Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIM BPC Identified: 91 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIM 1!A:174!A G:C WC [cWW][XIX] 11.21 52.92; 47.43 5.49 -4.06 0.7 8.12
Riboswitch 3DIM 2!A:173!A G:U Wb [cWW][XXVIII] 10.49 37.98; 68.61 30.63 -9.73 0.11 15.11
Riboswitch 3DIM 3!A:172!A C:G WC [cWW][XIX] 10.71 51.62; 56.41 4.8 -11.57 0.22 18.86
Riboswitch 3DIM 4!A:171!A C:G WC [cWW][XIX] 10.78 50.48; 54.05 3.57 -9.79 0.23 16.93
Riboswitch 3DIM 5!A:170!A G:C WC [cWW][XIX] 10.57 51.28; 54.62 3.33 -8.38 0.13 9.8
Riboswitch 3DIM 6!A:169!A A:U WC [cWW][XX] 10.66 54.45; 52.63 1.82 -8.84 0.26 16.96
Riboswitch 3DIM 7!A:168!A C:G WC [cWW][XIX] 10.66 54.35; 55.44 1.09 -15.9 0.45 25.31
Riboswitch 3DIM 8!A:167!A G:C WC [cWW][XIX] 10.52 55.38; 53.6 1.78 -15.04 0.53 25.32
Riboswitch 3DIM 9!A:166!A G:C WC [cWW][XIX] 10.76 53.83; 51.31 2.52 -14.75 1.07 35.77
Riboswitch 3DIM 10!A:165!A A:G WC [cWW][VIII] 12.66 46.54; 47.07 0.53 -6.8 0.62 20.02
Riboswitch 3DIM 11!A:163!A G:G rH_1 [tWH][VII] 11.01 37.02; 28.55 8.47 -175.46 0.14 3.93
Riboswitch 3DIM 12!A:79!A G:C WC [cWW][XIX] 10.88 47.59; 48.5 0.91 25.69 0.82 21.12
Riboswitch 3DIM 14!A:81!A G:A rS [tSS][-] 8.02 89.26; 61.91 27.34 161.41 0.51 23.74
Riboswitch 3DIM 14!A:78!A G:C WC [cWW][XIX] 10.5 54.37; 54.37 0.0 -4.7 0.11 18.39
Riboswitch 3DIM 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.39 155.78; 142.87 12.91 -108.51 0.6 26.76
Riboswitch 3DIM 15!A:77!A C:G WC [cWW][XIX] 10.56 58.0; 54.37 3.64 -9.65 0.14 17.05
Riboswitch 3DIM 16!A:76!A G:C WC [cWW][XIX] 10.54 55.29; 54.33 0.96 -11.32 0.26 12.88
Riboswitch 3DIM 17!A:75!A C:G WC [cWW][XIX] 10.66 52.17; 49.89 2.27 -10.24 0.13 15.14
Riboswitch 3DIM 18!A:74!A C:G WC [cWW][XIX] 10.68 55.15; 56.01 0.86 -6.55 0.22 9.81
Riboswitch 3DIM 19!A:73!A C:G WC [cWW][XIX] 10.84 49.85; 55.06 5.21 -2.05 0.01 0.65
Riboswitch 3DIM 20!A:72!A G:A S [tSH][XI] 9.31 100.52; 8.11 92.42 20.36 0.61 24.32
Riboswitch 3DIM 21!A:71!A A:G S [tSH][XI] 9.42 5.0; 94.24 89.24 -43.42 0.53 17.84
Riboswitch 3DIM 22!A:70!A G:C WC [cWW][XIX] 10.95 49.67; 50.84 1.17 -1.25 0.04 3.3
Riboswitch 3DIM 23!A:69!A A:G WC [cWW][VIII] 12.64 46.2; 49.73 3.53 6.35 1.02 7.17
Riboswitch 3DIM 25!A:67!A G:A S [tSH][XI] 9.47 92.82; 0.41 92.41 -115.45 0.77 21.13
Riboswitch 3DIM 26!A:66!A A:A rS* [tHH][-] 11.3 9.06; 16.38 7.32 -129.62 0.08 10.29
Riboswitch 3DIM 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 11.09 81.38; 60.46 20.92 -170.63 0.07 11.86
Riboswitch 3DIM 27!A:28!A G:U pS* [cHS][-] 7.11 140.79; 54.48 86.31 4.04 0.19 4.89
Riboswitch 3DIM 28!A:65!A U:A rH_1 [tWH][XXIV] 9.68 26.7; 21.52 5.17 -163.14 0.51 13.62
Riboswitch 3DIM 29!A:64!A A:G S [tSH][XI] 9.58 8.99; 100.66 91.67 -2.42 0.17 8.07
