Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DEG BPC Identified: 144 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 3DEG 1!A:72!A G:C WC [cWW][XIX] 10.84 44.61; 52.55 7.94 20.45 1.21 39.34
rRNA 3DEG 2!A:71!A C:G WC [cWW][XIX] 10.46 53.66; 57.48 3.82 -4.33 0.23 10.92
rRNA 3DEG 3!A:70!A G:C WC [cWW][XIX] 10.75 52.97; 53.82 0.85 -7.64 0.28 10.56
rRNA 3DEG 4!A:69!A G:U Wb [cWW][XXVIII] 10.44 42.79; 68.51 25.72 -7.7 0.26 10.51
rRNA 3DEG 5!A:68!A A:U WC [cWW][XX] 10.25 57.45; 58.17 0.72 -15.34 0.17 20.89
rRNA 3DEG 6!A:67!A U:A WC [cWW][XX] 10.15 56.8; 59.6 2.8 -15.45 0.38 22.4
rRNA 3DEG 7!A:66!A U:A WC [cWW][XX] 10.39 55.48; 53.79 1.69 -1.64 0.09 4.0
rRNA 3DEG 8!A:21!A U:A fS(sb:O2*-N1) [tSW][-] 8.61 112.07; 48.76 63.32 156.83 0.21 18.44
rRNA 3DEG 8!A:14!A U:A rH_1 [tWH][XXIV] 9.65 29.67; 19.67 9.99 177.91 0.45 11.94
rRNA 3DEG 9!A:23!A A:A rS* [tHH][-] 10.9 14.59; 10.66 3.93 130.32 0.39 11.76
rRNA 3DEG 10!A:45!A G:G pS_1 [cSH][-] 8.61 39.49; 126.91 87.42 -2.74 0.37 25.98
rRNA 3DEG 10!A:25!A G:C WC [cWW][XIX] 10.46 52.71; 55.68 2.97 -6.75 0.25 10.11
rRNA 3DEG 11!A:24!A C:G WC [cWW][XIX] 10.36 56.39; 56.15 0.24 -9.31 0.17 19.95
rRNA 3DEG 12!A:23!A U:A WC [cWW][XX] 10.67 53.52; 52.53 0.99 -8.23 0.11 11.26
rRNA 3DEG 13!A:22!A C:G WC [cWW][XIX] 10.63 55.2; 54.62 0.59 -4.15 0.07 4.45
rRNA 3DEG 15!A:48!A G:C rWb [tWW][XXII] 10.43 37.36; 61.01 23.65 -177.21 0.02 1.8
rRNA 3DEG 18!A:55!A G:U fS_PSU [---][-] 8.62 31.37; 128.63 97.26 -124.36 0.27 15.86
rRNA 3DEG 19!A:56!A G:C WC [cWW][XIX] 10.45 57.77; 54.52 3.25 -27.16 1.14 35.66
rRNA 3DEG 22!A:46!A G:G rH_1 [tWH][VII] 11.22 31.16; 29.06 2.11 -176.0 0.2 7.08
rRNA 3DEG 26!A:44!A G:A WC [cWW][VIII] 12.59 42.26; 49.63 7.36 -25.85 0.11 41.59
rRNA 3DEG 27!A:43!A C:G WC [cWW][XIX] 10.6 51.85; 52.37 0.52 -17.66 0.25 22.02
rRNA 3DEG 28!A:42!A C:G WC [cWW][XIX] 10.45 53.65; 55.94 2.28 -11.18 0.24 10.98
rRNA 3DEG 29!A:41!A A:U WC [cWW][XX] 10.07 61.86; 62.77 0.91 -6.93 0.04 10.02
rRNA 3DEG 30!A:40!A G:C WC [cWW][XIX] 10.71 57.22; 48.53 8.69 -10.76 0.09 15.04
rRNA 3DEG 31!A:39!A A:U Wb*_PSU [---][-] 10.92 64.64; 59.55 5.09 -9.44 0.26 15.99
rRNA 3DEG 32!A:38!A C:A sWb [---][-] 10.87 89.74; 19.49 70.25 -9.8 0.84 5.15
rRNA 3DEG 47!A:50!A U:U rpS(ps:O1P-O2*) [---][-] 8.83 81.32; 110.24 28.92 155.69 1.16 40.53
rRNA 3DEG 49!A:65!A C:G WC [cWW][XIX] 10.65 52.45; 55.28 2.84 -2.66 0.02 7.27
