2X |
12!B:33!B |
U:A |
H_1 [cWH][XXIII] |
7.9 |
69.4; 60.43 |
8.98 |
-0.5 |
1.25 |
26.66 |
Riboswitch |
3D2X |
13!B:59!B |
G:U |
rpS [cSS][-] |
6.52 |
107.41; 118.34 |
10.92 |
-38.97 |
1.29 |
35.72 |
Riboswitch |
3D2X |
13!B:26!B |
G:C |
WC [cWW][XIX] |
10.89 |
53.86; 51.06 |
2.79 |
-2.45 |
0.35 |
13.37 |
Riboswitch |
3D2X |
14!B:58!B |
C:A |
rpS(sb:O2*-N3) [cSS][-] |
5.61 |
136.81; 95.63 |
41.17 |
-75.63 |
0.24 |
40.46 |
Riboswitch |
3D2X |
14!B:25!B |
C:G |
WC [cWW][XIX] |
10.46 |
56.71; 51.94 |
4.77 |
-4.06 |
0.26 |
25.07 |
Riboswitch |
3D2X |
15!B:24!B |
U:G |
Wb [cWW][XXVIII] |
10.37 |
70.1; 42.69 |
27.41 |
1.31 |
0.23 |
9.93 |
Riboswitch |
3D2X |
16!B:23!B |
U:A |
WC [cWW][XX] |
10.69 |
55.49; 53.19 |
2.29 |
1.18 |
0.12 |
7.12 |
Riboswitch |
3D2X |
17!B:22!B |
G:C |
WC [cWW][XIX] |
10.72 |
55.4; 52.35 |
3.05 |
2.05 |
0.0 |
6.24 |
Riboswitch |
3D2X |
18!B:20!B |
U:C |
fS(sb:O2*-N4) [---][-] |
9.13 |
101.57; 24.12 |
77.45 |
16.03 |
1.38 |
32.7 |
Riboswitch |
3D2X |
19!B:21!B |
U:A |
H_1 [cWH][XXIII] |
8.43 |
66.45; 43.01 |
23.45 |
0.15 |
0.28 |
22.84 |
Riboswitch |
3D2X |
25!B:57!B |
G:A |
fS [tSW][X] |
10.47 |
109.27; 40.29 |
68.98 |
87.43 |
0.24 |
63.98 |
Riboswitch |
3D2X |
27!B:31!B |
U:A |
rH_1 [tWH][XXIV] |
9.63 |
35.04; 18.12 |
16.92 |
-156.38 |
0.29 |
12.81 |
Riboswitch |
3D2X |
29!B:36!B |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.66 |
105.92; 152.55 |
46.64 |
-24.88 |
1.06 |
20.32 |
Riboswitch |
3D2X |
37!B:44!B |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.56 |
106.49; 156.29 |
49.8 |
-0.8 |
1.03 |
26.87 |
Riboswitch |
3D2X |
38!B:72!B |
C:A |
fS(sb:O2*-N1)_1 [tSS][-] |
8.6 |
92.97; 59.24 |
33.73 |
160.31 |
1.12 |
21.05 |
Riboswitch |
3D2X |
42!B:72!B |
G:A |
S [tSH][XI] |
9.02 |
100.34; 17.58 |
82.76 |
68.66 |
0.26 |
37.08 |
Riboswitch |
3D2X |
43!B:68!B |
A:A |
rH [tWH][V] |
12.52 |
23.27; 17.56 |
5.71 |
167.2 |
0.34 |
6.85 |
Riboswitch |
3D2X |
44!B:71!B |
A:G |
S [tSH][XI] |
9.69 |
0.78; 94.37 |
93.58 |
-25.59 |
1.3 |
30.69 |
Riboswitch |
3D2X |
45!B:70!B |
C:G |
WC [cWW][XIX] |
10.58 |
54.22; 54.49 |
0.27 |
-9.18 |
0.71 |
30.06 |
Riboswitch |
3D2X |
46!B:69!B |
C:G |
WC [cWW][XIX] |
10.5 |
56.16; 56.35 |
0.19 |
-8.61 |
0.3 |
17.4 |
Riboswitch |
3D2X |
47!B:68!B |
U:A |
WC [cWW][XX] |
10.49 |
52.79; 56.09 |
3.3 |
-10.51 |
0.8 |
21.35 |
Riboswitch |
3D2X |
48!B:66!B |
G:G |
H_1 [cWH][VI] |
11.47 |
58.89; 26.17 |
32.72 |
12.23 |
0.58 |
14.86 |
Riboswitch |
3D2X |
49!B:65!B |
A:C |
rWC_Mo [---][-] |
10.9 |
12.73; 84.62 |
71.89 |
129.58 |
0.56 |
17.78 |
Riboswitch |
3D2X |
51!B:64!B |
C:G |
WC [cWW][XIX] |
10.86 |
50.03; 53.12 |
3.09 |
-12.15 |
0.53 |
21.58 |
Riboswitch |
3D2X |
52!B:63!B |
A:U |
WC [cWW][XX] |
10.19 |
53.21; 60.45 |
7.24 |
-7.99 |
0.25 |
14.91 |
Riboswitch |
3D2X |
53!B:62!B |
G:C |
WC [cWW][XIX] |
10.64 |
52.6; 52.75 |
0.15 |
-5.28 |
0.03 |
11.34 |
Riboswitch |
3D2X |
54!B:61!B |
G:C |
WC [cWW][XIX] |
10.77 |
52.34; 52.3 |
0.03 |
-9.72 |
0.23 |
10.17 |
Riboswitch |
3D2X |
56!B:59!B |
U:U |
S(bp:N3-O2P) [---][-] |
8.76 |
80.02; 31.99 |
48.03 |
-161.41 |
0.59 |
15.36 |
Riboswitch |
3D2X |
56!B:58!B |
U:A |
S(sb:O2*-N7) [---][-] |
6.41 |
82.19; 40.52 |
41.67 |
-170.75 |
0.98 |
25.01 |