Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIQ BPC Identified: 91 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIQ 1!A:174!A G:C WC [cWW][XIX] 10.83 53.56; 48.08 5.48 -2.5 0.72 3.92
Riboswitch 3DIQ 2!A:173!A G:U Wb [cWW][XXVIII] 10.48 39.97; 67.19 27.22 -13.72 0.2 18.59
Riboswitch 3DIQ 3!A:172!A C:G WC [cWW][XIX] 10.57 54.8; 54.08 0.72 -12.85 0.11 19.85
Riboswitch 3DIQ 4!A:171!A C:G WC [cWW][XIX] 10.71 52.37; 54.26 1.89 -8.62 0.11 11.47
Riboswitch 3DIQ 5!A:170!A G:C WC [cWW][XIX] 10.71 54.41; 52.34 2.07 -7.22 0.09 10.25
Riboswitch 3DIQ 6!A:169!A A:U WC [cWW][XX] 10.6 57.19; 54.36 2.83 -8.66 0.41 14.27
Riboswitch 3DIQ 7!A:168!A C:G WC [cWW][XIX] 10.63 54.29; 52.77 1.51 -14.29 0.38 24.4
Riboswitch 3DIQ 8!A:167!A G:C WC [cWW][XIX] 10.53 52.92; 53.33 0.42 -13.02 0.43 22.37
Riboswitch 3DIQ 9!A:166!A G:C WC [cWW][XIX] 10.69 53.41; 53.11 0.3 -17.24 0.91 31.67
Riboswitch 3DIQ 10!A:165!A A:G WC [cWW][VIII] 12.71 46.78; 46.24 0.55 -9.93 0.46 18.67
Riboswitch 3DIQ 11!A:163!A G:G rH_1 [tWH][VII] 11.25 33.63; 27.1 6.53 -164.86 0.25 6.54
Riboswitch 3DIQ 12!A:79!A G:C WC [cWW][XIX] 10.88 48.77; 48.59 0.19 26.95 0.29 27.19
Riboswitch 3DIQ 14!A:81!A G:A rS [tSS][-] 8.05 88.8; 60.84 27.96 162.78 0.55 22.49
Riboswitch 3DIQ 14!A:78!A G:C WC [cWW][XIX] 10.42 54.08; 55.48 1.41 -5.35 0.18 10.51
Riboswitch 3DIQ 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.53 150.84; 141.15 9.69 -104.42 0.8 30.02
Riboswitch 3DIQ 15!A:77!A C:G WC [cWW][XIX] 10.62 55.67; 52.16 3.5 -7.11 0.2 12.54
Riboswitch 3DIQ 16!A:76!A G:C WC [cWW][XIX] 10.64 51.0; 53.9 2.9 -7.56 0.09 13.97
Riboswitch 3DIQ 17!A:75!A C:G WC [cWW][XIX] 10.62 52.45; 49.83 2.61 -8.3 0.15 11.95
Riboswitch 3DIQ 18!A:74!A C:G WC [cWW][XIX] 10.62 52.96; 53.2 0.24 -3.52 0.24 8.16
Riboswitch 3DIQ 19!A:73!A C:G WC [cWW][XIX] 10.9 47.95; 53.63 5.69 -1.18 0.01 1.53
Riboswitch 3DIQ 20!A:72!A G:A S [tSH][XI] 9.19 98.96; 7.62 91.34 25.69 0.53 24.62
Riboswitch 3DIQ 21!A:71!A A:G S [tSH][XI] 9.42 4.38; 95.43 91.05 -22.68 0.19 10.72
Riboswitch 3DIQ 22!A:70!A G:C WC [cWW][XIX] 10.87 51.37; 54.36 2.98 0.69 0.03 3.1
Riboswitch 3DIQ 23!A:69!A A:G WC [cWW][VIII] 12.88 47.37; 45.39 1.97 3.32 0.91 10.66
Riboswitch 3DIQ 25!A:67!A G:A S [tSH][XI] 9.46 91.95; 0.58 91.37 95.27 0.52 18.08
Riboswitch 3DIQ 26!A:66!A A:A rS* [tHH][-] 11.11 9.52; 16.13 6.61 -124.75 0.24 11.79
Riboswitch 3DIQ 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.82 80.53; 60.47 20.06 -173.66 0.46 12.96
Riboswitch 3DIQ 27!A:28!A G:U pS* [cHS][-] 6.69 143.04; 55.18 87.86 0.3 0.11 0.71
Riboswitch 3DIQ 28!A:65!A U:A rH_1 [tWH][XXIV] 9.75 24.83; 23.33 1.51 -165.71 0.27 13.24
Riboswitch 3DIQ 29!A:64!A A:G S [tSH][XI] 9.43 8.65; 98.32 89.67 -6.15 0.23 5.81
