Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3DD2
BPC Identified: 11
Ambiguities: 0
| RNA_aptamer |
3DD2 |
1!B:25!B |
G:C |
WC [cWW][XIX] |
10.75 |
52.43; 56.08 |
3.66 |
3.03 |
0.22 |
4.76 |
| RNA_aptamer |
3DD2 |
2!B:24!B |
G:C |
WC [cWW][XIX] |
10.43 |
54.64; 58.9 |
4.26 |
-0.74 |
0.05 |
4.5 |
| RNA_aptamer |
3DD2 |
3!B:23!B |
G:C |
WC [cWW][XIX] |
10.4 |
57.23; 55.94 |
1.29 |
-2.03 |
0.1 |
6.53 |
| RNA_aptamer |
3DD2 |
5!B:22!B |
A:A |
pfS [cSW][-] |
8.72 |
132.3; 37.46 |
94.83 |
10.5 |
0.69 |
49.86 |
| RNA_aptamer |
3DD2 |
7!B:19!B |
A:C |
rH* [---][-] |
12.75 |
49.49; 11.36 |
38.14 |
103.2 |
0.78 |
25.93 |
| RNA_aptamer |
3DD2 |
8!B:21!B |
A:U |
WC [cWW][XX] |
10.62 |
53.38; 55.93 |
2.55 |
-12.52 |
0.09 |
13.3 |
| RNA_aptamer |
3DD2 |
8!B:18!B |
A:A |
rS* [tHH][-] |
11.2 |
9.38; 15.71 |
6.33 |
126.85 |
0.32 |
26.34 |
| RNA_aptamer |
3DD2 |
9!B:20!B |
A:U |
WC [cWW][XX] |
10.52 |
52.86; 55.07 |
2.21 |
-22.47 |
0.04 |
21.22 |
| RNA_aptamer |
3DD2 |
10!B:19!B |
G:C |
WC [cWW][XIX] |
10.78 |
53.85; 51.68 |
2.17 |
-6.0 |
0.0 |
9.52 |
| RNA_aptamer |
3DD2 |
11!B:16!B |
C:G |
WC [cWW][XIX] |
10.65 |
55.52; 54.03 |
1.5 |
-3.37 |
0.31 |
12.91 |
| RNA_aptamer |
3DD2 |
12!B:15!B |
U:A |
pfS* [cWS][-] |
5.84 |
62.46; 129.23 |
66.77 |
-39.97 |
0.47 |
28.26 |