Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIL BPC Identified: 89 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIL 1!A:174!A G:C WC [cWW][XIX] 10.89 51.98; 49.19 2.79 -3.01 0.88 6.51
Riboswitch 3DIL 2!A:173!A G:U Wb [cWW][XXVIII] 10.55 39.61; 66.0 26.39 -9.85 0.06 16.31
Riboswitch 3DIL 3!A:172!A C:G WC [cWW][XIX] 10.71 54.31; 52.96 1.36 -11.5 0.28 19.9
Riboswitch 3DIL 4!A:171!A C:G WC [cWW][XIX] 10.72 53.54; 53.12 0.42 -7.95 0.35 11.28
Riboswitch 3DIL 5!A:170!A G:C WC [cWW][XIX] 10.75 52.21; 53.09 0.87 -8.13 0.2 10.61
Riboswitch 3DIL 6!A:169!A A:U WC [cWW][XX] 10.67 52.72; 55.0 2.28 -10.66 0.0 15.53
Riboswitch 3DIL 7!A:168!A C:G WC [cWW][XIX] 10.67 54.93; 54.5 0.43 -13.82 0.57 22.56
Riboswitch 3DIL 8!A:167!A G:C WC [cWW][XIX] 10.67 53.72; 53.55 0.17 -11.14 0.21 17.94
Riboswitch 3DIL 9!A:166!A G:C WC [cWW][XIX] 10.8 50.88; 51.7 0.81 -14.45 0.96 27.06
Riboswitch 3DIL 10!A:165!A A:G WC [cWW][VIII] 12.78 47.23; 46.87 0.36 -8.66 0.53 18.25
Riboswitch 3DIL 11!A:163!A G:G rH_1 [tWH][VII] 11.22 34.57; 27.66 6.91 -163.65 0.11 8.97
Riboswitch 3DIL 12!A:79!A G:C WC [cWW][XIX] 10.94 47.8; 50.9 3.1 24.71 0.73 21.8
Riboswitch 3DIL 14!A:81!A G:A rS [tSS][-] 8.18 87.02; 59.08 27.94 161.28 0.65 26.57
Riboswitch 3DIL 14!A:78!A G:C WC [cWW][XIX] 10.62 52.4; 55.66 3.26 -5.3 0.23 11.64
Riboswitch 3DIL 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.57 147.49; 139.78 7.7 -107.54 0.58 29.48
Riboswitch 3DIL 15!A:77!A C:G WC [cWW][XIX] 10.74 54.01; 53.35 0.65 -6.33 0.07 12.02
Riboswitch 3DIL 16!A:76!A G:C WC [cWW][XIX] 10.84 52.67; 52.98 0.31 -7.51 0.22 11.81
Riboswitch 3DIL 17!A:75!A C:G WC [cWW][XIX] 10.75 53.94; 51.42 2.51 -7.1 0.19 12.09
Riboswitch 3DIL 18!A:74!A C:G WC [cWW][XIX] 10.73 53.64; 53.79 0.15 -4.3 0.07 7.6
Riboswitch 3DIL 19!A:73!A C:G WC [cWW][XIX] 10.92 51.68; 52.2 0.51 -2.67 0.08 1.37
Riboswitch 3DIL 20!A:72!A G:A S [tSH][XI] 9.29 99.24; 8.19 91.05 22.81 0.68 25.11
Riboswitch 3DIL 21!A:71!A A:G S [tSH][XI] 9.52 4.31; 95.09 90.78 -30.56 0.32 11.66
Riboswitch 3DIL 22!A:70!A G:C WC [cWW][XIX] 10.84 51.72; 53.49 1.76 -1.27 0.27 5.05
Riboswitch 3DIL 23!A:69!A A:G WC [cWW][VIII] 12.88 44.78; 45.13 0.35 4.29 0.69 8.65
Riboswitch 3DIL 25!A:67!A G:A S [tSH][XI] 9.54 91.89; 0.7 91.18 49.34 0.53 16.16
Riboswitch 3DIL 26!A:66!A A:A rS* [tHH][-] 11.1 9.5; 15.4 5.91 -119.53 0.58 13.59
Riboswitch 3DIL 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.89 79.65; 63.31 16.34 -174.84 0.49 10.6
Riboswitch 3DIL 27!A:28!A G:U pS* [cHS][-] 6.86 139.86; 53.73 86.13 0.58 1.41 4.36
Riboswitch 3DIL 28!A:65!A U:A rH_1 [tWH][XXIV] 9.57 27.54; 25.0 2.53 -169.59 0.01 14.82
