Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIX BPC Identified: 91 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIX 1!A:174!A G:C WC [cWW][XIX] 10.97 46.98; 50.27 3.29 -6.01 0.5 9.79
Riboswitch 3DIX 2!A:173!A G:U Wb [cWW][XXVIII] 10.69 41.71; 64.9 23.19 -16.44 0.23 22.34
Riboswitch 3DIX 3!A:172!A C:G WC [cWW][XIX] 10.63 52.01; 54.34 2.33 -14.85 0.17 24.05
Riboswitch 3DIX 4!A:171!A C:G WC [cWW][XIX] 10.74 55.41; 54.65 0.76 -9.59 0.21 11.05
Riboswitch 3DIX 5!A:170!A G:C WC [cWW][XIX] 10.77 52.1; 51.26 0.84 -7.47 0.03 11.48
Riboswitch 3DIX 6!A:169!A A:U WC [cWW][XX] 10.77 54.12; 49.28 4.84 -10.71 0.04 17.42
Riboswitch 3DIX 7!A:168!A C:G WC [cWW][XIX] 10.62 55.14; 53.02 2.12 -15.02 0.49 23.3
Riboswitch 3DIX 8!A:167!A G:C WC [cWW][XIX] 10.54 54.9; 53.35 1.55 -12.9 0.3 21.22
Riboswitch 3DIX 9!A:166!A G:C WC [cWW][XIX] 10.9 54.08; 49.67 4.41 -13.82 0.84 27.92
Riboswitch 3DIX 10!A:165!A A:G WC [cWW][VIII] 12.87 45.72; 46.58 0.86 -5.35 0.43 14.75
Riboswitch 3DIX 11!A:163!A G:G rH_1 [tWH][VII] 11.29 33.09; 27.19 5.91 -165.32 0.05 6.89
Riboswitch 3DIX 12!A:79!A G:C WC [cWW][XIX] 10.96 47.82; 48.25 0.43 24.33 0.62 19.3
Riboswitch 3DIX 14!A:81!A G:A rS [tSS][-] 8.15 88.68; 60.24 28.44 160.42 0.61 26.52
Riboswitch 3DIX 14!A:78!A G:C WC [cWW][XIX] 10.7 53.58; 52.05 1.53 -5.19 0.16 14.23
Riboswitch 3DIX 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.44 149.6; 140.16 9.44 -99.3 0.82 30.45
Riboswitch 3DIX 15!A:77!A C:G WC [cWW][XIX] 10.69 53.78; 53.13 0.66 -6.69 0.11 15.93
Riboswitch 3DIX 16!A:76!A G:C WC [cWW][XIX] 10.68 53.36; 54.72 1.36 -9.4 0.03 18.02
Riboswitch 3DIX 17!A:75!A C:G WC [cWW][XIX] 10.72 51.74; 50.8 0.95 -8.49 0.18 13.13
Riboswitch 3DIX 18!A:74!A C:G WC [cWW][XIX] 10.73 53.87; 55.46 1.59 -4.53 0.14 8.51
Riboswitch 3DIX 19!A:73!A C:G WC [cWW][XIX] 10.87 51.38; 52.08 0.7 1.22 0.07 2.5
Riboswitch 3DIX 20!A:72!A G:A S [tSH][XI] 9.27 99.33; 6.79 92.54 7.26 1.11 27.44
Riboswitch 3DIX 21!A:71!A A:G S [tSH][XI] 9.55 3.23; 96.0 92.77 -12.31 0.1 11.2
Riboswitch 3DIX 22!A:70!A G:C WC [cWW][XIX] 11.01 51.35; 51.44 0.09 -1.3 0.04 8.68
Riboswitch 3DIX 23!A:69!A A:G WC [cWW][VIII] 12.76 46.66; 45.93 0.73 1.72 0.98 13.5
Riboswitch 3DIX 25!A:67!A G:A S [tSH][XI] 9.5 93.84; 0.77 93.07 0.3 0.65 19.66
Riboswitch 3DIX 26!A:66!A A:A rS* [tHH][-] 11.08 11.48; 14.86 3.39 -130.3 0.32 11.45
Riboswitch 3DIX 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.98 81.09; 60.29 20.8 -173.5 0.73 12.18
Riboswitch 3DIX 27!A:28!A G:U pS* [cHS][-] 6.83 139.7; 54.0 85.7 2.15 0.27 2.28
Riboswitch 3DIX 28!A:65!A U:A rH_1 [tWH][XXIV] 9.44 29.18; 22.39 6.8 -168.23 0.54 13.53
Riboswitch 3DIX 29!A:64!A A:G S [tSH][XI] 9.61 7.13; 98.23 91.1 -3.9 0.21 9.71