Riboswitch 3DIQ 30!A:63!A G:U Wb [cWW][XXVIII] 10.63 34.96; 68.23 33.27 -4.1 0.28 12.52
Riboswitch 3DIQ 31!A:62!A G:C WC [cWW][XIX] 10.78 55.48; 54.41 1.07 -5.6 0.44 12.76
Riboswitch 3DIQ 32!A:61!A C:G WC [cWW][XIX] 10.63 55.1; 49.58 5.52 -5.16 0.03 15.59
Riboswitch 3DIQ 33!A:60!A U:G Wb [cWW][XXVIII] 10.5 69.92; 46.93 23.0 -7.97 0.01 12.13
Riboswitch 3DIQ 34!A:59!A G:C WC [cWW][XIX] 10.67 51.77; 55.56 3.79 -4.07 0.26 9.03
Riboswitch 3DIQ 35!A:58!A U:A WC [cWW][XX] 10.97 50.62; 53.04 2.42 -3.82 0.23 8.95
Riboswitch 3DIQ 36!A:57!A C:G WC [cWW][XIX] 10.95 52.37; 54.45 2.09 -6.23 0.29 13.69
Riboswitch 3DIQ 37!A:56!A C:G WC [cWW][XIX] 11.01 53.02; 55.26 2.24 -3.44 0.15 8.24
Riboswitch 3DIQ 38!A:55!A C:G WC [cWW][XIX] 10.98 49.57; 52.1 2.53 2.28 0.2 5.64
Riboswitch 3DIQ 39!A:41!A A:C pS* [cHS][-] 6.82 122.15; 44.44 77.71 49.37 0.73 33.91
Riboswitch 3DIQ 40!A:52!A U:U rWb [tWW][XIII] 8.98 37.59; 35.79 1.8 178.87 0.54 13.3
Riboswitch 3DIQ 41!A:54!A C:G WC [cWW][XIX] 10.85 49.5; 51.88 2.39 -1.56 0.43 15.27
Riboswitch 3DIQ 42!A:50!A A:A rH [tWH][V] 11.81 25.83; 23.71 2.12 126.41 1.21 26.39
Riboswitch 3DIQ 43!A:47!A G:A rH_2v [---][-] 13.47 22.73; 16.31 6.42 -28.18 0.96 87.15
Riboswitch 3DIQ 44!A:100!A G:C WC [cWW][XIX] 10.64 53.55; 55.98 2.43 -8.07 0.11 13.42
Riboswitch 3DIQ 45!A:99!A G:C WC [cWW][XIX] 10.65 50.12; 54.29 4.17 -0.88 0.14 8.16
Riboswitch 3DIQ 46!A:98!A G:C WC [cWW][XIX] 10.64 52.31; 53.77 1.46 1.35 0.05 5.29
Riboswitch 3DIQ 47!A:97!A A:U WC [cWW][XX] 10.55 56.33; 53.61 2.72 -2.86 0.53 16.27
Riboswitch 3DIQ 48!A:96!A G:C WC [cWW][XIX] 10.65 52.06; 55.14 3.08 -7.74 0.48 16.14
Riboswitch 3DIQ 49!A:95!A G:C WC [cWW][XIX] 10.66 51.98; 55.01 3.02 -14.9 0.76 25.0
Riboswitch 3DIQ 68!A:126!A G:A H_1 [cWH][IX] 10.9 50.37; 40.37 10.0 31.32 0.02 41.52
Riboswitch 3DIQ 69!A:129!A G:A rS(sb:O2*-N1)_2 [---][-] 8.99 104.48; 43.53 60.95 -143.54 0.57 42.88
Riboswitch 3DIQ 69!A:127!A G:A fS [tSW][X] 9.82 105.72; 9.94 95.79 -88.08 1.52 47.74
Riboswitch 3DIQ 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 5.96 105.63; 150.62 45.0 -37.45 0.78 12.04
Riboswitch 3DIQ 82!A:113!A A:U WC [cWW][XX] 10.29 55.81; 58.08 2.27 2.92 0.33 12.28
Riboswitch 3DIQ 83!A:112!A G:C WC [cWW][XIX] 10.44 53.97; 57.89 3.92 -3.75 0.09 8.08
Riboswitch 3DIQ 84!A:111!A G:C WC [cWW][XIX] 10.66 54.93; 53.34 1.6 -2.56 0.22 8.08
Riboswitch 3DIQ 85!A:109!A G:U Wb [cWW][XXVIII] 10.5 38.85; 65.61 26.76 -10.77 0.23 12.37
Riboswitch 3DIQ 86!A:108!A U:A WC [cWW][XX] 10.55 52.43; 52.77 0.34 -12.99 0.06 17.34
Riboswitch 3DIQ 87!A:107!A G:C WC [cWW][XIX] 10.49 52.34; 56.18 3.83 -7.93 0.05 15.75