Riboswitch 3DIL 29!A:64!A A:G S [tSH][XI] 9.48 6.75; 97.64 90.89 0.96 0.06 5.91
Riboswitch 3DIL 30!A:63!A G:U Wb [cWW][XXVIII] 10.56 39.84; 69.76 29.92 -3.91 0.15 11.66
Riboswitch 3DIL 31!A:62!A G:C WC [cWW][XIX] 10.83 53.23; 56.97 3.75 -4.36 0.11 11.56
Riboswitch 3DIL 32!A:61!A C:G WC [cWW][XIX] 10.63 55.98; 50.63 5.35 -6.06 0.43 14.15
Riboswitch 3DIL 33!A:60!A U:G Wb [cWW][XXVIII] 10.53 69.71; 44.55 25.17 -10.46 0.29 15.58
Riboswitch 3DIL 34!A:59!A G:C WC [cWW][XIX] 10.75 52.47; 53.29 0.82 -6.53 0.35 12.36
Riboswitch 3DIL 35!A:58!A U:A WC [cWW][XX] 10.76 53.77; 50.24 3.53 -7.37 0.75 16.82
Riboswitch 3DIL 36!A:57!A C:G WC [cWW][XIX] 10.68 55.85; 57.84 1.99 -7.09 0.28 13.95
Riboswitch 3DIL 37!A:56!A C:G WC [cWW][XIX] 10.74 58.49; 54.59 3.9 -5.25 0.04 10.54
Riboswitch 3DIL 38!A:55!A C:G WC [cWW][XIX] 10.9 52.09; 51.0 1.09 2.69 0.2 3.22
Riboswitch 3DIL 39!A:41!A A:C pS* [cHS][-] 6.79 124.51; 42.23 82.28 52.83 0.1 34.99
Riboswitch 3DIL 40!A:52!A U:U rWb [tWW][XIII] 8.56 42.54; 42.99 0.45 173.17 1.36 27.82
Riboswitch 3DIL 41!A:54!A C:G WC [cWW][XIX] 10.88 48.67; 54.22 5.55 -0.37 0.96 16.2
Riboswitch 3DIL 42!A:50!A A:A rH [tWH][V] 11.85 26.19; 22.78 3.41 117.23 1.33 29.97
Riboswitch 3DIL 43!A:47!A G:A rH_2v [---][-] 13.52 22.97; 16.8 6.17 -33.57 0.85 85.73
Riboswitch 3DIL 44!A:100!A G:C WC [cWW][XIX] 10.64 54.56; 54.08 0.48 -5.41 0.01 10.85
Riboswitch 3DIL 45!A:99!A G:C WC [cWW][XIX] 10.79 51.09; 52.82 1.72 0.26 0.05 6.31
Riboswitch 3DIL 46!A:98!A G:C WC [cWW][XIX] 10.77 52.84; 52.27 0.57 -0.31 0.52 10.27
Riboswitch 3DIL 47!A:97!A A:U WC [cWW][XX] 10.53 53.99; 55.4 1.41 -3.29 0.65 15.24
Riboswitch 3DIL 48!A:96!A G:C WC [cWW][XIX] 10.71 53.25; 53.2 0.05 -7.66 0.46 16.19
Riboswitch 3DIL 49!A:95!A G:C WC [cWW][XIX] 10.61 52.63; 53.72 1.09 -11.49 1.1 24.59
Riboswitch 3DIL 68!A:126!A G:A H_1 [cWH][IX] 10.96 50.53; 39.62 10.91 31.82 0.2 42.71
Riboswitch 3DIL 69!A:127!A G:A fS [tSW][X] 9.92 105.25; 8.61 96.64 -99.87 1.86 49.47
Riboswitch 3DIL 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 6.06 105.47; 147.83 42.36 -41.08 1.36 14.94
Riboswitch 3DIL 82!A:113!A A:U WC [cWW][XX] 10.36 56.17; 56.7 0.53 3.8 0.32 6.8
Riboswitch 3DIL 83!A:112!A G:C WC [cWW][XIX] 10.63 55.67; 55.78 0.11 -1.45 0.03 5.48
Riboswitch 3DIL 84!A:111!A G:C WC [cWW][XIX] 10.64 54.51; 54.31 0.2 -2.74 0.35 8.08
Riboswitch 3DIL 85!A:109!A G:U Wb [cWW][XXVIII] 10.66 39.15; 64.11 24.95 -11.87 0.24 12.45
Riboswitch 3DIL 86!A:108!A U:A WC [cWW][XX] 10.66 53.56; 55.29 1.73 -12.11 0.12 18.29
Riboswitch 3DIL 87!A:107!A G:C WC [cWW][XIX] 10.64 52.6; 56.16 3.57 -7.83 0.21 12.52
