Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DJ0 BPC Identified: 91 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DJ0 1!A:174!A G:C WC [cWW][XIX] 11.09 50.36; 47.75 2.61 -2.33 0.76 6.27
Riboswitch 3DJ0 2!A:173!A G:U Wb [cWW][XXVIII] 10.5 41.09; 67.27 26.18 -11.19 0.05 16.21
Riboswitch 3DJ0 3!A:172!A C:G WC [cWW][XIX] 10.68 51.69; 54.74 3.05 -13.08 0.17 19.6
Riboswitch 3DJ0 4!A:171!A C:G WC [cWW][XIX] 10.77 50.99; 53.69 2.7 -7.87 0.04 11.09
Riboswitch 3DJ0 5!A:170!A G:C WC [cWW][XIX] 10.63 53.21; 53.47 0.26 -9.96 0.24 11.72
Riboswitch 3DJ0 6!A:169!A A:U WC [cWW][XX] 10.68 54.76; 52.86 1.89 -9.99 0.27 15.38
Riboswitch 3DJ0 7!A:168!A C:G WC [cWW][XIX] 10.68 53.84; 54.94 1.1 -13.12 0.41 20.5
Riboswitch 3DJ0 8!A:167!A G:C WC [cWW][XIX] 10.74 53.42; 51.79 1.62 -11.08 0.34 19.26
Riboswitch 3DJ0 9!A:166!A G:C WC [cWW][XIX] 10.74 50.74; 51.32 0.58 -12.89 0.91 27.25
Riboswitch 3DJ0 10!A:165!A A:G WC [cWW][VIII] 12.73 46.21; 46.57 0.36 -8.62 0.48 17.91
Riboswitch 3DJ0 11!A:163!A G:G rH_1 [tWH][VII] 11.2 32.04; 27.22 4.83 -165.2 0.2 7.39
Riboswitch 3DJ0 12!A:79!A G:C WC [cWW][XIX] 10.86 47.76; 50.67 2.9 23.67 0.16 22.22
Riboswitch 3DJ0 14!A:81!A G:A rS [tSS][-] 8.19 86.56; 60.29 26.27 163.86 0.54 20.88
Riboswitch 3DJ0 14!A:78!A G:C WC [cWW][XIX] 10.54 52.16; 55.96 3.79 -1.97 0.16 7.45
Riboswitch 3DJ0 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.55 145.83; 140.25 5.58 -112.37 0.25 26.49
Riboswitch 3DJ0 15!A:77!A C:G WC [cWW][XIX] 10.66 51.78; 53.1 1.32 -6.19 0.19 15.48
Riboswitch 3DJ0 16!A:76!A G:C WC [cWW][XIX] 10.65 53.64; 53.65 0.0 -7.26 0.08 11.02
Riboswitch 3DJ0 17!A:75!A C:G WC [cWW][XIX] 10.65 52.55; 52.23 0.32 -7.16 0.07 11.77
Riboswitch 3DJ0 18!A:74!A C:G WC [cWW][XIX] 10.74 50.68; 54.39 3.71 -5.51 0.26 9.53
Riboswitch 3DJ0 19!A:73!A C:G WC [cWW][XIX] 10.98 49.57; 51.82 2.25 -3.51 0.06 3.05
Riboswitch 3DJ0 20!A:72!A G:A S [tSH][XI] 9.21 99.93; 6.86 93.06 21.75 0.65 23.66
Riboswitch 3DJ0 21!A:71!A A:G S [tSH][XI] 9.52 3.5; 93.94 90.44 -44.49 0.51 12.56
Riboswitch 3DJ0 22!A:70!A G:C WC [cWW][XIX] 10.84 51.55; 50.44 1.12 -0.32 0.02 2.32
Riboswitch 3DJ0 23!A:69!A A:G WC [cWW][VIII] 12.72 47.51; 45.71 1.8 2.86 0.75 10.38
Riboswitch 3DJ0 25!A:67!A G:A S [tSH][XI] 9.51 93.19; 0.76 92.43 -43.56 0.87 18.37
Riboswitch 3DJ0 26!A:66!A A:A rS* [tHH][-] 11.18 9.77; 18.24 8.47 -116.66 0.78 15.12
Riboswitch 3DJ0 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.76 80.4; 63.49 16.9 -172.82 0.47 13.19
