Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIO BPC Identified: 89 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswtich 3DIO 1!X:174!X G:C WC [cWW][XIX] 10.92 52.13; 48.01 4.12 -9.75 0.36 12.8
Riboswtich 3DIO 2!X:173!X G:U Wb [cWW][XXVIII] 10.53 40.01; 67.37 27.36 -12.61 0.11 19.05
Riboswtich 3DIO 3!X:172!X C:G WC [cWW][XIX] 10.63 55.63; 54.21 1.43 -16.78 0.37 24.44
Riboswtich 3DIO 4!X:171!X C:G WC [cWW][XIX] 10.8 52.96; 52.55 0.41 -10.57 0.05 14.68
Riboswtich 3DIO 5!X:170!X G:C WC [cWW][XIX] 10.77 55.5; 52.23 3.27 -10.44 0.23 11.47
Riboswtich 3DIO 6!X:169!X A:U WC [cWW][XX] 10.67 53.38; 55.44 2.06 -12.49 0.2 17.43
Riboswtich 3DIO 7!X:168!X C:G WC [cWW][XIX] 10.55 53.05; 53.52 0.47 -14.39 0.51 25.74
Riboswtich 3DIO 8!X:167!X G:C WC [cWW][XIX] 10.57 53.98; 54.69 0.71 -12.84 0.32 20.58
Riboswtich 3DIO 9!X:166!X G:C WC [cWW][XIX] 10.88 50.02; 52.96 2.94 -13.34 0.88 25.28
Riboswtich 3DIO 10!X:165!X A:G WC [cWW][VIII] 12.84 47.59; 47.64 0.05 -8.32 0.59 18.03
Riboswtich 3DIO 11!X:163!X G:G rH_1 [tWH][VII] 11.21 34.31; 27.78 6.53 -165.66 0.05 7.44
Riboswtich 3DIO 12!X:79!X G:C WC [cWW][XIX] 10.93 47.15; 48.91 1.76 25.04 0.14 23.22
Riboswtich 3DIO 14!X:81!X G:A rS [tSS][-] 8.07 87.6; 59.47 28.13 158.85 0.67 27.78
Riboswtich 3DIO 14!X:78!X G:C WC [cWW][XIX] 10.49 51.65; 55.0 3.36 -7.14 0.05 12.5
Riboswtich 3DIO 15!X:82!X C:A rS(ss:O2*-O2*)_2 [---][-] 5.5 148.34; 139.76 8.58 -106.14 0.54 28.47
Riboswtich 3DIO 15!X:77!X C:G WC [cWW][XIX] 10.62 53.99; 54.33 0.34 -7.43 0.23 14.82
Riboswtich 3DIO 16!X:76!X G:C WC [cWW][XIX] 10.85 52.5; 53.47 0.97 -7.32 0.06 11.57
Riboswtich 3DIO 17!X:75!X C:G WC [cWW][XIX] 10.67 53.0; 49.93 3.08 -6.21 0.11 11.24
Riboswtich 3DIO 18!X:74!X C:G WC [cWW][XIX] 10.73 54.43; 53.41 1.03 -7.61 0.24 11.77
Riboswtich 3DIO 19!X:73!X C:G WC [cWW][XIX] 10.8 51.65; 50.51 1.14 -2.72 0.04 2.44
Riboswtich 3DIO 20!X:72!X G:A S [tSH][XI] 9.2 98.85; 7.64 91.2 16.37 1.08 30.89
Riboswtich 3DIO 21!X:71!X A:G S [tSH][XI] 9.46 4.74; 94.96 90.21 -26.91 0.19 11.54
Riboswtich 3DIO 22!X:70!X G:C WC [cWW][XIX] 10.89 50.39; 52.88 2.49 -0.68 0.23 5.86
Riboswtich 3DIO 23!X:69!X A:G WC [cWW][VIII] 12.87 46.21; 44.78 1.43 -0.51 0.76 14.15
Riboswtich 3DIO 25!X:67!X G:A S [tSH][XI] 9.5 92.59; 0.21 92.38 45.84 0.75 14.83
Riboswtich 3DIO 26!X:66!X A:A rS* [tHH][-] 11.08 9.05; 16.08 7.03 -115.86 0.63 15.66
Riboswtich 3DIO 27!X:65!X G:A S(bp:N1-O2P)_3 [---][-] 10.95 78.99; 63.04 15.95 -171.54 0.32 14.23
Riboswtich 3DIO 27!X:28!X G:U pS* [cHS][-] 6.85 138.38; 56.19 82.19 2.85 0.04 5.07
Riboswtich 3DIO 28!X:65!X U:A rH_1 [tWH][XXIV] 9.52 26.05; 25.17 0.88 -166.05 0.54 18.07
