Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIY BPC Identified: 93 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIY 1!A:174!A G:C WC [cWW][XIX] 10.98 48.24; 50.21 1.97 -6.25 1.39 4.99
Riboswitch 3DIY 2!A:173!A G:U Wb [cWW][XXVIII] 10.53 44.23; 68.54 24.3 -14.5 0.01 20.21
Riboswitch 3DIY 3!A:172!A C:G WC [cWW][XIX] 10.64 54.54; 54.32 0.21 -14.85 0.14 20.04
Riboswitch 3DIY 4!A:171!A C:G WC [cWW][XIX] 10.75 54.21; 52.98 1.22 -8.46 0.01 11.9
Riboswitch 3DIY 5!A:170!A G:C WC [cWW][XIX] 10.7 53.43; 52.21 1.22 -10.43 0.1 11.78
Riboswitch 3DIY 6!A:169!A A:U WC [cWW][XX] 10.85 54.48; 51.44 3.05 -10.2 0.3 15.96
Riboswitch 3DIY 7!A:168!A C:G WC [cWW][XIX] 10.6 54.15; 55.24 1.1 -14.75 0.41 22.36
Riboswitch 3DIY 8!A:167!A G:C WC [cWW][XIX] 10.56 52.38; 53.81 1.43 -12.84 0.36 19.64
Riboswitch 3DIY 9!A:166!A G:C WC [cWW][XIX] 10.76 52.96; 52.02 0.93 -11.7 0.87 26.01
Riboswitch 3DIY 10!A:165!A A:G WC [cWW][VIII] 12.71 47.67; 47.42 0.25 -7.08 0.53 16.66
Riboswitch 3DIY 11!A:163!A G:G rH_1 [tWH][VII] 11.28 32.56; 26.06 6.5 -165.22 0.09 7.42
Riboswitch 3DIY 12!A:79!A G:C WC [cWW][XIX] 10.98 47.33; 50.42 3.09 24.89 0.21 23.88
Riboswitch 3DIY 14!A:81!A G:A rS [tSS][-] 8.18 88.56; 60.77 27.79 160.86 0.79 25.85
Riboswitch 3DIY 14!A:78!A G:C WC [cWW][XIX] 10.59 53.83; 54.11 0.29 -6.07 0.11 12.52
Riboswitch 3DIY 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.39 152.09; 140.63 11.46 -104.1 0.63 28.51
Riboswitch 3DIY 15!A:77!A C:G WC [cWW][XIX] 10.66 55.17; 55.3 0.13 -7.46 0.18 13.62
Riboswitch 3DIY 16!A:76!A G:C WC [cWW][XIX] 10.76 52.16; 53.38 1.23 -7.27 0.2 12.91
Riboswitch 3DIY 17!A:75!A C:G WC [cWW][XIX] 10.72 50.5; 49.91 0.59 -6.91 0.05 13.67
Riboswitch 3DIY 18!A:74!A C:G WC [cWW][XIX] 10.66 52.38; 51.77 0.61 -6.28 0.16 10.73
Riboswitch 3DIY 19!A:73!A C:G WC [cWW][XIX] 10.92 53.2; 51.21 2.0 1.29 0.14 1.85
Riboswitch 3DIY 20!A:72!A G:A S [tSH][XI] 9.26 100.02; 8.93 91.09 14.2 0.65 26.15
Riboswitch 3DIY 21!A:71!A A:G S [tSH][XI] 9.46 3.44; 94.99 91.55 -32.4 0.28 8.78
Riboswitch 3DIY 22!A:70!A G:C WC [cWW][XIX] 10.82 49.26; 52.07 2.82 -0.59 0.25 5.34
Riboswitch 3DIY 23!A:69!A A:G WC [cWW][VIII] 12.81 47.67; 47.63 0.04 3.91 0.44 10.41
Riboswitch 3DIY 25!A:67!A G:A S [tSH][XI] 9.61 93.54; 0.14 93.4 -179.39 0.7 16.44
Riboswitch 3DIY 26!A:66!A A:A rS* [tHH][-] 11.19 9.01; 17.68 8.68 -116.83 0.67 15.05
Riboswitch 3DIY 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.89 81.17; 63.11 18.07 -173.11 0.19 10.86
Riboswitch 3DIY 27!A:28!A G:U pS* [cHS][-] 7.01 140.75; 54.4 86.35 5.38 0.02 5.26
Riboswitch 3DIY 28!A:65!A U:A rH_1 [tWH][XXIV] 9.52 26.52; 23.88 2.64 -172.85 0.37 13.74
Riboswitch 3DIY 29!A:64!A A:G S [tSH][XI] 9.55 5.98; 95.98 90.0 1.65 0.06 7.34