Riboswitch 3DIM 30!A:63!A G:U Wb [cWW][XXVIII] 10.51 36.21; 67.23 31.02 -8.62 0.09 16.79
Riboswitch 3DIM 31!A:62!A G:C WC [cWW][XIX] 10.64 52.02; 57.2 5.17 -2.87 0.5 11.41
Riboswitch 3DIM 32!A:61!A C:G WC [cWW][XIX] 10.78 52.6; 52.31 0.29 -8.11 0.24 17.69
Riboswitch 3DIM 33!A:60!A U:G Wb [cWW][XXVIII] 11.0 73.12; 42.12 30.99 -6.78 0.28 13.38
Riboswitch 3DIM 34!A:59!A G:C WC [cWW][XIX] 10.79 58.36; 56.48 1.88 -0.22 0.61 15.22
Riboswitch 3DIM 35!A:58!A U:A WC [cWW][XX] 10.77 53.28; 49.74 3.55 -2.36 0.24 6.41
Riboswitch 3DIM 36!A:57!A C:G WC [cWW][XIX] 10.47 61.22; 57.11 4.11 -9.13 0.38 16.5
Riboswitch 3DIM 37!A:56!A C:G WC [cWW][XIX] 10.68 52.59; 59.61 7.02 -9.38 0.03 11.48
Riboswitch 3DIM 38!A:55!A C:G WC [cWW][XIX] 10.86 50.09; 52.77 2.67 6.48 0.25 5.62
Riboswitch 3DIM 39!A:41!A A:C pS* [cHS][-] 6.93 119.54; 41.71 77.83 55.95 0.35 40.76
Riboswitch 3DIM 40!A:52!A U:U rWb [tWW][XIII] 8.81 39.99; 39.48 0.52 177.21 0.82 24.18
Riboswitch 3DIM 41!A:54!A C:G WC [cWW][XIX] 10.91 49.49; 51.73 2.24 -1.39 0.68 20.03
Riboswitch 3DIM 42!A:50!A A:A rH [tWH][V] 11.76 26.96; 23.88 3.08 110.87 1.38 30.77
Riboswitch 3DIM 43!A:47!A G:A rH_2v [---][-] 13.6 20.91; 10.41 10.49 -46.18 1.22 79.17
Riboswitch 3DIM 44!A:100!A G:C WC [cWW][XIX] 10.54 52.21; 60.94 8.74 -6.48 0.12 13.13
Riboswitch 3DIM 45!A:99!A G:C WC [cWW][XIX] 10.65 51.14; 52.86 1.71 -4.21 0.12 12.75
Riboswitch 3DIM 46!A:98!A G:C WC [cWW][XIX] 10.83 52.64; 50.63 2.01 -1.17 0.06 2.31
Riboswitch 3DIM 47!A:97!A A:U WC [cWW][XX] 10.31 59.21; 56.76 2.45 1.39 0.27 17.61
Riboswitch 3DIM 48!A:96!A G:C WC [cWW][XIX] 10.97 55.98; 56.35 0.37 -4.68 0.35 14.5
Riboswitch 3DIM 49!A:95!A G:C WC [cWW][XIX] 10.78 54.62; 50.76 3.86 -11.84 0.62 27.76
Riboswitch 3DIM 68!A:126!A G:A H_1 [cWH][IX] 10.95 51.95; 40.26 11.69 34.07 0.26 43.73
Riboswitch 3DIM 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 8.94 109.15; 43.11 66.04 -140.48 0.43 46.62
Riboswitch 3DIM 69!A:127!A G:A fS [tSW][X] 9.84 106.2; 11.19 95.01 -102.47 2.43 56.03
Riboswitch 3DIM 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 6.04 103.52; 149.98 46.47 -45.52 2.16 8.24
Riboswitch 3DIM 82!A:113!A A:U WC [cWW][XX] 10.32 53.39; 55.46 2.07 2.08 0.45 16.53
Riboswitch 3DIM 83!A:112!A G:C WC [cWW][XIX] 10.39 56.85; 56.2 0.65 -0.11 0.36 10.13
Riboswitch 3DIM 84!A:111!A G:C WC [cWW][XIX] 10.48 55.37; 53.91 1.46 -3.16 0.63 13.47
Riboswitch 3DIM 85!A:109!A G:U Wb [cWW][XXVIII] 10.41 37.22; 68.72 31.5 -9.32 0.11 9.3
Riboswitch 3DIM 86!A:108!A U:A WC [cWW][XX] 10.33 55.69; 56.69 1.01 -10.68 0.02 15.21
Riboswitch 3DIM 87!A:107!A G:C WC [cWW][XIX] 10.57 56.06; 54.89 1.17 -8.87 0.07 13.36