Riboswitch 3DIX 30!A:63!A G:U Wb [cWW][XXVIII] 10.54 40.71; 65.58 24.87 -7.65 0.15 15.11
Riboswitch 3DIX 31!A:62!A G:C WC [cWW][XIX] 10.91 53.16; 54.41 1.25 -0.53 0.31 9.03
Riboswitch 3DIX 32!A:61!A C:G WC [cWW][XIX] 10.73 53.88; 53.83 0.05 -5.84 0.17 12.23
Riboswitch 3DIX 33!A:60!A U:G Wb [cWW][XXVIII] 10.73 67.53; 43.34 24.19 -9.57 0.33 14.6
Riboswitch 3DIX 34!A:59!A G:C WC [cWW][XIX] 10.8 54.14; 55.9 1.76 -5.03 0.59 15.05
Riboswitch 3DIX 35!A:58!A U:A WC [cWW][XX] 10.58 56.45; 49.63 6.81 -7.92 0.1 12.31
Riboswitch 3DIX 36!A:57!A C:G WC [cWW][XIX] 10.63 53.31; 55.02 1.71 -9.2 0.21 14.68
Riboswitch 3DIX 37!A:56!A C:G WC [cWW][XIX] 10.8 50.66; 55.7 5.04 -3.34 0.03 5.81
Riboswitch 3DIX 38!A:55!A C:G WC [cWW][XIX] 10.93 49.13; 55.61 6.48 5.66 0.17 5.21
Riboswitch 3DIX 40!A:54!A U:G WC_mo [---][-] 10.67 53.58; 48.43 5.15 -24.92 2.3 7.96
Riboswitch 3DIX 40!A:52!A U:U rWb [tWW][XIII] 8.79 41.64; 35.13 6.52 -175.37 0.32 19.66
Riboswitch 3DIX 41!A:54!A C:G WC [cWW][XIX] 10.92 47.67; 53.77 6.1 2.55 0.48 16.55
Riboswitch 3DIX 42!A:50!A A:A rH [tWH][V] 11.8 26.36; 24.62 1.73 117.78 1.1 26.71
Riboswitch 3DIX 43!A:47!A G:A rH_2v [---][-] 13.67 22.18; 12.25 9.93 -41.95 0.99 87.61
Riboswitch 3DIX 44!A:100!A G:C WC [cWW][XIX] 10.65 52.53; 56.18 3.65 -5.72 0.01 16.26
Riboswitch 3DIX 45!A:99!A G:C WC [cWW][XIX] 10.79 51.04; 52.06 1.02 0.62 0.21 9.97
Riboswitch 3DIX 46!A:98!A G:C WC [cWW][XIX] 10.72 52.91; 52.39 0.52 1.08 0.04 1.46
Riboswitch 3DIX 47!A:97!A A:U WC [cWW][XX] 10.64 56.47; 54.06 2.41 0.36 0.4 18.8
Riboswitch 3DIX 48!A:96!A G:C WC [cWW][XIX] 10.79 53.48; 52.45 1.02 -5.26 0.14 9.38
Riboswitch 3DIX 49!A:95!A G:C WC [cWW][XIX] 10.88 51.31; 53.5 2.2 -15.64 0.65 28.95
Riboswitch 3DIX 68!A:126!A G:A H_1 [cWH][IX] 11.0 51.45; 40.84 10.61 30.65 0.02 40.37
Riboswitch 3DIX 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 9.05 104.45; 44.73 59.72 -142.62 0.8 44.37
Riboswitch 3DIX 69!A:127!A G:A fS [tSW][X] 9.94 105.96; 8.23 97.73 -94.9 1.97 49.77
Riboswitch 3DIX 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 6.18 101.15; 149.27 48.12 -40.61 1.33 12.9
Riboswitch 3DIX 82!A:113!A A:U WC [cWW][XX] 10.36 56.0; 56.65 0.65 3.99 0.23 11.91
Riboswitch 3DIX 83!A:112!A G:C WC [cWW][XIX] 10.68 56.59; 54.47 2.12 -1.44 0.05 6.38
Riboswitch 3DIX 84!A:111!A G:C WC [cWW][XIX] 10.67 54.39; 51.86 2.54 0.84 0.2 8.07
Riboswitch 3DIX 85!A:109!A G:U Wb [cWW][XXVIII] 10.67 41.37; 63.71 22.34 -9.76 0.01 10.14
Riboswitch 3DIX 86!A:108!A U:A WC [cWW][XX] 10.58 51.11; 54.07 2.96 -13.32 0.15 17.0
Riboswitch 3DIX 87!A:107!A G:C WC [cWW][XIX] 10.7 53.73; 55.51 1.77 -10.48 0.12 13.62
Riboswitch 3DIX 88!A:106!A C:G WC [cWW][XIX] 10.92 51.0; 53.47 2.47 -5.94 0.19 12.31