Riboswitch 3DIL 88!A:106!A C:G WC [cWW][XIX] 10.72 53.78; 50.71 3.07 -5.46 0.13 11.14
Riboswitch 3DIL 89!A:105!A A:U WC [cWW][XX] 10.42 56.81; 55.44 1.36 -2.81 0.23 6.36
Riboswitch 3DIL 90!A:104!A G:C WC [cWW][XIX] 10.7 53.5; 54.73 1.23 -3.32 0.29 10.88
Riboswitch 3DIL 91!A:103!A A:U WC [cWW][XX] 10.54 55.62; 53.51 2.1 -6.88 0.22 11.07
Riboswitch 3DIL 92!A:102!A G:C WC [cWW][XIX] 10.71 52.96; 52.48 0.48 -10.26 1.06 24.27
Riboswitch 3DIL 93!A:101!A U:G Wb [cWW][XXVIII] 10.71 64.4; 37.56 26.84 -4.04 0.04 9.36
Riboswitch 3DIL 94!A:97!A U:U rH_1 [tWH][-] 10.72 34.84; 25.42 9.41 -61.34 1.42 70.59
Riboswitch 3DIL 114!A:140!A G:U Wb [cWW][XXVIII] 10.52 42.07; 65.15 23.08 -7.41 0.22 11.9
Riboswitch 3DIL 115!A:139!A G:C WC [cWW][XIX] 10.84 51.06; 52.67 1.61 -10.35 0.23 18.78
Riboswitch 3DIL 116!A:138!A G:A WC [cWW][VIII] 12.96 45.42; 43.68 1.74 -0.14 0.02 8.51
Riboswitch 3DIL 117!A:137!A G:C WC [cWW][XIX] 10.78 52.03; 53.94 1.91 -13.08 0.78 14.26
Riboswitch 3DIL 118!A:136!A G:C WC [cWW][XIX] 10.77 52.39; 52.73 0.34 -13.78 0.2 20.52
Riboswitch 3DIL 119!A:135!A U:A WC [cWW][XX] 10.64 54.05; 54.23 0.18 -11.62 0.15 15.84
Riboswitch 3DIL 120!A:134!A A:U WC [cWW][XX] 10.49 55.92; 54.9 1.02 -8.64 0.31 14.05
Riboswitch 3DIL 121!A:133!A U:A WC [cWW][XX] 10.49 54.26; 55.69 1.44 -9.94 0.06 13.22
Riboswitch 3DIL 122!A:132!A G:C WC [cWW][XIX] 10.57 55.91; 56.38 0.47 -7.12 0.17 11.32
Riboswitch 3DIL 123!A:131!A G:C WC [cWW][XIX] 10.67 53.87; 55.06 1.19 -1.12 0.77 14.08
Riboswitch 3DIL 124!A:130!A G:C WC [cWW][XIX] 10.7 55.51; 53.56 1.95 -2.31 0.33 12.65
Riboswitch 3DIL 125!A:129!A G:A S [tSH][XI] 9.91 94.53; 5.77 88.76 -57.17 0.37 7.56
Riboswitch 3DIL 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.01 75.76; 38.57 37.19 -169.5 2.48 23.55
Riboswitch 3DIL 141!A:163!A G:G S_1 [tSH][-] 11.27 83.37; 4.82 78.55 31.77 0.64 12.58
Riboswitch 3DIL 141!A:162!A G:A WC [cWW][VIII] 12.56 52.21; 47.24 4.97 -15.32 0.25 28.17
Riboswitch 3DIL 142!A:161!A U:G Wb [cWW][XXVIII] 10.68 63.58; 37.18 26.4 -16.11 0.17 17.3
Riboswitch 3DIL 143!A:160!A C:G WC [cWW][XIX] 10.8 51.39; 53.3 1.91 -12.72 0.86 22.93
Riboswitch 3DIL 144!A:159!A A:U WC [cWW][XX] 10.51 54.03; 53.99 0.04 -12.34 0.05 18.42
Riboswitch 3DIL 145!A:158!A C:G WC [cWW][XIX] 10.73 53.81; 53.37 0.44 -11.04 0.24 18.53
Riboswitch 3DIL 146!A:157!A G:C WC [cWW][XIX] 10.75 52.37; 52.77 0.4 -4.02 0.39 7.5
Riboswitch 3DIL 147!A:156!A G:C WC [cWW][XIX] 10.6 57.16; 56.78 0.38 -6.85 0.41 14.66
Riboswitch 3DIL 148!A:155!A A:U WC [cWW][XX] 10.81 50.9; 52.13 1.23 -1.4 0.28 4.11
Riboswitch 3DIL 149!A:154!A G:C WC [cWW][XIX] 10.79 52.26; 53.81 1.55 -2.53 0.08 7.19