Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DHS BPC Identified: 97 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNase_P_RNA 3DHS 3!A:412!A U:A WC [cWW][XX] 11.08 40.14; 44.61 4.47 -41.14 1.68 28.78
RNase_P_RNA 3DHS 4!A:411!A A:U WC [cWW][XX] 11.05 46.32; 46.67 0.35 -35.66 0.35 35.35
RNase_P_RNA 3DHS 5!A:410!A A:U WC [cWW][XX] 11.0 47.16; 47.93 0.77 -32.52 0.36 32.1
RNase_P_RNA 3DHS 6!A:409!A U:A WC [cWW][XX] 10.89 39.73; 47.41 7.68 -38.02 0.82 33.93
RNase_P_RNA 3DHS 7!A:408!A C:G WC [cWW][XIX] 10.56 43.21; 49.4 6.19 -34.8 1.35 24.19
RNase_P_RNA 3DHS 8!A:407!A A:U WC [cWW][XX] 10.67 49.9; 47.77 2.12 -29.17 1.48 20.37
RNase_P_RNA 3DHS 9!A:406!A U:A WC [cWW][XX] 10.48 47.28; 51.41 4.13 -27.44 1.34 18.66
RNase_P_RNA 3DHS 10!A:405!A G:C WC [cWW][XIX] 10.57 55.22; 54.48 0.73 3.1 0.98 7.35
RNase_P_RNA 3DHS 11!A:404!A C:G WC [cWW][XIX] 10.81 51.86; 51.9 0.05 12.26 0.71 7.29
RNase_P_RNA 3DHS 12!A:403!A U:A WC [cWW][XX] 10.79 53.0; 53.29 0.29 -0.28 0.12 9.08
RNase_P_RNA 3DHS 13!A:402!A C:G WC [cWW][XIX] 10.86 52.65; 53.04 0.39 -9.5 0.36 7.5
RNase_P_RNA 3DHS 15!A:344!A G:C WC [cWW][XIX] 10.47 52.46; 55.71 3.25 10.01 0.28 24.53
RNase_P_RNA 3DHS 16!A:343!A G:C WC [cWW][XIX] 10.68 53.49; 54.59 1.1 9.42 0.56 19.66
RNase_P_RNA 3DHS 17!A:342!A U:A WC [cWW][XX] 10.38 56.55; 56.54 0.01 -1.27 0.09 11.63
RNase_P_RNA 3DHS 18!A:341!A A:U WC [cWW][XX] 10.62 54.44; 55.46 1.03 -1.82 0.23 1.03
RNase_P_RNA 3DHS 19!A:340!A A:U WC [cWW][XX] 10.36 56.35; 58.55 2.2 -8.81 0.27 18.35
RNase_P_RNA 3DHS 20!A:339!A U:A WC [cWW][XX] 10.74 53.24; 54.16 0.91 -1.03 0.37 7.35
RNase_P_RNA 3DHS 21!A:338!A C:G WC [cWW][XIX] 10.8 53.44; 53.46 0.02 -2.52 0.07 5.0
RNase_P_RNA 3DHS 23!A:336!A C:A rpS(bs:O2-O2*) [cSS][-] 5.74 110.38; 153.1 42.72 -25.47 2.4 17.57
RNase_P_RNA 3DHS 23!A:44!A C:G WC [cWW][XIX] 10.46 55.34; 55.05 0.29 -9.62 0.05 25.5
RNase_P_RNA 3DHS 24!A:43!A U:A WC [cWW][XX] 10.2 55.83; 59.68 3.85 -9.86 0.13 16.45
RNase_P_RNA 3DHS 25!A:42!A G:U Wb [cWW][XXVIII] 10.39 41.31; 61.63 20.32 -0.2 0.46 10.39
RNase_P_RNA 3DHS 26!A:41!A C:G WC [cWW][XIX] 10.52 54.6; 55.18 0.58 -2.28 0.73 15.5
RNase_P_RNA 3DHS 27!A:40!A G:C WC [cWW][XIX] 10.65 55.23; 53.9 1.33 1.33 0.52 16.15
