Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DIZ BPC Identified: 90 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DIZ 1!A:174!A G:C WC [cWW][XIX] 11.17 52.08; 48.24 3.84 -1.78 0.69 5.29
Riboswitch 3DIZ 2!A:173!A G:U Wb [cWW][XXVIII] 10.47 39.84; 68.16 28.32 -9.66 0.06 16.82
Riboswitch 3DIZ 3!A:172!A C:G WC [cWW][XIX] 10.71 55.21; 54.75 0.46 -14.27 0.06 17.45
Riboswitch 3DIZ 4!A:171!A C:G WC [cWW][XIX] 10.58 54.48; 51.18 3.29 -10.46 0.38 17.02
Riboswitch 3DIZ 5!A:170!A G:C WC [cWW][XIX] 10.65 50.98; 54.43 3.45 -8.57 0.03 14.24
Riboswitch 3DIZ 6!A:169!A A:U WC [cWW][XX] 10.82 55.95; 48.5 7.45 -8.74 0.1 10.9
Riboswitch 3DIZ 7!A:168!A C:G WC [cWW][XIX] 10.47 54.26; 56.67 2.4 -17.42 0.42 26.24
Riboswitch 3DIZ 8!A:167!A G:C WC [cWW][XIX] 10.54 53.54; 54.0 0.45 -12.58 0.51 20.02
Riboswitch 3DIZ 9!A:166!A G:C WC [cWW][XIX] 10.7 55.27; 52.08 3.19 -14.26 0.76 26.96
Riboswitch 3DIZ 10!A:165!A A:G WC [cWW][VIII] 12.71 46.45; 48.27 1.82 -10.48 0.36 15.87
Riboswitch 3DIZ 11!A:163!A G:G rH_1 [tWH][VII] 11.12 33.68; 29.84 3.84 -167.57 0.41 6.99
Riboswitch 3DIZ 12!A:79!A G:C WC [cWW][XIX] 10.68 46.97; 50.65 3.68 23.89 0.51 31.22
Riboswitch 3DIZ 14!A:81!A G:A rS [tSS][-] 8.04 90.85; 59.42 31.43 161.95 0.8 23.64
Riboswitch 3DIZ 14!A:78!A G:C WC [cWW][XIX] 10.43 55.07; 54.8 0.26 -2.87 0.21 13.84
Riboswitch 3DIZ 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.36 154.48; 146.57 7.92 -100.41 1.11 27.64
Riboswitch 3DIZ 15!A:77!A C:G WC [cWW][XIX] 10.55 57.71; 54.49 3.22 -5.49 0.14 12.57
Riboswitch 3DIZ 16!A:76!A G:C WC [cWW][XIX] 10.66 54.06; 53.61 0.45 -7.62 0.01 12.64
Riboswitch 3DIZ 17!A:75!A C:G WC [cWW][XIX] 10.51 54.53; 52.61 1.93 -5.0 0.33 12.58
Riboswitch 3DIZ 18!A:74!A C:G WC [cWW][XIX] 10.69 51.86; 54.79 2.93 -1.88 0.14 7.33
Riboswitch 3DIZ 19!A:73!A C:G WC [cWW][XIX] 10.92 49.09; 50.69 1.6 -2.7 0.08 3.57
Riboswitch 3DIZ 20!A:72!A G:A S [tSH][XI] 9.27 98.86; 9.6 89.26 29.33 0.38 23.96
Riboswitch 3DIZ 21!A:71!A A:G S [tSH][XI] 9.62 2.88; 94.79 91.91 -8.64 0.15 9.34
Riboswitch 3DIZ 22!A:70!A G:C WC [cWW][XIX] 10.7 49.5; 51.7 2.2 -1.15 0.22 4.04
Riboswitch 3DIZ 23!A:69!A A:G WC [cWW][VIII] 12.64 47.96; 45.88 2.09 4.18 0.92 8.22
Riboswitch 3DIZ 25!A:67!A G:A S [tSH][XI] 9.58 91.51; 2.91 88.6 152.79 0.28 18.73
Riboswitch 3DIZ 26!A:66!A A:A rS* [tHH][-] 11.4 13.21; 15.2 1.99 -115.67 0.73 16.88
Riboswitch 3DIZ 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 11.1 81.9; 59.82 22.08 -169.15 0.37 17.74
Riboswitch 3DIZ 27!A:28!A G:U pS* [cHS][-] 6.87 139.23; 55.1 84.13 1.07 0.1 5.85
Riboswitch 3DIZ 28!A:65!A U:A rH_1 [tWH][XXIV] 9.4 29.65; 22.5 7.15 -156.22 0.86 23.03