Riboswtich 3DIO 29!X:64!X A:G S [tSH][XI] 9.63 7.27; 94.94 87.67 12.47 0.24 5.3
Riboswtich 3DIO 30!X:63!X G:U Wb [cWW][XXVIII] 10.47 46.08; 65.6 19.53 -6.4 0.18 13.04
Riboswtich 3DIO 31!X:62!X G:C WC [cWW][XIX] 10.66 56.86; 59.35 2.49 -3.78 0.4 12.16
Riboswtich 3DIO 32!X:61!X C:G WC [cWW][XIX] 10.36 59.95; 53.79 6.16 -5.8 0.41 14.27
Riboswtich 3DIO 33!X:60!X U:G Wb [cWW][XXVIII] 10.7 66.6; 35.08 31.52 1.54 0.37 5.06
Riboswtich 3DIO 34!X:59!X G:C WC [cWW][XIX] 10.77 51.42; 52.08 0.66 -4.64 0.38 13.75
Riboswtich 3DIO 35!X:58!X U:A WC [cWW][XX] 11.17 50.46; 45.72 4.74 -2.2 0.21 7.6
Riboswtich 3DIO 37!X:56!X C:G WC [cWW][XIX] 10.72 57.59; 55.55 2.04 -4.01 0.51 11.65
Riboswtich 3DIO 38!X:55!X C:G WC [cWW][XIX] 10.82 57.42; 55.43 1.99 6.48 0.34 13.3
Riboswtich 3DIO 40!X:52!X U:U rWb [tWW][XIII] 8.55 39.72; 44.6 4.87 173.8 0.82 20.36
Riboswtich 3DIO 41!X:54!X C:G WC [cWW][XIX] 10.94 46.04; 53.76 7.72 0.14 0.38 15.15
Riboswtich 3DIO 42!X:50!X A:A rH [tWH][V] 11.87 26.67; 27.27 0.6 117.99 1.3 31.72
Riboswtich 3DIO 43!X:47!X G:A rH_2v [---][-] 13.52 21.72; 18.29 3.42 -29.83 1.06 85.84
Riboswtich 3DIO 44!X:100!X G:C WC [cWW][XIX] 10.66 54.31; 56.2 1.89 -4.34 0.11 9.75
Riboswtich 3DIO 45!X:99!X G:C WC [cWW][XIX] 10.72 51.22; 54.97 3.76 -1.1 0.17 11.28
Riboswtich 3DIO 46!X:98!X G:C WC [cWW][XIX] 10.67 52.67; 52.28 0.39 -0.34 0.08 9.95
Riboswtich 3DIO 47!X:97!X A:U WC [cWW][XX] 10.75 53.64; 52.17 1.48 -2.94 0.54 16.72
Riboswtich 3DIO 48!X:96!X G:C WC [cWW][XIX] 10.7 55.34; 53.45 1.89 -10.07 0.34 16.4
Riboswtich 3DIO 49!X:95!X G:C WC [cWW][XIX] 10.62 54.89; 55.02 0.12 -15.76 0.78 27.79
Riboswtich 3DIO 68!X:126!X G:A H_1 [cWH][IX] 10.78 50.18; 40.12 10.05 29.18 0.25 37.65
Riboswtich 3DIO 69!X:129!X G:A fS(sb:O2*-N1)_1 [---][-] 8.98 103.18; 45.52 57.65 -144.92 0.76 43.27
Riboswtich 3DIO 69!X:127!X G:A fS [tSW][X] 9.91 105.47; 8.86 96.61 -100.87 1.71 47.38
Riboswtich 3DIO 78!X:81!X C:A rpS(bs:O2-O2*) [cSS][-] 6.18 104.77; 146.15 41.38 -42.67 1.04 15.28
Riboswtich 3DIO 82!X:113!X A:U WC [cWW][XX] 10.54 55.86; 57.63 1.77 4.21 0.26 7.73
Riboswtich 3DIO 83!X:112!X G:C WC [cWW][XIX] 10.64 55.34; 56.64 1.3 -3.88 0.16 8.08
Riboswtich 3DIO 84!X:111!X G:C WC [cWW][XIX] 10.59 55.01; 55.29 0.28 -3.43 0.13 9.42
Riboswtich 3DIO 85!X:109!X G:U Wb [cWW][XXVIII] 10.57 39.76; 63.5 23.73 -10.37 0.18 9.81
Riboswtich 3DIO 86!X:108!X U:A WC [cWW][XX] 10.59 53.13; 55.69 2.56 -12.34 0.07 16.41
Riboswtich 3DIO 87!X:107!X G:C WC [cWW][XIX] 10.68 52.13; 55.86 3.73 -9.24 0.03 15.03
Riboswtich 3DIO 88!X:106!X C:G WC [cWW][XIX] 10.8 51.89; 50.91 0.98 -8.01 0.02 13.09