rRNA 3DEG 50!A:64!A U:A WC [cWW][XX] 10.45 54.38; 56.08 1.69 -6.71 0.13 8.22
rRNA 3DEG 51!A:63!A G:C WC [cWW][XIX] 10.46 55.98; 56.81 0.83 -5.52 0.15 13.33
rRNA 3DEG 52!A:62!A U:A WC [cWW][XX] 10.55 52.28; 57.51 5.23 -7.8 0.14 7.22
rRNA 3DEG 53!A:61!A G:C WC [cWW][XIX] 10.55 53.89; 55.81 1.93 -2.92 0.44 12.3
rRNA 3DEG 54!A:58!A U:A rH_1 [tWH][XXIV] 9.78 31.79; 23.32 8.47 173.38 0.02 2.62
rRNA 3DEG 55!A:57!A U:G S_PSU(sb:O2*-N7) [---][-] 6.71 92.99; 39.74 53.25 -178.31 2.02 22.64
rRNA 3DEG 2!B:71!B G:C WC [cWW][XIX] 10.71 51.12; 56.68 5.56 -0.96 0.4 9.23
rRNA 3DEG 3!B:70!B C:G WC [cWW][XIX] 10.86 50.81; 47.93 2.87 -14.41 0.63 25.28
rRNA 3DEG 4!B:69!B G:C WC [cWW][XIX] 10.22 49.07; 60.21 11.14 26.29 0.91 13.73
rRNA 3DEG 5!B:68!B G:C WC [cWW][XIX] 10.43 62.73; 57.38 5.35 -3.67 0.36 9.1
rRNA 3DEG 6!B:67!B G:C Wb* [---][-] 12.09 60.82; 38.76 22.06 6.31 0.14 8.69
rRNA 3DEG 7!B:66!B G:C WC [cWW][XIX] 10.99 45.34; 51.62 6.28 -0.38 0.22 13.03
rRNA 3DEG 8!B:21!B U:A fS(sb:O2*-N1) [tSW][-] 8.38 92.98; 56.46 36.52 166.97 0.56 21.87
rRNA 3DEG 8!B:14!B U:A rH_1 [tWH][XXIV] 9.63 27.81; 24.27 3.53 171.05 0.57 19.13
rRNA 3DEG 10!B:45!B G:G pS_1 [cSH][-] 9.3 48.01; 109.63 61.62 3.19 1.08 18.9
rRNA 3DEG 10!B:25!B G:C WC [cWW][XIX] 10.15 52.25; 63.12 10.87 1.99 0.25 18.28
rRNA 3DEG 11!B:24!B A:U WC [cWW][XX] 10.43 55.12; 58.92 3.81 0.76 0.04 7.83
rRNA 3DEG 12!B:23!B G:C WC [cWW][XIX] 10.73 56.73; 54.14 2.6 -1.03 0.02 8.71
rRNA 3DEG 13!B:22!B C:G WC [cWW][XIX] 10.69 55.41; 55.48 0.08 6.19 0.14 22.78
rRNA 3DEG 14!B:21!B A:A pfS [cSW][-] 9.79 28.6; 117.82 89.21 -1.21 0.15 2.88
rRNA 3DEG 18!B:55!B G:U fS_1 [tSW][-] 9.47 22.46; 97.21 74.75 -158.88 0.73 20.34
rRNA 3DEG 19!B:56!B G:C WC [cWW][XIX] 10.17 58.2; 60.08 1.88 -21.04 1.21 40.87
rRNA 3DEG 26!B:44!B G:A WC [cWW][VIII] 12.93 48.88; 39.83 9.05 -16.92 1.39 33.91
rRNA 3DEG 27!B:43!B U:A WC [cWW][XX] 10.91 48.3; 49.55 1.25 4.15 0.65 19.26
rRNA 3DEG 28!B:42!B C:G WC [cWW][XIX] 10.32 57.89; 56.09 1.8 1.6 0.35 8.05
rRNA 3DEG 29!B:41!B G:C WC [cWW][XIX] 10.33 50.17; 58.08 7.91 0.74 0.0 4.6
rRNA 3DEG 30!B:40!B G:C Wb [---][-] 10.23 47.78; 63.1 15.32 9.11 0.0 6.31
rRNA 3DEG 31!B:39!B G:C WC [cWW][XIX] 10.57 49.3; 54.47 5.17 2.43 0.89 21.53
rRNA 3DEG 32!B:38!B C:A Wb [cWW][-] 10.79 63.76; 23.39 40.38 -0.34 0.07 30.82
rRNA 3DEG 33!B:36!B U:U S(bp:N3-O2P) [---][-] 8.82 78.57; 37.76 40.81 -158.18 1.16 27.66