Riboswitch 3DIZ 29!A:64!A A:G S [tSH][XI] 9.5 9.64; 101.04 91.4 -7.95 0.37 8.85
Riboswitch 3DIZ 30!A:63!A G:U Wb [cWW][XXVIII] 10.47 36.0; 67.78 31.78 -7.18 0.09 15.61
Riboswitch 3DIZ 31!A:62!A G:C WC [cWW][XIX] 10.8 51.35; 55.97 4.62 -3.12 0.51 14.47
Riboswitch 3DIZ 32!A:61!A C:G WC [cWW][XIX] 10.74 52.76; 48.14 4.62 -11.29 0.5 23.64
Riboswitch 3DIZ 33!A:60!A U:G Wb_Mo [cWW][XXVIII] 10.83 73.21; 48.11 25.1 -10.12 0.45 13.48
Riboswitch 3DIZ 34!A:59!A G:C WC [cWW][XIX] 10.78 53.62; 58.4 4.78 -4.97 0.37 10.39
Riboswitch 3DIZ 35!A:58!A U:A WC [cWW][XX] 10.67 57.68; 51.34 6.35 -6.11 0.41 19.53
Riboswitch 3DIZ 36!A:57!A C:G WC [cWW][XIX] 10.37 62.92; 59.3 3.62 -14.89 0.54 23.62
Riboswitch 3DIZ 37!A:56!A C:G WC [cWW][XIX] 10.75 54.69; 55.51 0.82 -4.13 0.09 7.39
Riboswitch 3DIZ 38!A:55!A C:G WC [cWW][XIX] 10.65 57.69; 52.81 4.88 4.12 0.08 4.06
Riboswitch 3DIZ 40!A:54!A U:G WC [---][-] 10.49 51.79; 51.2 0.59 -24.07 2.44 8.68
Riboswitch 3DIZ 40!A:52!A U:U rWb [tWW][XIII] 8.65 41.25; 39.41 1.85 -171.1 1.28 31.17
Riboswitch 3DIZ 41!A:54!A C:G WC [cWW][XIX] 11.01 46.56; 53.97 7.41 -0.86 0.41 15.29
Riboswitch 3DIZ 42!A:50!A A:A rH [tWH][V] 11.8 26.65; 24.2 2.45 108.98 1.17 30.96
Riboswitch 3DIZ 43!A:47!A G:A rH_2v [---][-] 13.73 20.91; 8.97 11.94 -43.96 0.98 89.45
Riboswitch 3DIZ 44!A:100!A G:C WC [cWW][XIX] 10.47 50.66; 59.17 8.51 -10.04 0.17 16.32
Riboswitch 3DIZ 45!A:99!A G:C WC [cWW][XIX] 10.52 51.68; 53.73 2.05 -3.43 0.23 8.75
Riboswitch 3DIZ 46!A:98!A G:C WC [cWW][XIX] 10.92 48.95; 50.48 1.53 -2.24 0.01 7.4
Riboswitch 3DIZ 47!A:97!A A:U WC [cWW][XX] 10.45 59.88; 53.37 6.51 4.39 0.78 25.21
Riboswitch 3DIZ 48!A:96!A G:C WC [cWW][XIX] 10.89 60.98; 49.77 11.21 -4.05 0.68 18.63
Riboswitch 3DIZ 49!A:95!A G:C WC [cWW][XIX] 10.78 56.39; 48.93 7.45 -12.3 0.7 25.69
Riboswitch 3DIZ 68!A:126!A G:A H_1 [cWH][IX] 10.81 48.78; 42.35 6.43 30.09 0.25 43.8
Riboswitch 3DIZ 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 8.93 104.8; 43.42 61.37 -141.96 0.53 47.04
Riboswitch 3DIZ 69!A:127!A G:A fS [tSW][X] 9.71 104.6; 6.93 97.67 -86.23 2.11 55.9
Riboswitch 3DIZ 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 6.12 104.93; 147.48 42.55 -36.97 1.44 10.33
Riboswitch 3DIZ 82!A:113!A A:U WC [cWW][XX] 10.34 53.92; 55.69 1.77 0.02 0.3 7.31
Riboswitch 3DIZ 83!A:112!A G:C WC [cWW][XIX] 10.35 55.44; 56.92 1.48 -0.49 0.12 7.64
Riboswitch 3DIZ 84!A:111!A G:C WC [cWW][XIX] 10.42 55.84; 55.63 0.21 -2.11 0.35 9.25
Riboswitch 3DIZ 85!A:109!A G:U Wb [cWW][XXVIII] 10.31 36.66; 69.39 32.73 -12.25 0.69 6.45
Riboswitch 3DIZ 86!A:108!A U:A WC [cWW][XX] 10.34 55.84; 55.4 0.43 -10.16 0.18 15.41
Riboswitch 3DIZ 87!A:107!A G:C WC [cWW][XIX] 10.55 53.74; 54.58 0.84 -7.27 0.18 12.67