Riboswitch 3DIM 88!A:106!A C:G WC [cWW][XIX] 10.77 54.72; 53.55 1.17 -7.93 0.25 15.76
Riboswitch 3DIM 89!A:105!A A:U WC [cWW][XX] 10.32 60.2; 55.92 4.28 -3.38 0.0 7.0
Riboswitch 3DIM 90!A:104!A G:C WC [cWW][XIX] 10.54 55.75; 57.28 1.54 -4.23 0.21 13.45
Riboswitch 3DIM 91!A:103!A A:U WC [cWW][XX] 10.52 56.26; 53.6 2.66 -9.32 0.1 18.36
Riboswitch 3DIM 92!A:102!A G:C WC [cWW][XIX] 10.59 53.86; 53.53 0.32 -12.91 0.57 25.1
Riboswitch 3DIM 93!A:101!A U:G Wb [cWW][XXVIII] 10.61 68.86; 40.1 28.76 -6.07 0.08 8.22
Riboswitch 3DIM 94!A:98!A U:C rH_2 [---][-] 13.2 10.31; 17.91 7.6 -50.94 0.1 81.29
Riboswitch 3DIM 114!A:140!A G:U Wb [cWW][XXVIII] 10.53 41.75; 65.21 23.46 -3.45 0.16 8.23
Riboswitch 3DIM 115!A:139!A G:C WC [cWW][XIX] 10.85 48.85; 53.95 5.1 -9.5 0.38 17.52
Riboswitch 3DIM 116!A:138!A G:A WC [cWW][VIII] 12.82 44.09; 46.95 2.86 -0.74 0.04 6.53
Riboswitch 3DIM 117!A:137!A G:C WC [cWW][XIX] 10.76 49.52; 54.6 5.07 -13.13 0.23 14.73
Riboswitch 3DIM 118!A:136!A G:C WC [cWW][XIX] 10.5 52.05; 57.93 5.88 -18.45 0.36 26.27
Riboswitch 3DIM 119!A:135!A U:A WC [cWW][XX] 10.63 51.57; 54.82 3.26 -13.95 0.0 21.2
Riboswitch 3DIM 120!A:134!A A:U WC [cWW][XX] 10.4 56.75; 55.03 1.72 -10.88 0.08 16.32
Riboswitch 3DIM 121!A:133!A U:A WC [cWW][XX] 10.31 57.9; 59.15 1.26 -13.68 0.24 19.58
Riboswitch 3DIM 122!A:132!A G:C WC [cWW][XIX] 10.5 59.77; 56.27 3.5 -6.84 0.1 18.48
Riboswitch 3DIM 123!A:131!A G:C WC [cWW][XIX] 10.37 58.26; 56.65 1.6 0.5 0.09 13.99
Riboswitch 3DIM 124!A:130!A G:C WC [cWW][XIX] 10.59 59.83; 58.78 1.05 -4.1 0.43 13.03
Riboswitch 3DIM 125!A:129!A G:A S [tSH][XI] 9.97 96.99; 5.96 91.03 -79.82 0.54 8.24
Riboswitch 3DIM 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.11 78.08; 35.79 42.29 -170.74 2.48 26.95
Riboswitch 3DIM 141!A:163!A G:G S_1 [tSH][-] 11.09 84.34; 5.62 78.72 11.56 0.22 10.03
Riboswitch 3DIM 141!A:162!A G:A WC [cWW][VIII] 12.62 52.64; 49.42 3.22 -17.41 0.38 31.59
Riboswitch 3DIM 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.45 158.53; 140.07 18.46 -134.28 0.2 32.08
Riboswitch 3DIM 142!A:161!A U:G Wb [cWW][XXVIII] 10.67 66.1; 39.16 26.94 -16.26 0.09 19.08
Riboswitch 3DIM 143!A:160!A C:G WC [cWW][XIX] 10.73 51.02; 51.24 0.23 -16.5 0.51 25.1
Riboswitch 3DIM 144!A:159!A A:U WC [cWW][XX] 10.03 58.69; 58.95 0.26 -16.77 0.11 21.63
Riboswitch 3DIM 145!A:158!A C:G WC [cWW][XIX] 10.78 53.51; 52.38 1.13 -12.2 0.26 18.74
Riboswitch 3DIM 146!A:157!A G:C WC [cWW][XIX] 10.65 52.45; 56.65 4.2 -3.94 0.03 6.99
Riboswitch 3DIM 147!A:156!A G:C WC [cWW][XIX] 10.5 54.49; 55.41 0.92 -9.14 0.21 13.25
Riboswitch 3DIM 148!A:155!A A:U WC [cWW][XX] 10.78 54.37; 51.44 2.93 -2.44 0.03 8.17
Riboswitch 3DIM 149!A:154!A G:C WC [cWW][XIX] 10.62 51.76; 56.18 4.42 0.12 0.11 2.12