rRNA 3DEG 33!B:35!B U:A S(sb:O2*-N7) [---][-] 6.41 74.36; 42.82 31.54 -172.76 1.55 27.06
rRNA 3DEG 49!B:65!B G:C WC [cWW][XIX] 11.22 54.09; 41.78 12.31 2.0 0.37 9.85
rRNA 3DEG 50!B:64!B U:G Wb [cWW][XXVIII] 9.88 68.13; 51.9 16.24 -10.41 0.03 28.22
rRNA 3DEG 51!B:63!B C:G WC [cWW][XIX] 11.8 49.45; 52.97 3.52 0.25 0.11 7.31
rRNA 3DEG 52!B:62!B G:C Wb* [---][-] 11.02 60.85; 46.34 14.5 24.49 0.62 21.37
rRNA 3DEG 53!B:61!B G:C WC [cWW][XIX] 10.52 53.55; 56.3 2.76 0.04 0.22 25.39
rRNA 3DEG 54!B:58!B U:A rH_1 [tWH][XXIV] 9.98 24.41; 19.77 4.63 -173.34 0.21 16.16
rRNA 3DEG 55!B:57!B U:A S(sb:O2*-N7) [---][-] 6.97 70.81; 35.47 35.34 -167.13 2.43 27.62
rRNA 3DEG 153!E:168!E C:G WC [cWW][XIX] 10.75 54.23; 53.15 1.07 -1.2 0.15 6.97
rRNA 3DEG 154!E:167!E U:A WC [cWW][XX] 10.54 56.6; 56.66 0.06 2.14 0.01 0.79
rRNA 3DEG 155!E:166!E A:U WC [cWW][XX] 10.82 53.33; 50.31 3.02 -0.81 0.12 3.59
rRNA 3DEG 156!E:165!E C:G WC [cWW][XIX] 10.77 53.68; 52.03 1.66 -0.63 0.18 6.49
rRNA 3DEG 157!E:164!E U:G Wb [cWW][XXVIII] 10.35 69.49; 42.99 26.5 5.07 0.32 2.07
rRNA 3DEG 158!E:163!E G:C WC [cWW][XIX] 10.18 51.18; 64.21 13.03 26.55 0.18 32.46
rRNA 3DEG 159!E:162!E G:A S [tSH][XI] 9.74 88.39; 10.32 78.07 -82.18 0.23 34.6
rRNA 3DEG 159!E:161!E G:A S(sb:O2*-N7) [---][-] 7.65 88.09; 29.89 58.2 -152.29 0.19 37.88
rRNA 3DEG 160!E:347!F A:G fS [tSW][X] 9.93 13.57; 103.26 89.69 -131.61 1.82 47.37
rRNA 3DEG 339!F:350!F C:G WC [cWW][XIX] 10.74 52.66; 53.64 0.98 -3.65 0.25 5.87
rRNA 3DEG 340!F:349!F U:A WC [cWW][XX] 10.05 61.45; 59.12 2.33 -1.46 0.09 4.5
rRNA 3DEG 341!F:348!F C:G WC [cWW][XIX] 10.61 57.65; 52.57 5.08 2.62 0.12 5.39
rRNA 3DEG 342!F:347!F C:G WC [cWW][XIX] 10.56 56.33; 53.99 2.34 7.76 0.21 2.24
rRNA 3DEG 343!F:346!F U:G fS_1 [tSW][-] 9.71 102.16; 21.98 80.18 167.86 0.06 17.0
rRNA 3DEG 1043!G:1112!G C:G WC [cWW][XIX] 10.86 52.61; 49.96 2.65 1.54 0.06 2.88
rRNA 3DEG 1047!G:1111!G G:A S [tSH][XI] 9.84 91.28; 10.09 81.19 -54.43 0.11 12.78
rRNA 3DEG 1048!G:1112!G A:G rS [tSS][-] 7.29 55.16; 79.07 23.92 -155.62 0.78 59.56
rRNA 3DEG 1048!G:1110!G A:G S [tSH][XI] 10.01 14.13; 81.72 67.59 -135.71 0.23 14.68
rRNA 3DEG 1051!G:1108!G G:U Wb [cWW][XXVIII] 10.67 42.29; 64.49 22.2 5.03 0.45 9.72
rRNA 3DEG 1052!G:1107!G C:G WC [cWW][XIX] 10.41 59.19; 55.36 3.83 2.49 0.46 4.09
rRNA 3DEG 1053!G:1106!G C:G WC [cWW][XIX] 10.44 58.23; 54.55 3.68 4.06 0.21 6.15
