Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIR BPC Identified: 88 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIR 1!A:174!A G:C WC [cWW][XIX] 10.9 47.6; 50.01 2.41 -3.16 1.32 7.91
Riboswitch 3DIR 2!A:173!A G:U Wb [cWW][XXVIII] 10.66 38.24; 64.32 26.08 -13.74 0.09 18.08
Riboswitch 3DIR 3!A:172!A C:G WC [cWW][XIX] 10.79 47.66; 56.68 9.02 -10.45 0.35 20.0
Riboswitch 3DIR 4!A:171!A C:G WC [cWW][XIX] 10.77 52.32; 51.82 0.5 -8.38 0.13 9.91
Riboswitch 3DIR 5!A:170!A G:C WC [cWW][XIX] 10.62 52.85; 51.76 1.08 -7.78 0.13 9.1
Riboswitch 3DIR 6!A:169!A A:U WC [cWW][XX] 10.74 50.91; 52.3 1.39 -9.09 0.02 16.4
Riboswitch 3DIR 7!A:168!A C:G WC [cWW][XIX] 10.47 54.17; 54.55 0.39 -13.01 0.15 21.51
Riboswitch 3DIR 8!A:167!A G:C WC [cWW][XIX] 10.7 53.13; 50.68 2.45 -10.26 0.3 14.57
Riboswitch 3DIR 9!A:166!A G:C WC [cWW][XIX] 10.66 53.82; 50.28 3.54 -14.03 0.7 25.59
Riboswitch 3DIR 10!A:165!A A:G WC [cWW][VIII] 12.66 43.43; 45.86 2.43 -11.01 0.61 18.89
Riboswitch 3DIR 11!A:163!A G:G rH_1 [tWH][VII] 11.31 32.17; 26.29 5.89 -161.44 0.04 8.73
Riboswitch 3DIR 12!A:79!A G:C WC [cWW][XIX] 11.03 46.67; 47.45 0.78 20.77 0.46 25.81
Riboswitch 3DIR 14!A:81!A G:A rS [tSS][-] 8.04 90.86; 61.56 29.3 163.92 0.56 20.25
Riboswitch 3DIR 14!A:78!A G:C WC [cWW][XIX] 10.44 56.75; 56.81 0.06 -4.1 0.01 4.69
Riboswitch 3DIR 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.38 150.29; 140.09 10.19 -99.47 1.17 33.12
Riboswitch 3DIR 15!A:77!A C:G WC [cWW][XIX] 10.53 54.48; 52.77 1.72 -5.82 0.17 8.66
Riboswitch 3DIR 16!A:76!A G:C WC [cWW][XIX] 10.85 50.91; 51.48 0.57 -9.68 0.07 11.41
Riboswitch 3DIR 17!A:75!A C:G WC [cWW][XIX] 10.72 50.95; 50.77 0.18 -10.7 0.13 14.38
Riboswitch 3DIR 18!A:74!A C:G WC [cWW][XIX] 10.71 50.8; 51.02 0.22 -7.73 0.04 9.65
Riboswitch 3DIR 19!A:73!A C:G WC [cWW][XIX] 10.9 48.72; 51.21 2.49 -2.69 0.04 2.88
Riboswitch 3DIR 20!A:72!A G:A S [tSH][XI] 9.26 99.14; 5.59 93.56 21.4 0.84 27.0
Riboswitch 3DIR 21!A:71!A A:G S [tSH][XI] 9.38 1.74; 90.71 88.97 -65.15 0.35 10.05
Riboswitch 3DIR 22!A:70!A G:C WC [cWW][XIX] 10.88 53.63; 50.84 2.79 -0.58 0.04 5.41
Riboswitch 3DIR 23!A:69!A A:G WC [cWW][VIII] 12.75 48.84; 48.12 0.72 3.49 0.66 7.76
Riboswitch 3DIR 25!A:67!A G:A S [tSH][XI] 9.62 91.73; 0.36 91.37 44.83 0.89 19.96
Riboswitch 3DIR 26!A:66!A A:A rS* [tHH][-] 11.24 10.22; 17.34 7.13 -119.39 0.73 15.66
Riboswitch 3DIR 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.95 80.51; 61.91 18.59 -172.87 0.01 11.51
Riboswitch 3DIR 27!A:28!A G:U pS* [cHS][-] 7.05 140.13; 53.45 86.68 -1.42 0.05 3.22
Riboswitch 3DIR 28!A:65!A U:A rH_1 [tWH][XXIV] 9.56 27.49; 23.07 4.42 -161.26 0.27 14.72
