Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIG BPC Identified: 89 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIG 1!X:174!X G:C WC [cWW][XIX] 11.02 50.95; 49.58 1.37 -3.55 0.44 9.87
Riboswitch 3DIG 2!X:173!X G:U Wb [cWW][XXVIII] 10.66 40.41; 67.97 27.55 -8.2 0.02 13.2
Riboswitch 3DIG 3!X:172!X C:G WC [cWW][XIX] 10.79 51.46; 55.88 4.42 -12.25 0.3 19.92
Riboswitch 3DIG 4!X:171!X C:G WC [cWW][XIX] 10.8 50.99; 55.19 4.2 -8.34 0.12 14.9
Riboswitch 3DIG 5!X:170!X G:C WC [cWW][XIX] 10.65 51.99; 53.62 1.63 -6.56 0.14 6.84
Riboswitch 3DIG 6!X:169!X A:U WC [cWW][XX] 10.78 53.31; 51.52 1.79 -9.87 0.34 18.07
Riboswitch 3DIG 7!X:168!X C:G WC [cWW][XIX] 10.44 55.58; 55.94 0.35 -12.96 0.37 24.16
Riboswitch 3DIG 8!X:167!X G:C WC [cWW][XIX] 10.61 54.66; 54.27 0.39 -13.1 0.48 25.39
Riboswitch 3DIG 9!X:166!X G:C WC [cWW][XIX] 10.8 52.52; 53.17 0.65 -14.39 1.08 32.8
Riboswitch 3DIG 10!X:165!X A:G WC [cWW][VIII] 12.81 47.81; 47.89 0.08 -6.36 0.54 18.07
Riboswitch 3DIG 11!X:163!X G:G rH_1 [tWH][VII] 11.37 32.56; 28.32 4.24 -166.24 0.03 6.8
Riboswitch 3DIG 12!X:79!X G:C WC [cWW][XIX] 10.8 47.81; 49.68 1.86 23.93 0.02 26.08
Riboswitch 3DIG 14!X:81!X G:A rS [tSS][-] 8.06 90.09; 59.35 30.75 163.16 0.5 23.73
Riboswitch 3DIG 14!X:78!X G:C WC [cWW][XIX] 10.54 55.13; 55.49 0.37 -1.3 0.0 6.67
Riboswitch 3DIG 15!X:82!X C:A rS(ss:O2*-O2*)_2 [---][-] 5.42 151.29; 141.02 10.27 -104.38 0.92 31.68
Riboswitch 3DIG 15!X:77!X C:G WC [cWW][XIX] 10.64 54.75; 53.32 1.43 -6.16 0.02 11.93
Riboswitch 3DIG 16!X:76!X G:C WC [cWW][XIX] 10.81 53.45; 53.88 0.43 -8.06 0.0 12.58
Riboswitch 3DIG 17!X:75!X C:G WC [cWW][XIX] 10.55 53.28; 51.35 1.93 -8.5 0.12 13.31
Riboswitch 3DIG 18!X:74!X C:G WC [cWW][XIX] 10.64 56.42; 55.54 0.88 -5.02 0.18 8.72
Riboswitch 3DIG 19!X:73!X C:G WC [cWW][XIX] 10.84 54.2; 53.07 1.14 -0.85 0.03 3.17
Riboswitch 3DIG 20!X:72!X G:A S [tSH][XI] 9.25 99.84; 7.35 92.49 17.32 0.91 26.51
Riboswitch 3DIG 21!X:71!X A:G S [tSH][XI] 9.46 4.09; 94.2 90.11 -38.82 0.48 15.22
Riboswitch 3DIG 22!X:70!X G:C WC [cWW][XIX] 10.74 48.33; 51.48 3.14 -2.84 0.02 9.98
Riboswitch 3DIG 23!X:69!X A:G WC [cWW][VIII] 12.65 50.53; 47.58 2.94 -0.3 0.71 12.36
Riboswitch 3DIG 25!X:67!X G:A S [tSH][XI] 9.46 93.02; 1.66 91.35 -16.78 0.56 16.12
Riboswitch 3DIG 26!X:66!X A:A rS* [tHH][-] 11.15 10.8; 18.74 7.94 -116.37 0.45 13.92
Riboswitch 3DIG 27!X:65!X G:A S(bp:N1-O2P)_3 [---][-] 11.11 81.12; 58.46 22.66 -169.78 0.26 14.99
Riboswitch 3DIG 27!X:28!X G:U pS* [cHS][-] 6.99 141.14; 55.5 85.64 4.64 0.06 4.43
Riboswitch 3DIG 28!X:65!X U:A rH_1 [tWH][XXIV] 9.75 25.84; 20.57 5.28 -161.88 0.37 16.23