Riboswitch 3DIQ 88!A:106!A C:G WC [cWW][XIX] 10.61 54.99; 49.72 5.27 -4.04 0.09 9.8
Riboswitch 3DIQ 89!A:105!A A:U WC [cWW][XX] 10.32 59.79; 56.55 3.24 -2.58 0.03 5.9
Riboswitch 3DIQ 90!A:104!A G:C WC [cWW][XIX] 10.48 55.49; 54.55 0.94 -4.2 0.22 11.93
Riboswitch 3DIQ 91!A:103!A A:U WC [cWW][XX] 10.26 57.3; 54.43 2.87 -9.04 0.23 13.83
Riboswitch 3DIQ 92!A:102!A G:C WC [cWW][XIX] 10.69 54.62; 49.71 4.91 -8.47 0.45 24.33
Riboswitch 3DIQ 93!A:101!A U:G Wb [cWW][XXVIII] 10.64 64.95; 41.09 23.87 -4.94 0.27 11.36
Riboswitch 3DIQ 94!A:98!A U:C rH_2 [---][-] 12.98 11.99; 13.98 1.99 -70.81 0.3 76.82
Riboswitch 3DIQ 114!A:140!A G:U Wb [cWW][XXVIII] 10.41 41.23; 65.82 24.59 -8.26 0.33 12.23
Riboswitch 3DIQ 115!A:139!A G:C WC [cWW][XIX] 10.75 50.9; 51.5 0.61 -8.71 0.3 13.71
Riboswitch 3DIQ 116!A:138!A G:A WC [cWW][VIII] 12.94 44.42; 45.7 1.29 -0.71 0.13 5.84
Riboswitch 3DIQ 117!A:137!A G:C WC [cWW][XIX] 10.7 52.7; 55.34 2.64 -14.05 0.09 17.11
Riboswitch 3DIQ 118!A:136!A G:C WC [cWW][XIX] 10.53 53.58; 56.17 2.58 -13.61 0.22 18.58
Riboswitch 3DIQ 119!A:135!A U:A WC [cWW][XX] 10.74 51.42; 54.82 3.4 -11.93 0.08 15.73
Riboswitch 3DIQ 120!A:134!A A:U WC [cWW][XX] 10.49 54.06; 55.12 1.05 -10.47 0.09 14.11
Riboswitch 3DIQ 121!A:133!A U:A WC [cWW][XX] 10.36 53.14; 55.72 2.58 -11.98 0.02 18.62
Riboswitch 3DIQ 122!A:132!A G:C WC [cWW][XIX] 10.62 55.1; 53.71 1.38 -6.22 0.23 11.06
Riboswitch 3DIQ 123!A:131!A G:C WC [cWW][XIX] 10.63 54.39; 53.33 1.06 -2.87 0.11 12.12
Riboswitch 3DIQ 124!A:130!A G:C WC [cWW][XIX] 10.64 56.89; 55.17 1.73 -2.34 0.51 14.25
Riboswitch 3DIQ 125!A:129!A G:A S [tSH][XI] 9.92 93.67; 7.03 86.64 -74.44 0.78 4.56
Riboswitch 3DIQ 125!A:127!A G:A S(sb:O2*-N7) [---][-] 6.99 74.89; 38.76 36.13 -170.56 2.3 21.9
Riboswitch 3DIQ 141!A:163!A G:G S_1 [tSH][-] 11.25 84.23; 4.68 79.55 34.89 0.28 9.2
Riboswitch 3DIQ 141!A:162!A G:A WC [cWW][VIII] 12.58 53.84; 46.53 7.32 -19.39 0.58 29.2
Riboswitch 3DIQ 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.4 159.05; 141.87 17.17 -124.98 0.38 33.39
Riboswitch 3DIQ 142!A:161!A U:G Wb [cWW][XXVIII] 10.75 61.51; 38.86 22.64 -16.46 0.27 18.8
Riboswitch 3DIQ 143!A:160!A C:G WC [cWW][XIX] 10.9 49.51; 52.79 3.28 -13.66 0.72 25.94
Riboswitch 3DIQ 144!A:159!A A:U WC [cWW][XX] 10.29 53.58; 54.08 0.5 -11.42 0.17 15.97
Riboswitch 3DIQ 145!A:158!A C:G WC [cWW][XIX] 10.78 53.5; 54.13 0.64 -13.29 0.18 25.25
Riboswitch 3DIQ 146!A:157!A G:C WC [cWW][XIX] 10.76 52.7; 50.81 1.89 -2.5 0.05 4.55
Riboswitch 3DIQ 147!A:156!A G:C WC [cWW][XIX] 10.35 55.12; 56.72 1.6 -5.44 0.15 10.41
Riboswitch 3DIQ 148!A:155!A A:U WC [cWW][XX] 10.68 49.28; 54.15 4.86 -0.78 0.02 1.91
Riboswitch 3DIQ 149!A:154!A G:C WC [cWW][XIX] 10.73 51.49; 52.39 0.9 0.46 0.18 2.27