Riboswitch 3DIZ 88!A:106!A C:G WC [cWW][XIX] 10.68 56.16; 51.12 5.05 -10.27 0.15 18.44
Riboswitch 3DIZ 89!A:105!A A:U WC [cWW][XX] 10.24 57.85; 60.27 2.42 -8.41 0.16 16.4
Riboswitch 3DIZ 90!A:104!A G:C WC [cWW][XIX] 10.61 57.55; 54.0 3.55 -2.13 0.01 14.87
Riboswitch 3DIZ 91!A:103!A A:U WC [cWW][XX] 10.32 59.5; 51.46 8.04 -7.27 0.08 18.65
Riboswitch 3DIZ 92!A:102!A G:C WC [cWW][XIX] 10.61 55.61; 51.81 3.8 -10.13 0.41 26.36
Riboswitch 3DIZ 93!A:101!A U:G Wb [cWW][XXVIII] 10.51 68.19; 38.9 29.3 -3.81 0.21 11.1
Riboswitch 3DIZ 94!A:98!A U:C rH_2 [---][-] 13.03 11.18; 17.85 6.67 -58.35 0.79 80.18
Riboswitch 3DIZ 114!A:140!A G:U Wb [cWW][XXVIII] 10.42 41.28; 66.54 25.26 -2.39 0.08 4.56
Riboswitch 3DIZ 115!A:139!A G:C WC [cWW][XIX] 10.61 50.06; 55.14 5.08 -7.87 0.43 15.26
Riboswitch 3DIZ 116!A:138!A G:A WC [cWW][VIII] 12.84 47.09; 42.82 4.27 0.39 0.19 5.85
Riboswitch 3DIZ 117!A:137!A G:C WC [cWW][XIX] 10.68 53.16; 54.1 0.93 -15.73 0.25 19.0
Riboswitch 3DIZ 118!A:136!A G:C WC [cWW][XIX] 10.56 52.74; 55.18 2.44 -17.94 0.33 20.33
Riboswitch 3DIZ 119!A:135!A U:A WC [cWW][XX] 10.83 49.43; 55.14 5.71 -13.28 0.04 19.47
Riboswitch 3DIZ 120!A:134!A A:U WC [cWW][XX] 10.41 54.19; 54.85 0.66 -13.65 0.27 17.26
Riboswitch 3DIZ 121!A:133!A U:A WC [cWW][XX] 10.4 60.94; 55.25 5.7 -13.07 0.06 16.5
Riboswitch 3DIZ 122!A:132!A G:C WC [cWW][XIX] 10.35 61.68; 55.05 6.63 -7.59 0.08 12.02
Riboswitch 3DIZ 123!A:131!A G:C WC [cWW][XIX] 10.47 56.16; 56.87 0.7 -2.14 0.09 12.2
Riboswitch 3DIZ 124!A:130!A G:C WC [cWW][XIX] 10.5 53.5; 57.71 4.21 -1.2 0.21 9.1
Riboswitch 3DIZ 125!A:129!A G:A S [tSH][XI] 10.02 93.4; 4.71 88.69 -78.33 0.32 6.73
Riboswitch 3DIZ 141!A:163!A G:G S_1 [tSH][-] 11.05 85.97; 7.94 78.03 13.68 0.08 4.79
Riboswitch 3DIZ 141!A:162!A G:A WC [cWW][VIII] 12.48 52.81; 49.01 3.8 -18.56 0.27 31.9
Riboswitch 3DIZ 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.43 158.77; 139.87 18.9 -133.53 0.4 29.08
Riboswitch 3DIZ 142!A:161!A U:G Wb [cWW][XXVIII] 10.44 63.72; 41.6 22.11 -17.4 0.33 16.82
Riboswitch 3DIZ 143!A:160!A C:G WC [cWW][XIX] 10.61 52.05; 54.5 2.45 -17.85 0.21 25.87
Riboswitch 3DIZ 144!A:159!A A:U WC [cWW][XX] 10.28 56.48; 56.78 0.3 -13.61 0.46 15.11
Riboswitch 3DIZ 145!A:158!A C:G WC [cWW][XIX] 10.47 59.82; 49.43 10.39 -14.48 0.23 19.21
Riboswitch 3DIZ 146!A:157!A G:C WC [cWW][XIX] 10.59 52.53; 55.75 3.21 -7.1 0.11 10.4
Riboswitch 3DIZ 147!A:156!A G:C WC [cWW][XIX] 10.59 56.48; 55.75 0.73 -9.19 0.09 12.67
Riboswitch 3DIZ 148!A:155!A A:U WC [cWW][XX] 10.77 51.42; 54.65 3.23 1.68 0.08 7.54
Riboswitch 3DIZ 149!A:154!A G:C WC [cWW][XIX] 10.62 54.12; 53.24 0.88 -4.24 0.06 9.78