Riboswtich 3DIO 89!X:105!X A:U WC [cWW][XX] 10.47 57.22; 57.01 0.2 -5.14 0.02 8.9
Riboswtich 3DIO 90!X:104!X G:C WC [cWW][XIX] 10.64 55.05; 55.28 0.23 -4.46 0.1 10.73
Riboswtich 3DIO 91!X:103!X A:U WC [cWW][XX] 10.61 53.98; 53.57 0.41 -8.82 0.21 15.68
Riboswtich 3DIO 92!X:102!X G:C WC [cWW][XIX] 10.82 53.87; 52.44 1.43 -10.53 0.44 25.41
Riboswtich 3DIO 93!X:101!X U:G Wb [cWW][XXVIII] 10.66 65.14; 38.65 26.49 -2.64 0.22 8.51
Riboswtich 3DIO 94!X:98!X U:C rH_2 [---][-] 12.9 11.94; 16.19 4.24 -63.96 0.58 71.75
Riboswtich 3DIO 114!X:140!X G:U Wb [cWW][XXVIII] 10.42 41.78; 64.11 22.33 -10.23 0.34 14.87
Riboswtich 3DIO 115!X:139!X G:C WC [cWW][XIX] 10.89 50.48; 49.98 0.5 -10.68 0.42 20.37
Riboswtich 3DIO 116!X:138!X G:A WC [cWW][VIII] 13.02 44.39; 41.4 2.99 -0.29 0.15 8.19
Riboswtich 3DIO 117!X:137!X G:C WC [cWW][XIX] 10.81 53.95; 53.52 0.43 -12.49 0.16 12.99
Riboswtich 3DIO 118!X:136!X G:C WC [cWW][XIX] 10.57 52.92; 55.17 2.25 -12.45 0.19 17.1
Riboswtich 3DIO 119!X:135!X U:A WC [cWW][XX] 10.61 53.04; 52.65 0.4 -12.36 0.12 19.15
Riboswtich 3DIO 120!X:134!X A:U WC [cWW][XX] 10.67 54.58; 52.72 1.86 -9.57 0.32 15.26
Riboswtich 3DIO 121!X:133!X U:A WC [cWW][XX] 10.52 53.84; 56.14 2.31 -10.49 0.15 15.84
Riboswtich 3DIO 122!X:132!X G:C WC [cWW][XIX] 10.59 54.15; 55.65 1.5 -4.57 0.18 10.13
Riboswtich 3DIO 123!X:131!X G:C WC [cWW][XIX] 10.71 53.54; 55.26 1.73 -2.98 0.24 15.66
Riboswtich 3DIO 124!X:130!X G:C WC [cWW][XIX] 10.61 56.83; 54.0 2.84 -3.15 0.74 15.91
Riboswtich 3DIO 125!X:129!X G:A S [tSH][XI] 9.84 94.69; 7.41 87.27 -62.19 0.64 6.82
Riboswtich 3DIO 125!X:127!X G:A S(sb:O2*-N7) [---][-] 7.0 75.45; 37.78 37.66 -168.52 2.27 23.06
Riboswtich 3DIO 141!X:163!X G:G S_1 [tSH][-] 11.23 83.71; 4.96 78.75 15.87 0.59 11.36
Riboswtich 3DIO 141!X:162!X G:A WC [cWW][VIII] 12.54 52.11; 48.25 3.86 -12.17 0.33 24.97
Riboswtich 3DIO 142!X:166!X U:C rS(ss:O2*-O2*) [---][-] 5.47 162.13; 141.22 20.91 -126.67 0.51 34.78
Riboswtich 3DIO 142!X:161!X U:G Wb [cWW][XXVIII] 10.65 66.53; 37.87 28.66 -14.07 0.59 18.65
Riboswtich 3DIO 143!X:160!X C:G WC [cWW][XIX] 10.75 50.33; 53.2 2.87 -12.93 0.66 23.32
Riboswtich 3DIO 144!X:159!X A:U WC [cWW][XX] 10.45 55.6; 55.49 0.11 -13.27 0.05 17.52
Riboswtich 3DIO 145!X:158!X C:G WC [cWW][XIX] 10.63 53.79; 53.03 0.76 -9.52 0.21 17.62
Riboswtich 3DIO 146!X:157!X G:C WC [cWW][XIX] 10.59 53.68; 51.32 2.36 -4.97 0.14 7.26
Riboswtich 3DIO 147!X:156!X G:C WC [cWW][XIX] 10.54 56.11; 55.44 0.67 -5.85 0.32 14.53
Riboswtich 3DIO 148!X:155!X A:U WC [cWW][XX] 10.8 52.24; 52.58 0.33 -3.01 0.09 5.06
Riboswtich 3DIO 149!X:154!X G:C WC [cWW][XIX] 10.8 53.47; 50.54 2.93 -4.91 0.01 9.59