Riboswitch 3DIR 29!A:64!A A:G S [tSH][XI] 9.66 6.54; 102.4 95.86 9.69 0.12 7.11
Riboswitch 3DIR 30!A:63!A G:U Wb [cWW][XXVIII] 10.93 37.31; 60.61 23.29 -4.49 0.34 14.13
Riboswitch 3DIR 31!A:62!A G:C WC [cWW][XIX] 10.62 48.82; 57.4 8.58 -7.54 0.63 20.22
Riboswitch 3DIR 32!A:61!A C:G WC [cWW][XIX] 10.85 52.03; 53.75 1.72 -10.7 0.0 24.14
Riboswitch 3DIR 33!A:60!A U:G Wb [cWW][XXVIII] 10.89 69.22; 39.26 29.96 -12.15 0.45 21.21
Riboswitch 3DIR 34!A:59!A G:C WC [cWW][XIX] 10.99 57.88; 53.47 4.4 -0.16 0.06 4.46
Riboswitch 3DIR 35!A:58!A U:A WC [cWW][XX] 11.15 48.85; 48.61 0.24 1.9 0.41 12.38
Riboswitch 3DIR 36!A:57!A* C:G WC [cWW][XIX]; Wb* [---][-] 10.76 50.67; 63.94 13.27 -4.7 0.19 9.95
Riboswitch 3DIR 37!A:56!A C:G WC [cWW][XIX] 10.85 51.52; 56.8 5.28 -2.43 0.16 6.97
Riboswitch 3DIR 38!A:55!A C:G WC [cWW][XIX] 10.85 47.63; 54.84 7.2 8.97 0.29 6.85
Riboswitch 3DIR 41!A:54!A C:G WC [cWW][XIX] 10.96 46.81; 54.05 7.23 2.83 0.54 13.0
Riboswitch 3DIR 42!A:50!A A:A rH [tWH][V] 11.85 25.24; 25.45 0.21 106.91 0.96 29.32
Riboswitch 3DIR 43!A:47!A G:A rH_2v [---][-] 13.89 22.08; 11.39 10.69 -37.48 0.87 88.26
Riboswitch 3DIR 44!A:100!A G:C Wb [---][-] 10.63 49.22; 61.87 12.65 -1.89 0.06 7.2
Riboswitch 3DIR 45!A:99!A G:C WC [cWW][XIX] 10.66 49.77; 52.41 2.63 2.46 0.08 10.33
Riboswitch 3DIR 46!A:98!A G:C WC [cWW][XIX] 10.63 50.96; 53.16 2.2 6.05 0.1 4.55
Riboswitch 3DIR 47!A:97!A A:U WC [cWW][XX] 10.57 57.13; 56.78 0.35 0.29 0.66 13.3
Riboswitch 3DIR 48!A:96!A G:C WC [cWW][XIX] 10.85 61.8; 53.47 8.32 -3.79 0.22 10.56
Riboswitch 3DIR 49!A:95!A G:C WC [cWW][XIX] 11.1 50.72; 47.25 3.48 -12.31 0.58 30.5
Riboswitch 3DIR 68!A:126!A G:A H_1 [cWH][IX] 10.85 54.17; 42.11 12.06 30.77 0.23 44.39
Riboswitch 3DIR 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 9.06 107.01; 41.51 65.5 -143.16 0.54 44.62
Riboswitch 3DIR 69!A:127!A G:A fS [tSW][X] 9.96 107.17; 7.58 99.59 -85.45 1.78 49.38
Riboswitch 3DIR 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 5.89 106.56; 152.16 45.61 -38.97 0.09 15.57
Riboswitch 3DIR 82!A:113!A A:U WC [cWW][XX] 10.52 56.03; 54.52 1.51 4.65 0.5 13.28
Riboswitch 3DIR 83!A:112!A G:C WC [cWW][XIX] 10.55 53.41; 55.91 2.5 -3.64 0.06 6.77
Riboswitch 3DIR 84!A:111!A G:C WC [cWW][XIX] 10.79 54.2; 51.81 2.39 -2.25 0.31 10.0
Riboswitch 3DIR 85!A:109!A G:U Wb [cWW][XXVIII] 10.51 41.51; 66.66 25.15 -9.45 0.58 15.35
Riboswitch 3DIR 86!A:108!A U:A WC [cWW][XX] 10.48 54.53; 53.97 0.56 -13.07 0.02 18.47
Riboswitch 3DIR 87!A:107!A G:C WC [cWW][XIX] 10.56 54.2; 52.73 1.48 -8.3 0.09 14.27
Riboswitch 3DIR 88!A:106!A C:G WC [cWW][XIX] 10.83 50.12; 53.59 3.47 -6.86 0.08 9.04