rRNA 3DEG 1054!G:1105!G A:U WC [cWW][XX] 10.06 59.48; 60.33 0.85 6.95 0.04 3.23
rRNA 3DEG 1055!G:1104!G G:C WC [cWW][XIX] 10.63 55.79; 55.65 0.14 -0.3 0.1 6.78
rRNA 3DEG 1055!G:1085!G G:A rS [tSS][-] 8.13 89.34; 66.08 23.26 168.28 0.34 34.97
rRNA 3DEG 1056!G:1103!G G:A S [tSH][XI] 9.41 94.56; 11.87 82.69 53.99 1.16 5.07
rRNA 3DEG 1057!G:1081!G A:U WC [cWW][XX] 10.54 55.37; 56.2 0.83 -3.22 0.04 1.35
rRNA 3DEG 1058!G:1080!G U:A WC [cWW][XX] 10.31 57.56; 59.53 1.97 0.81 0.02 2.28
rRNA 3DEG 1059!G:1079!G G:C WC [cWW][XIX] 10.83 52.62; 52.9 0.28 1.18 0.01 1.78
rRNA 3DEG 1062!G:1076!G G:C WC [cWW][XIX] 10.77 51.68; 53.86 2.18 1.43 0.11 0.58
rRNA 3DEG 1063!G:1075!G G:C WC [cWW][XIX] 10.73 52.74; 54.22 1.48 1.39 0.04 1.06
rRNA 3DEG 1064!G:1074!G C:G WC [cWW][XIX] 10.7 55.39; 53.76 1.62 -0.39 0.03 0.69
rRNA 3DEG 1065!G:1073!G U:A sWC [---][-] 10.94 88.51; 22.91 65.6 9.97 0.22 19.04
rRNA 3DEG 1066!G:1068!G U:G S(sb:O2*-N7)_1 [---][-] 6.63 83.6; 38.77 44.83 -175.34 1.31 23.7
rRNA 3DEG 1071!G:1091!G G:G H_1 [cWH][VI] 11.69 59.46; 23.41 36.05 -7.56 0.3 10.06
rRNA 3DEG 1072!G:1099!G C:G rH_2 [---][-] 13.4 23.15; 9.61 13.53 6.05 0.03 15.0
rRNA 3DEG 1072!G:1092!G C:C H_1 [---][-] 9.42 75.35; 28.34 47.01 -5.25 0.24 15.52
rRNA 3DEG 1083!G:1086!G U:A Wb*_PSU [---][-] 8.09 80.84; 30.89 49.95 -146.29 1.39 31.28
rRNA 3DEG 1083!G:1085!G U:A S(sb:O2*-N7) [---][-] 6.72 87.89; 40.58 47.31 -158.6 1.48 36.09
rRNA 3DEG 1085!G:1104!G A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.08 149.62; 103.6 46.02 -65.01 0.24 28.19
rRNA 3DEG 1087!G:1102!G G:C WC [cWW][XIX] 10.75 53.38; 54.69 1.31 -1.52 0.07 1.79
rRNA 3DEG 1090!G:1101!G A:U WC [cWW][XX] 10.0 60.74; 62.0 1.26 5.08 0.06 1.38
rRNA 3DEG 1091!G:1100!G G:C WC [cWW][XIX] 10.64 55.14; 55.97 0.83 7.51 0.19 1.76
rRNA 3DEG 1092!G:1099!G C:G WC [cWW][XIX] 10.7 55.34; 53.88 1.46 4.53 0.15 0.7
rRNA 3DEG 1093!G:1098!G G:A S [tSH][XI] 9.69 97.83; 9.2 88.63 6.86 0.0 0.8
rRNA 3DEG 1094!G:1097!G U:U S(bp:N3-O2P) [---][-] 7.09 89.94; 34.11 55.83 -162.11 0.81 11.99
rRNA 3DEG 1094!G:1096!G U:A S(sb:O2*-N7) [---][-] 6.77 78.3; 40.57 37.73 -173.75 1.58 26.61
rRNA 3DEG 2646!I:2674!I C:G WC [cWW][XIX] 10.79 52.22; 50.08 2.14 8.79 0.01 5.92
rRNA 3DEG 2647!I:2673!I U:G Wb [cWW][XXVIII] 10.43 69.67; 40.28 29.39 3.96 0.11 6.46
rRNA 3DEG 2648!I:2672!I G:U Wb [cWW][XXVIII] 10.74 39.18; 62.86 23.68 -0.19 0.0 1.38