Riboswitch 3DIY 30!A:63!A G:U Wb [cWW][XXVIII] 10.68 39.74; 62.24 22.5 -8.21 0.01 15.61
Riboswitch 3DIY 31!A:62!A G:C WC [cWW][XIX] 11.14 50.99; 50.21 0.78 -3.91 0.43 15.92
Riboswitch 3DIY 32!A:61!A C:G WC [cWW][XIX] 10.82 48.85; 55.42 6.57 -6.96 0.07 11.2
Riboswitch 3DIY 33!A:60!A U:G Wb [cWW][XXVIII] 11.23 65.06; 33.85 31.21 -6.51 0.05 15.14
Riboswitch 3DIY 34!A:59!A G:C WC [cWW][XIX] 11.41 45.64; 55.18 9.54 -8.98 0.66 17.59
Riboswitch 3DIY 35!A:58!A U:A WC [cWW][XX] 10.93 53.01; 49.85 3.16 -4.42 0.15 4.32
Riboswitch 3DIY 36!A:57!A C:G WC [cWW][XIX] 11.02 50.63; 52.4 1.77 -4.46 0.19 17.64
Riboswitch 3DIY 37!A:56!A C:G WC [cWW][XIX] 10.79 54.16; 58.03 3.87 -5.25 0.02 7.45
Riboswitch 3DIY 38!A:55!A C:G WC [cWW][XIX] 10.93 51.6; 54.08 2.48 3.66 0.07 3.58
Riboswitch 3DIY 39!A:41!A A:C pS* [cHS][-] 7.07 123.92; 41.25 82.67 43.51 1.3 29.57
Riboswitch 3DIY 40!A:54!A U:G WC [---][-] 10.37 54.02; 51.96 2.07 -24.89 2.55 7.93
Riboswitch 3DIY 40!A:52!A U:U rWb [tWW][XIII] 8.66 42.85; 40.0 2.85 179.86 1.0 26.18
Riboswitch 3DIY 41!A:54!A C:G WC [cWW][XIX] 11.04 46.29; 57.29 10.99 2.66 0.45 17.51
Riboswitch 3DIY 42!A:50!A A:A rH [tWH][V] 11.81 26.28; 28.49 2.21 122.81 1.11 26.62
Riboswitch 3DIY 43!A:47!A G:A rH_2v [---][-] 13.69 23.02; 13.48 9.53 -40.04 1.0 83.2
Riboswitch 3DIY 44!A:100!A G:C WC [cWW][XIX] 10.51 52.97; 58.24 5.27 -7.34 0.26 12.7
Riboswitch 3DIY 45!A:99!A G:C WC [cWW][XIX] 10.81 49.75; 54.5 4.75 1.57 0.16 8.17
Riboswitch 3DIY 46!A:98!A G:C WC [cWW][XIX] 10.7 53.44; 53.01 0.44 1.15 0.16 3.55
Riboswitch 3DIY 47!A:97!A A:U WC [cWW][XX] 10.56 56.17; 54.39 1.78 -0.71 0.26 16.97
Riboswitch 3DIY 48!A:96!A G:C WC [cWW][XIX] 10.78 54.16; 51.14 3.01 -8.49 0.27 14.54
Riboswitch 3DIY 49!A:95!A G:C WC [cWW][XIX] 10.72 53.9; 54.6 0.7 -11.32 0.54 23.28
Riboswitch 3DIY 51!A:54!A A:G pfS(sb:O2*-N3) [---][-] 5.13 87.49; 148.48 61.0 21.0 1.1 66.56
Riboswitch 3DIY 68!A:126!A G:A H_1 [cWH][IX] 11.0 50.96; 41.04 9.93 30.33 0.01 39.28
Riboswitch 3DIY 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 9.0 104.89; 43.51 61.38 -141.69 0.65 45.68
Riboswitch 3DIY 69!A:127!A G:A fS [tSW][X] 9.96 106.05; 10.11 95.94 -94.53 1.77 48.94
Riboswitch 3DIY 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 6.05 104.28; 149.79 45.5 -39.13 0.87 13.43
Riboswitch 3DIY 82!A:113!A A:U WC [cWW][XX] 10.38 55.33; 55.77 0.44 5.72 0.17 11.02
Riboswitch 3DIY 83!A:112!A G:C WC [cWW][XIX] 10.62 54.32; 55.99 1.66 -3.28 0.02 9.65
Riboswitch 3DIY 84!A:111!A G:C WC [cWW][XIX] 10.77 53.79; 51.82 1.97 -0.39 0.14 6.18
Riboswitch 3DIY 85!A:109!A G:U Wb [cWW][XXVIII] 10.57 41.28; 65.78 24.5 -8.72 0.18 7.52
Riboswitch 3DIY 86!A:108!A U:A WC [cWW][XX] 10.49 52.39; 54.42 2.03 -13.21 0.05 16.4
Riboswitch 3DIY 87!A:107!A G:C WC [cWW][XIX] 10.53 51.43; 55.87 4.43 -10.86 0.01 15.64