RNase_P_RNA 3DHS 28!A:39!A G:C WC [cWW][XIX] 10.47 53.43; 54.48 1.04 -8.2 0.62 11.57
RNase_P_RNA 3DHS 29!A:38!A C:G WC [cWW][XIX] 10.06 58.07; 54.68 3.39 -9.36 1.09 23.99
RNase_P_RNA 3DHS 30!A:37!A C:G WC [cWW][XIX] 10.92 47.44; 49.49 2.05 -20.99 0.09 26.69
RNase_P_RNA 3DHS 31!A:36!A G:C WC [cWW][XIX] 10.7 53.81; 53.38 0.43 1.98 0.11 10.64
RNase_P_RNA 3DHS 44!A:336!A G:A rS [tSS][-] 8.62 88.3; 63.31 24.99 169.36 0.6 29.54
RNase_P_RNA 3DHS 46!A:386!A G:C WC [cWW][XIX] 10.93 49.87; 48.06 1.81 -26.85 0.63 22.89
RNase_P_RNA 3DHS 46!A:48!A G:A rpS [cSS][-] 5.87 94.54; 141.5 46.96 -90.95 0.39 52.2
RNase_P_RNA 3DHS 48!A:398!A A:U rH_1 [tWH][XXIV] 10.53 17.0; 26.27 9.26 -152.78 2.01 51.2
RNase_P_RNA 3DHS 49!A:387!A A:A pS [cSH][-] 8.54 13.91; 124.81 110.9 -70.69 1.6 43.39
RNase_P_RNA 3DHS 50!A:397!A A:U WC [cWW][XX] 10.94 49.22; 49.51 0.29 -14.1 0.41 22.81
RNase_P_RNA 3DHS 51!A:396!A G:C WC [cWW][XIX] 10.75 53.25; 51.67 1.58 -18.14 0.65 27.03
RNase_P_RNA 3DHS 53!A:395!A C:G WC [cWW][XIX] 10.8 54.23; 51.73 2.5 4.69 0.12 15.63
RNase_P_RNA 3DHS 54!A:394!A C:G WC [cWW][XIX] 10.68 55.33; 55.07 0.26 4.93 0.2 8.84
RNase_P_RNA 3DHS 55!A:393!A A:U WC [cWW][XX] 10.63 54.34; 55.84 1.5 -3.53 0.16 6.24
RNase_P_RNA 3DHS 56!A:392!A U:A WC [cWW][XX] 10.72 54.68; 51.02 3.66 -2.19 0.07 18.07
RNase_P_RNA 3DHS 57!A:391!A G:C WC [cWW][XIX] 10.71 53.72; 54.59 0.88 -6.63 0.07 11.14
RNase_P_RNA 3DHS 58!A:255!A C:A S [tSH][-] 9.34 91.29; 26.63 64.66 -73.06 0.01 35.9
RNase_P_RNA 3DHS 58!A:254!A C:G WC [cWW][XIX] 10.54 54.63; 54.29 0.34 1.65 0.78 17.5
RNase_P_RNA 3DHS 59!A:253!A U:A WC [cWW][XX] 10.26 57.24; 60.09 2.85 -6.84 0.97 19.18
RNase_P_RNA 3DHS 60!A:252!A C:G WC [cWW][XIX] 10.78 53.09; 50.86 2.24 -0.92 0.27 23.45
RNase_P_RNA 3DHS 61!A:251!A G:C WC [cWW][XIX] 10.92 50.82; 50.78 0.04 -14.54 0.02 18.84
RNase_P_RNA 3DHS 62!A:250!A C:G WC [cWW][XIX] 10.92 47.46; 51.5 4.04 -14.24 0.41 23.44
RNase_P_RNA 3DHS 63!A:81!A A:U WC [cWW][XX] 10.63 53.38; 53.48 0.09 -8.94 0.78 2.76
RNase_P_RNA 3DHS 64!A:80!A C:G WC [cWW][XIX] 10.82 53.19; 52.44 0.75 -10.54 0.06 12.35
RNase_P_RNA 3DHS 65!A:79!A G:C WC [cWW][XIX] 10.52 54.92; 55.89 0.98 -9.29 0.48 19.39