rRNA 3DEG 2649!I:2671!I C:G WC [cWW][XIX] 10.77 53.06; 53.73 0.67 0.57 0.23 6.57
rRNA 3DEG 2650!I:2670!I U:A WC [cWW][XX] 10.55 56.17; 55.19 0.97 2.35 0.25 5.83
rRNA 3DEG 2651!I:2669!I C:G WC [cWW][XIX] 10.55 56.73; 56.89 0.15 3.11 0.02 8.24
rRNA 3DEG 2652!I:2668!I C:G WC [cWW][XIX] 10.55 56.97; 56.32 0.65 4.72 0.13 1.62
rRNA 3DEG 2653!I:2667!I U:C sWC [---][-] 9.79 86.17; 26.51 59.67 10.44 0.83 18.78
rRNA 3DEG 2654!I:2666!I A:C rH_1 [rWH][XXV] 11.25 14.82; 27.62 12.81 -68.78 0.09 20.89
rRNA 3DEG 2655!I:2656!I G:U pS* [cHS][-] 6.78 145.2; 47.94 97.26 17.03 0.3 18.58
rRNA 3DEG 2656!I:2665!I U:A rH_1 [tWH][XXIV] 9.49 33.18; 22.48 10.71 177.57 0.11 6.81
rRNA 3DEG 2657!I:2664!I A:G S [tSH][XI] 9.72 7.98; 96.62 88.64 0.52 0.0 2.47
rRNA 3DEG 2658!I:2663!I C:G WC [cWW][XIX] 10.53 56.84; 55.27 1.57 8.41 0.16 2.86
rRNA 3DEG 2659!I:2662!I G:A S [tSH][XI] 8.9 105.2; 11.45 93.74 -88.43 0.52 16.39
rRNA 3DEG 1944!J:2557!K U:G fS*_2 [---][-] 10.5 14.23; 100.43 86.19 29.84 0.14 60.86
rRNA 3DEG 1945!J:1961!J G:C WC [cWW][XIX] 10.75 52.06; 52.62 0.56 -6.15 0.12 1.84
rRNA 3DEG 1946!J:1960!J U:A WC [cWW][XX] 10.42 55.48; 56.14 0.66 -6.58 0.03 5.27
rRNA 3DEG 1947!J:1959!J C:G WC [cWW][XIX] 10.52 57.93; 55.21 2.72 -1.92 0.43 12.58
rRNA 3DEG 1948!J:1958!J G:C WC [cWW][XIX] 10.54 55.46; 55.9 0.43 -1.32 0.27 6.86
rRNA 3DEG 1949!J:1957!J G:C WC [cWW][XIX] 10.74 53.04; 54.11 1.07 -0.47 0.28 9.64
rRNA 3DEG 1950!J:1956!J G:U sWb* [---][-] 12.59 70.4; 26.69 43.71 24.13 0.6 19.09
rRNA 3DEG 1951!J:1953!J U:A S(sb:O2*-N7) [---][-] 6.48 84.13; 46.59 37.53 178.26 1.7 18.04
rRNA 3DEG 1952!J:2560!K A:A rpS(sb:O2*-N3) [cSS][-] 5.44 87.72; 155.48 67.77 -21.12 1.07 39.49
rRNA 3DEG 1953!J:2559!K A:C rpS(bs:O2-O2*) [cSS][-] 5.55 160.5; 100.61 59.89 -44.08 0.34 9.1
rRNA 3DEG 1953!J:2549!K A:G rS [tSS][-] 8.11 62.96; 82.65 19.7 164.74 0.37 16.21
rRNA 3DEG 1955!J:2556!K U:C rH* [---][-] 12.51 9.85; 32.68 22.84 -44.17 0.2 45.67
rRNA 3DEG 2547!K:2561!K A:U WC [cWW][XX] 10.16 61.37; 59.07 2.3 1.78 0.03 4.03
rRNA 3DEG 2548!K:2560!K U:A WC [cWW][XX] 10.64 54.17; 53.24 0.93 -5.28 0.13 3.31
rRNA 3DEG 2549!K:2559!K G:C WC [cWW][XIX] 10.79 52.51; 53.51 1.0 -6.15 0.08 7.25
rRNA 3DEG 2550!K:2558!K G:C WC [cWW][XIX] 10.68 52.26; 54.85 2.59 0.15 0.34 9.07
rRNA 3DEG 2551!K:2557!K C:G WC [cWW][XIX] 10.88 52.13; 51.83 0.3 3.8 0.0 4.03
rRNA 3DEG 2552!K:2556!K U:C sWC [---][-] 10.82 79.25; 13.19 66.06 -20.33 0.69 19.31