Riboswitch 3DIY 88!A:106!A C:G WC [cWW][XIX] 10.84 50.69; 52.9 2.21 -6.06 0.03 14.64
Riboswitch 3DIY 89!A:105!A A:U WC [cWW][XX] 10.5 58.25; 54.47 3.78 -6.14 0.04 11.78
Riboswitch 3DIY 90!A:104!A G:C WC [cWW][XIX] 10.67 53.1; 54.87 1.76 -6.46 0.14 11.51
Riboswitch 3DIY 91!A:103!A A:U WC [cWW][XX] 10.44 58.69; 54.28 4.41 -7.54 0.04 12.45
Riboswitch 3DIY 92!A:102!A G:C WC [cWW][XIX] 10.72 55.64; 48.3 7.34 -12.26 0.22 26.9
Riboswitch 3DIY 93!A:101!A U:G Wb [cWW][XXVIII] 10.69 63.98; 39.44 24.54 -3.35 0.12 8.07
Riboswitch 3DIY 94!A:98!A U:C rH_2 [---][-] 13.06 12.25; 15.32 3.07 -64.52 0.59 80.37
Riboswitch 3DIY 114!A:140!A G:U Wb [cWW][XXVIII] 10.43 41.74; 66.81 25.07 -7.11 0.09 8.74
Riboswitch 3DIY 115!A:139!A G:C WC [cWW][XIX] 10.87 51.47; 52.46 0.98 -9.23 0.49 15.8
Riboswitch 3DIY 116!A:138!A G:A WC [cWW][VIII] 12.87 46.52; 43.41 3.11 -2.51 0.27 8.4
Riboswitch 3DIY 117!A:137!A G:C WC [cWW][XIX] 10.79 54.04; 48.46 5.58 -14.58 0.19 14.91
Riboswitch 3DIY 118!A:136!A G:C WC [cWW][XIX] 10.7 52.49; 55.29 2.8 -14.66 0.32 19.87
Riboswitch 3DIY 119!A:135!A U:A WC [cWW][XX] 10.71 52.8; 54.65 1.85 -11.15 0.08 15.09
Riboswitch 3DIY 120!A:134!A A:U WC [cWW][XX] 10.49 54.88; 54.39 0.49 -11.01 0.13 15.15
Riboswitch 3DIY 121!A:133!A U:A WC [cWW][XX] 10.41 56.0; 56.4 0.4 -10.01 0.08 13.15
Riboswitch 3DIY 122!A:132!A G:C WC [cWW][XIX] 10.47 54.43; 58.04 3.62 -4.59 0.13 8.85
Riboswitch 3DIY 123!A:131!A G:C WC [cWW][XIX] 10.6 53.09; 54.71 1.62 -2.07 0.32 13.56
Riboswitch 3DIY 124!A:130!A G:C WC [cWW][XIX] 10.57 55.99; 55.13 0.86 -1.09 0.48 11.99
Riboswitch 3DIY 125!A:129!A G:A S [tSH][XI] 9.98 94.11; 5.29 88.82 -73.88 0.18 9.68
Riboswitch 3DIY 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.08 75.32; 37.73 37.59 -169.37 2.52 25.27
Riboswitch 3DIY 141!A:163!A G:G S_1 [tSH][-] 11.34 80.68; 3.09 77.59 32.77 0.34 9.03
Riboswitch 3DIY 141!A:162!A G:A WC [cWW][VIII] 12.57 48.99; 47.71 1.28 -16.6 0.38 29.74
Riboswitch 3DIY 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.38 158.01; 139.26 18.75 -130.74 0.33 31.22
Riboswitch 3DIY 142!A:161!A U:G Wb [cWW][XXVIII] 10.78 63.8; 38.86 24.94 -14.57 0.03 17.83
Riboswitch 3DIY 143!A:160!A C:G WC [cWW][XIX] 10.83 49.0; 53.19 4.19 -13.5 0.41 21.43
Riboswitch 3DIY 144!A:159!A A:U WC [cWW][XX] 10.42 53.19; 54.74 1.55 -12.73 0.1 19.21
Riboswitch 3DIY 145!A:158!A C:G WC [cWW][XIX] 10.65 54.64; 53.31 1.33 -10.18 0.21 17.99
Riboswitch 3DIY 146!A:157!A G:C WC [cWW][XIX] 10.63 54.76; 55.26 0.5 -2.92 0.1 6.33
Riboswitch 3DIY 147!A:156!A G:C WC [cWW][XIX] 10.55 57.87; 58.55 0.68 -7.92 0.31 15.09
Riboswitch 3DIY 148!A:155!A A:U WC [cWW][XX] 10.98 50.56; 52.88 2.33 -2.09 0.17 5.09
Riboswitch 3DIY 149!A:154!A G:C WC [cWW][XIX] 10.87 55.82; 49.91 5.92 -8.82 0.12 14.42