RNase_P_RNA 3DHS 66!A:78!A G:C WC [cWW][XIX] 11.0 51.86; 49.07 2.78 -5.56 0.05 6.76
RNase_P_RNA 3DHS 68!A:77!A G:C WC [cWW][XIX] 10.71 52.91; 53.88 0.97 -11.23 0.42 17.99
RNase_P_RNA 3DHS 69!A:296!A C:A rpS(bs:O2-O2*) [cSS][-] 5.55 102.6; 145.47 42.88 -65.5 0.57 33.26
RNase_P_RNA 3DHS 69!A:76!A C:G WC [cWW][XIX] 10.81 52.58; 51.24 1.34 -7.22 0.14 14.67
RNase_P_RNA 3DHS 70!A:295!A U:A rpS(sb:O2*-N3) [cSS][-] 5.33 139.59; 93.67 45.92 -37.14 1.69 5.7
RNase_P_RNA 3DHS 70!A:74!A U:A rH_1 [tWH][XXIV] 10.31 34.19; 12.47 21.72 -138.62 0.42 14.18
RNase_P_RNA 3DHS 71!A:291!A G:A fS [tSW][X] 10.11 104.94; 18.78 86.16 -109.78 0.37 33.31
RNase_P_RNA 3DHS 71!A:73!A G:G S(sb:O2*-N7)_1 [---][-] 7.21 79.14; 31.14 48.0 -160.73 1.37 32.67
RNase_P_RNA 3DHS 73!A:294!A G:G rWb_o [---][-] 13.55 7.92; 52.49 44.57 93.23 0.22 32.56
RNase_P_RNA 3DHS 76!A:296!A G:A rS [tSS][-] 8.72 80.96; 61.52 19.44 165.54 0.61 18.76
RNase_P_RNA 3DHS 77!A:297!A C:C rS(ss:O2*-O2*)_1 [---][-] 5.28 157.57; 145.9 11.67 -123.11 1.03 29.93
RNase_P_RNA 3DHS 255!A:275!A A:G rS [tSS][-] 7.97 90.17; 63.64 26.53 138.73 1.02 53.85
RNase_P_RNA 3DHS 258!A:274!A C:G WC [cWW][XIX] 10.69 53.16; 53.9 0.74 1.08 0.19 18.05
RNase_P_RNA 3DHS 259!A:273!A C:G WC [cWW][XIX] 10.44 56.65; 56.91 0.26 -0.9 0.86 10.78
RNase_P_RNA 3DHS 260!A:287!A C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.78 160.32; 93.3 67.03 -148.81 0.75 44.03
RNase_P_RNA 3DHS 260!A:272!A C:G WC [cWW][XIX] 10.83 52.92; 51.89 1.03 8.02 0.22 6.58
RNase_P_RNA 3DHS 277!A:391!A A:C fS(sb:O2*-N1)_2 [---][-] 9.48 53.78; 152.55 98.77 146.98 1.92 1.24
RNase_P_RNA 3DHS 278!A:307!A C:G WC [cWW][XIX] 11.02 48.12; 52.37 4.25 -2.57 0.15 14.42
RNase_P_RNA 3DHS 279!A:306!A C:G WC [cWW][XIX] 10.75 54.99; 54.93 0.06 4.78 0.35 1.22
RNase_P_RNA 3DHS 280!A:305!A U:A WC [cWW][XX] 10.56 53.97; 57.27 3.3 9.2 0.41 7.98
RNase_P_RNA 3DHS 281!A:304!A U:A WC [cWW][XX] 10.6 55.39; 55.75 0.36 3.68 0.02 8.09
RNase_P_RNA 3DHS 282!A:303!A C:G WC [cWW][XIX] 10.84 51.8; 53.73 1.93 4.36 0.12 6.42
RNase_P_RNA 3DHS 283!A:302!A C:G WC [cWW][XIX] 10.4 58.26; 56.11 2.15 12.86 0.46 21.32
RNase_P_RNA 3DHS 284!A:301!A C:G WC [cWW][XIX] 10.62 55.25; 57.11 1.85 9.99 0.74 2.86