Riboswitch 3DIR 89!A:105!A A:U WC [cWW][XX] 10.45 58.28; 53.69 4.59 -4.72 0.06 10.1
Riboswitch 3DIR 90!A:104!A G:C WC [cWW][XIX] 10.74 53.36; 55.01 1.64 -6.18 0.04 11.88
Riboswitch 3DIR 91!A:103!A A:U WC [cWW][XX] 10.74 53.25; 53.29 0.04 -6.74 0.23 10.11
Riboswitch 3DIR 92!A:102!A G:C WC [cWW][XIX] 10.85 55.46; 50.38 5.08 -7.18 0.12 23.84
Riboswitch 3DIR 93!A:101!A U:G Wb [cWW][XXVIII] 10.69 70.93; 40.94 29.99 -4.14 0.04 10.1
Riboswitch 3DIR 94!A:98!A U:C rH_2 [---][-] 13.32 8.8; 15.97 7.17 -75.52 0.88 89.93
Riboswitch 3DIR 114!A:140!A G:U Wb [cWW][XXVIII] 10.42 41.14; 63.44 22.3 -4.2 0.03 9.59
Riboswitch 3DIR 115!A:139!A G:C WC [cWW][XIX] 10.82 44.04; 51.7 7.66 -9.27 0.01 14.97
Riboswitch 3DIR 117!A:137!A G:C WC [cWW][XIX] 10.89 51.61; 52.61 1.0 -13.06 0.21 12.96
Riboswitch 3DIR 118!A:136!A G:C WC [cWW][XIX] 10.72 49.92; 53.22 3.3 -14.6 0.14 19.43
Riboswitch 3DIR 119!A:135!A U:A WC [cWW][XX] 10.89 50.48; 52.09 1.61 -6.44 0.04 11.09
Riboswitch 3DIR 120!A:134!A A:U WC [cWW][XX] 10.67 56.02; 52.5 3.52 -10.71 0.0 14.24
Riboswitch 3DIR 121!A:133!A U:A WC [cWW][XX] 10.82 51.82; 56.69 4.86 -8.72 0.26 15.76
Riboswitch 3DIR 122!A:132!A G:C WC [cWW][XIX] 10.64 55.88; 54.43 1.45 -5.85 0.01 13.03
Riboswitch 3DIR 123!A:131!A G:C WC [cWW][XIX] 10.41 56.79; 58.93 2.14 0.79 0.2 13.31
Riboswitch 3DIR 124!A:130!A G:C WC [cWW][XIX] 10.69 55.25; 53.38 1.87 0.32 0.51 11.46
Riboswitch 3DIR 125!A:129!A G:A S [tSH][XI] 9.8 95.04; 6.41 88.63 -92.22 0.26 11.96
Riboswitch 3DIR 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.06 78.26; 39.7 38.56 -166.89 1.95 25.55
Riboswitch 3DIR 141!A:163!A G:G S_1 [tSH][-] 11.16 81.26; 4.3 76.96 50.97 0.2 9.22
Riboswitch 3DIR 141!A:162!A G:A WC [cWW][VIII] 12.67 50.57; 49.05 1.51 -16.57 0.33 26.37
Riboswitch 3DIR 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.55 158.19; 139.44 18.75 -125.24 0.47 32.52
Riboswitch 3DIR 142!A:161!A U:G Wb [cWW][XXVIII] 10.59 61.84; 44.21 17.63 -15.27 0.34 17.99
Riboswitch 3DIR 143!A:160!A C:G WC [cWW][XIX] 10.8 50.25; 53.12 2.88 -13.89 0.37 22.5
Riboswitch 3DIR 144!A:159!A A:U WC [cWW][XX] 10.33 54.66; 55.62 0.97 -12.79 0.17 17.33
Riboswitch 3DIR 145!A:158!A C:G WC [cWW][XIX] 10.88 52.53; 56.49 3.96 -10.41 0.32 18.65
Riboswitch 3DIR 146!A:157!A G:C WC [cWW][XIX] 10.78 52.7; 54.37 1.67 -3.79 0.11 7.84
Riboswitch 3DIR 147!A:156!A G:C WC [cWW][XIX] 10.68 58.18; 52.5 5.67 -6.97 0.11 18.46
Riboswitch 3DIR 148!A:155!A A:U WC [cWW][XX] 11.07 54.37; 50.79 3.58 -2.08 0.32 15.16
Riboswitch 3DIR 149!A:154!A G:C WC [cWW][XIX] 10.79 51.95; 50.16 1.79 -2.9 0.1 10.49