Riboswitch 3DIG 29!X:64!X A:G S [tSH][XI] 9.46 7.8; 103.55 95.74 -8.31 0.31 7.12
Riboswitch 3DIG 30!X:63!X G:U Wb [cWW][XXVIII] 10.56 37.28; 66.64 29.36 -7.2 0.19 17.96
Riboswitch 3DIG 31!X:62!X G:C WC [cWW][XIX] 10.83 50.83; 55.12 4.29 -5.83 0.68 21.55
Riboswitch 3DIG 32!X:61!X C:G WC [cWW][XIX] 11.05 53.43; 51.39 2.04 -9.94 0.07 19.15
Riboswitch 3DIG 33!X:60!X U:G Wb [cWW][XXVIII] 11.2 69.14; 43.89 25.25 -9.25 0.28 14.09
Riboswitch 3DIG 34!X:59!X G:C WC [cWW][XIX] 11.21 60.15; 50.7 9.45 -0.54 0.47 13.63
Riboswitch 3DIG 35!X:58!X U:A WC [cWW][XX] 10.86 50.8; 49.05 1.75 -2.66 0.21 9.3
Riboswitch 3DIG 36!X:57!X C:G WC [cWW][XIX] 10.47 59.35; 60.15 0.8 -11.21 0.32 18.34
Riboswitch 3DIG 37!X:56!X C:G WC [cWW][XIX] 10.59 52.05; 57.76 5.71 -3.49 0.2 2.92
Riboswitch 3DIG 38!X:55!X C:G WC [cWW][XIX] 10.92 50.18; 57.67 7.49 4.67 0.36 6.76
Riboswitch 3DIG 40!X:52!X U:U rWb [tWW][XIII] 8.71 41.89; 40.4 1.5 178.44 1.67 46.65
Riboswitch 3DIG 41!X:54!X C:G WC [cWW][XIX] 11.12 48.39; 54.15 5.77 -10.8 0.08 21.91
Riboswitch 3DIG 42!X:50!X A:A rH [tWH][V] 11.71 26.75; 26.44 0.31 108.57 1.14 31.12
Riboswitch 3DIG 44!X:100!X G:C WC [cWW][XIX] 10.75 52.78; 59.51 6.74 -6.1 0.13 11.74
Riboswitch 3DIG 45!X:99!X G:C WC [cWW][XIX] 10.6 50.25; 54.01 3.76 1.63 0.03 9.92
Riboswitch 3DIG 46!X:98!X G:C WC [cWW][XIX] 10.62 53.72; 53.48 0.24 4.38 0.01 4.1
Riboswitch 3DIG 47!X:97!X A:U WC [cWW][XX] 10.51 60.05; 57.69 2.36 0.64 0.57 13.37
Riboswitch 3DIG 48!X:96!X G:C WC [cWW][XIX] 10.85 57.98; 54.78 3.2 -4.67 0.19 8.42
Riboswitch 3DIG 49!X:95!X G:C WC [cWW][XIX] 10.94 55.03; 50.15 4.87 -12.46 0.44 26.21
Riboswitch 3DIG 68!X:126!X G:A H_1 [cWH][IX] 10.81 52.83; 41.88 10.95 34.46 0.27 42.42
Riboswitch 3DIG 69!X:129!X G:A fS(sb:O2*-N1)_1 [---][-] 9.05 105.7; 43.64 62.07 -144.09 0.94 41.74
Riboswitch 3DIG 69!X:127!X G:A fS [tSW][X] 9.77 107.19; 10.63 96.57 -113.95 1.96 46.17
Riboswitch 3DIG 78!X:81!X C:A rpS(bs:O2-O2*) [cSS][-] 6.08 104.95; 148.61 43.66 -38.21 0.46 17.3
Riboswitch 3DIG 82!X:113!X A:U WC [cWW][XX] 10.37 53.84; 55.2 1.36 3.55 0.35 13.78
Riboswitch 3DIG 83!X:112!X G:C WC [cWW][XIX] 10.45 55.65; 56.6 0.96 -5.66 0.29 9.48
Riboswitch 3DIG 84!X:111!X G:C WC [cWW][XIX] 10.56 55.7; 52.7 3.0 -2.05 0.42 9.88
Riboswitch 3DIG 85!X:109!X G:U Wb [cWW][XXVIII] 10.42 38.15; 68.17 30.02 -10.52 0.32 8.47
Riboswitch 3DIG 86!X:108!X U:A WC [cWW][XX] 10.37 55.68; 55.01 0.67 -10.86 0.24 16.0
Riboswitch 3DIG 87!X:107!X G:C WC [cWW][XIX] 10.45 52.64; 56.52 3.88 -8.5 0.18 13.28
Riboswitch 3DIG 88!X:106!X C:G WC [cWW][XIX] 10.84 54.17; 53.22 0.95 -6.94 0.12 15.5