RNase_P_RNA 3DHS 285!A:300!A G:A S [tSH][XI] 9.53 95.19; 6.42 88.77 -98.89 0.06 25.18
RNase_P_RNA 3DHS 285!A:286!A G:A pS_2 [cSH][-] 6.41 125.62; 67.73 57.89 4.63 0.87 8.75
RNase_P_RNA 3DHS 287!A:298!A A:G S [tSH][XI] 9.95 3.81; 95.5 91.69 47.52 0.41 17.74
RNase_P_RNA 3DHS 288!A:297!A G:C WC [cWW][XIX] 10.41 57.04; 58.46 1.42 2.7 0.98 9.1
RNase_P_RNA 3DHS 289!A:296!A G:A S [tSH][XI] 10.02 90.18; 3.06 87.12 123.92 0.08 11.94
RNase_P_RNA 3DHS 291!A:295!A A:A rH [tWH][V] 12.51 15.64; 24.0 8.36 172.89 0.04 13.07
RNase_P_RNA 3DHS 308!A:329!A A:U WC [cWW][XX] 10.43 55.18; 58.2 3.02 -2.84 0.27 4.4
RNase_P_RNA 3DHS 309!A:328!A C:G WC [cWW][XIX] 10.87 52.09; 50.98 1.11 -8.63 0.25 9.01
RNase_P_RNA 3DHS 310!A:327!A A:U WC [cWW][XX] 10.6 57.14; 55.31 1.82 4.4 0.27 11.22
RNase_P_RNA 3DHS 311!A:326!A G:C WC [cWW][XIX] 10.66 55.22; 54.93 0.28 0.8 0.27 9.99
RNase_P_RNA 3DHS 312!A:325!A G:C WC [cWW][XIX] 10.76 53.31; 53.75 0.44 -0.37 0.48 8.18
RNase_P_RNA 3DHS 313!A:324!A C:G WC [cWW][XIX] 10.77 53.71; 52.94 0.76 -2.57 0.64 13.96
RNase_P_RNA 3DHS 330!A:336!A A:A pfS [cSW][-] 9.07 120.01; 37.39 82.62 -3.36 0.77 12.6
RNase_P_RNA 3DHS 331!A:390!A G:A rS [tSS][-] 8.81 75.61; 70.1 5.51 -136.63 1.82 48.41
RNase_P_RNA 3DHS 336!A:390!A A:A rH [tWH][V] 12.5 25.68; 27.23 1.55 -86.37 1.03 47.52
RNase_P_RNA 3DHS 337!A:389!A U:A rH_1 [tWH][XXIV] 10.4 26.35; 23.95 2.41 -147.92 0.77 17.7
RNase_P_RNA 3DHS 345!A:384!A G:U Wb [cWW][XXVIII] 10.52 44.36; 70.79 26.44 1.68 0.31 18.18
RNase_P_RNA 3DHS 346!A:383!A C:G WC [cWW][XIX] 10.76 53.12; 52.23 0.89 -5.38 0.43 12.11
RNase_P_RNA 3DHS 347!A:382!A C:G WC [cWW][XIX] 10.72 54.77; 53.42 1.35 -4.15 0.22 11.0
RNase_P_RNA 3DHS 348!A:381!A G:A S [tSH][XI] 10.02 94.06; 12.19 81.87 -7.83 0.35 6.79
RNase_P_RNA 3DHS 350!A:379!A A:G S(bp:N1-O2P)_1 [---][-] 9.58 12.01; 74.61 62.6 167.09 1.67 25.17
RNase_P_RNA 3DHS 351!A:378!A G:C WC [cWW][XIX] 10.2 54.34; 53.8 0.54 19.23 2.07 2.28
RNase_P_RNA 3DHS 385!A:400!A A:U rpS(sb:O2*-N3) [cSS][-] 5.85 91.56; 132.74 41.19 -55.11 0.31 42.81
RNase_P_RNA 3DHS 386!A:399!A C:A rpS(sb:O2*-N3) [cSS][-] 5.78 148.67; 91.24 57.43 -60.59 2.29 63.17