Riboswitch 3DIX 89!A:105!A A:U WC [cWW][XX] 10.4 56.88; 57.13 0.25 -6.62 0.0 12.1
Riboswitch 3DIX 90!A:104!A G:C WC [cWW][XIX] 10.72 52.86; 57.14 4.28 -3.66 0.22 10.05
Riboswitch 3DIX 91!A:103!A A:U WC [cWW][XX] 10.39 57.64; 53.81 3.82 -7.63 0.1 15.47
Riboswitch 3DIX 92!A:102!A G:C WC [cWW][XIX] 10.66 54.95; 50.32 4.63 -12.82 0.47 34.04
Riboswitch 3DIX 93!A:101!A U:G Wb [cWW][XXVIII] 10.68 65.88; 39.35 26.53 -5.88 0.05 12.52
Riboswitch 3DIX 94!A:98!A U:C rH_2 [---][-] 13.14 11.26; 14.95 3.69 -67.59 0.37 83.41
Riboswitch 3DIX 114!A:140!A G:U Wb [cWW][XXVIII] 10.48 41.29; 64.91 23.62 -8.51 0.16 12.37
Riboswitch 3DIX 115!A:139!A G:C WC [cWW][XIX] 10.91 49.73; 51.4 1.67 -6.61 0.22 14.71
Riboswitch 3DIX 116!A:138!A G:A WC [cWW][VIII] 13.01 45.84; 42.96 2.89 -0.82 0.16 8.32
Riboswitch 3DIX 117!A:137!A G:C WC [cWW][XIX] 10.68 53.05; 53.75 0.69 -10.69 0.08 12.19
Riboswitch 3DIX 118!A:136!A G:C WC [cWW][XIX] 10.62 51.72; 57.51 5.78 -15.55 0.06 20.21
Riboswitch 3DIX 119!A:135!A U:A WC [cWW][XX] 10.62 52.62; 55.12 2.5 -12.03 0.22 17.87
Riboswitch 3DIX 120!A:134!A A:U WC [cWW][XX] 10.53 55.13; 56.25 1.12 -11.22 0.12 13.71
Riboswitch 3DIX 121!A:133!A U:A WC [cWW][XX] 10.55 57.2; 55.24 1.96 -12.43 0.32 12.95
Riboswitch 3DIX 122!A:132!A G:C WC [cWW][XIX] 10.61 55.48; 51.76 3.72 -6.8 0.09 13.34
Riboswitch 3DIX 123!A:131!A G:C WC [cWW][XIX] 10.68 56.11; 52.52 3.59 -1.67 0.04 11.98
Riboswitch 3DIX 124!A:130!A G:C WC [cWW][XIX] 10.71 55.7; 53.48 2.22 -0.31 0.35 10.11
Riboswitch 3DIX 125!A:129!A G:A S [tSH][XI] 10.0 93.72; 5.55 88.16 -62.09 0.28 10.17
Riboswitch 3DIX 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.09 74.89; 39.21 35.68 -168.06 2.45 24.63
Riboswitch 3DIX 141!A:163!A G:G S_1 [tSH][-] 11.45 83.16; 4.42 78.74 10.36 0.27 6.29
Riboswitch 3DIX 141!A:162!A G:A WC [cWW][VIII] 12.57 51.78; 48.23 3.55 -16.4 0.45 31.14
Riboswitch 3DIX 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.46 158.78; 139.56 19.22 -129.18 0.7 31.76
Riboswitch 3DIX 142!A:161!A U:G Wb [cWW][XXVIII] 10.68 63.71; 40.21 23.5 -12.6 0.14 12.56
Riboswitch 3DIX 143!A:160!A C:G WC [cWW][XIX] 10.81 48.88; 54.19 5.31 -12.34 0.31 20.36
Riboswitch 3DIX 144!A:159!A A:U WC [cWW][XX] 10.38 52.75; 55.93 3.18 -11.14 0.17 12.22
Riboswitch 3DIX 145!A:158!A C:G WC [cWW][XIX] 10.73 54.36; 53.45 0.91 -9.9 0.1 16.01
Riboswitch 3DIX 146!A:157!A G:C WC [cWW][XIX] 10.62 54.13; 53.95 0.18 -2.88 0.06 6.8
Riboswitch 3DIX 147!A:156!A G:C WC [cWW][XIX] 10.61 57.28; 54.08 3.2 -5.6 0.27 13.22
Riboswitch 3DIX 148!A:155!A A:U WC [cWW][XX] 10.85 51.69; 52.83 1.14 0.61 0.03 7.52
Riboswitch 3DIX 149!A:154!A G:C WC [cWW][XIX] 10.87 52.15; 50.85 1.3 -0.42 0.07 11.94