Riboswitch 3DIG 89!X:105!X A:U WC [cWW][XX] 10.45 57.97; 55.37 2.6 -5.03 0.1 7.97
Riboswitch 3DIG 90!X:104!X G:C WC [cWW][XIX] 10.59 56.35; 55.34 1.02 -4.94 0.15 15.74
Riboswitch 3DIG 91!X:103!X A:U WC [cWW][XX] 10.45 58.09; 54.25 3.84 -6.6 0.1 12.22
Riboswitch 3DIG 92!X:102!X G:C WC [cWW][XIX] 10.65 55.4; 54.87 0.53 -11.09 0.52 26.71
Riboswitch 3DIG 93!X:101!X U:G Wb [cWW][XXVIII] 10.61 69.07; 40.83 28.25 -6.06 0.0 11.37
Riboswitch 3DIG 94!X:98!X U:C rH_2 [---][-] 13.27 10.85; 15.24 4.39 -55.46 0.22 85.17
Riboswitch 3DIG 114!X:140!X G:U Wb [cWW][XXVIII] 10.43 43.58; 63.76 20.18 -7.16 0.32 9.47
Riboswitch 3DIG 115!X:139!X G:C WC [cWW][XIX] 10.81 47.76; 52.43 4.67 -8.46 0.37 16.99
Riboswitch 3DIG 116!X:138!X G:A WC [cWW][VIII] 13.0 44.32; 45.19 0.86 -0.29 0.02 8.59
Riboswitch 3DIG 117!X:137!X G:C WC [cWW][XIX] 10.81 51.01; 54.14 3.14 -12.34 0.31 12.69
Riboswitch 3DIG 118!X:136!X G:C WC [cWW][XIX] 10.66 51.69; 55.3 3.61 -14.01 0.41 21.04
Riboswitch 3DIG 119!X:135!X U:A WC [cWW][XX] 10.53 54.33; 54.86 0.53 -12.99 0.09 16.22
Riboswitch 3DIG 120!X:134!X A:U WC [cWW][XX] 10.46 57.79; 53.83 3.96 -9.47 0.0 13.73
Riboswitch 3DIG 121!X:133!X U:A WC [cWW][XX] 10.5 56.67; 57.01 0.34 -12.37 0.09 18.22
Riboswitch 3DIG 122!X:132!X G:C WC [cWW][XIX] 10.54 57.46; 56.24 1.22 -6.27 0.06 12.97
Riboswitch 3DIG 123!X:131!X G:C WC [cWW][XIX] 10.53 57.5; 52.58 4.92 0.38 0.01 14.43
Riboswitch 3DIG 124!X:130!X G:C WC [cWW][XIX] 10.69 59.42; 54.82 4.6 -0.87 0.21 8.89
Riboswitch 3DIG 125!X:129!X G:A S [tSH][XI] 10.03 94.26; 5.25 89.01 -68.86 0.56 7.4
Riboswitch 3DIG 125!X:127!X G:A S(sb:O2*-N7) [---][-] 7.07 76.09; 35.9 40.18 -168.05 2.35 26.02
Riboswitch 3DIG 141!X:163!X G:G S_1 [tSH][-] 11.31 84.37; 5.86 78.51 25.08 0.56 11.98
Riboswitch 3DIG 141!X:162!X G:A WC [cWW][VIII] 12.6 52.69; 48.67 4.02 -17.43 0.32 31.12
Riboswitch 3DIG 142!X:166!X U:C rS(ss:O2*-O2*) [---][-] 5.47 160.74; 141.29 19.45 -126.92 0.75 33.02
Riboswitch 3DIG 142!X:161!X U:G Wb [cWW][XXVIII] 10.66 65.43; 38.87 26.55 -18.03 0.05 17.28
Riboswitch 3DIG 143!X:160!X C:G WC [cWW][XIX] 10.68 52.97; 52.07 0.9 -14.17 0.68 24.1
Riboswitch 3DIG 144!X:159!X A:U WC [cWW][XX] 10.27 52.99; 57.09 4.11 -14.52 0.09 20.68
Riboswitch 3DIG 145!X:158!X C:G WC [cWW][XIX] 10.72 52.76; 54.32 1.56 -11.27 0.21 19.43
Riboswitch 3DIG 146!X:157!X G:C WC [cWW][XIX] 10.65 53.72; 54.88 1.16 -2.73 0.04 5.21
Riboswitch 3DIG 147!X:156!X G:C WC [cWW][XIX] 10.55 55.88; 56.26 0.38 -7.73 0.12 11.97
Riboswitch 3DIG 148!X:155!X A:U WC [cWW][XX] 10.83 53.94; 52.18 1.76 -2.34 0.07 7.63
Riboswitch 3DIG 149!X:154!X G:C WC [cWW][XIX] 10.63 54.17; 53.31 0.86 -1.16 0.23 5.35