Riboswitch 3DJ0 27!A:28!A G:U pS* [cHS][-] 6.93 140.16; 54.4 85.76 -0.38 0.1 3.44
Riboswitch 3DJ0 28!A:65!A U:A rH_1 [tWH][XXIV] 9.42 26.43; 24.52 1.91 -163.13 0.56 16.26
Riboswitch 3DJ0 29!A:64!A A:G S [tSH][XI] 9.43 6.06; 100.01 93.95 3.92 0.07 6.72
Riboswitch 3DJ0 30!A:63!A G:U Wb [cWW][XXVIII] 10.5 38.27; 66.73 28.45 -6.86 0.32 18.09
Riboswitch 3DJ0 31!A:62!A G:C WC [cWW][XIX] 10.77 52.86; 54.61 1.74 -6.91 0.24 15.27
Riboswitch 3DJ0 32!A:61!A C:G WC [cWW][XIX] 10.88 50.25; 52.24 1.99 -6.2 0.39 17.17
Riboswitch 3DJ0 33!A:60!A U:G Wb [cWW][XXVIII] 10.85 67.7; 41.59 26.11 -7.0 0.04 17.27
Riboswitch 3DJ0 34!A:59!A G:C WC [cWW][XIX] 10.74 54.94; 54.59 0.35 -4.16 0.2 9.08
Riboswitch 3DJ0 35!A:58!A U:A WC [cWW][XX] 10.67 52.52; 52.89 0.37 -3.6 0.25 8.31
Riboswitch 3DJ0 36!A:57!A C:G WC [cWW][XIX] 10.79 54.03; 57.48 3.45 -7.04 0.39 14.94
Riboswitch 3DJ0 37!A:56!A C:G WC [cWW][XIX] 10.71 53.58; 55.06 1.48 -6.36 0.13 8.94
Riboswitch 3DJ0 38!A:55!A C:G WC [cWW][XIX] 10.89 49.16; 54.26 5.1 4.73 0.11 4.72
Riboswitch 3DJ0 40!A:52!A U:U rWb [tWW][XIII] 8.6 40.83; 40.9 0.07 172.02 1.46 38.64
Riboswitch 3DJ0 41!A:54!A C:G WC [cWW][XIX] 10.93 48.52; 52.13 3.61 -3.54 0.38 13.39
Riboswitch 3DJ0 42!A:50!A A:A rH [tWH][V] 11.8 25.36; 23.62 1.74 108.19 1.3 30.19
Riboswitch 3DJ0 43!A:47!A G:A rH_2v [---][-] 13.64 20.49; 13.9 6.59 -34.12 1.01 83.68
Riboswitch 3DJ0 44!A:100!A G:C WC [cWW][XIX] 10.66 52.83; 58.5 5.67 -6.66 0.1 12.71
Riboswitch 3DJ0 45!A:99!A G:C WC [cWW][XIX] 10.66 51.73; 52.73 1.0 -1.04 0.21 9.25
Riboswitch 3DJ0 46!A:98!A G:C WC [cWW][XIX] 10.77 54.24; 50.43 3.82 2.14 0.02 1.97
Riboswitch 3DJ0 47!A:97!A A:U WC [cWW][XX] 10.46 56.46; 54.81 1.65 -1.62 0.51 14.11
Riboswitch 3DJ0 48!A:96!A G:C WC [cWW][XIX] 10.63 57.95; 53.58 4.38 -6.16 0.28 13.66
Riboswitch 3DJ0 49!A:95!A G:C WC [cWW][XIX] 10.79 53.92; 51.9 2.02 -10.75 0.56 26.64
Riboswitch 3DJ0 68!A:126!A G:A H_1 [cWH][IX] 11.01 49.87; 39.8 10.07 28.61 0.13 39.46
Riboswitch 3DJ0 69!A:129!A G:A fS(sb:O2*-N1)_1 [---][-] 9.09 104.66; 42.84 61.82 -142.28 0.85 45.41
Riboswitch 3DJ0 69!A:127!A G:A fS [tSW][X] 9.83 105.96; 9.11 96.85 -103.53 1.73 46.74
Riboswitch 3DJ0 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 5.99 106.43; 148.76 42.33 -40.62 0.68 13.43
Riboswitch 3DJ0 82!A:113!A A:U WC [cWW][XX] 10.46 52.77; 54.75 1.98 3.65 0.16 9.67
Riboswitch 3DJ0 83!A:112!A G:C WC [cWW][XIX] 10.44 53.62; 56.6 2.99 -2.86 0.3 7.97
Riboswitch 3DJ0 84!A:111!A G:C WC [cWW][XIX] 10.54 56.56; 54.62 1.93 -0.13 0.28 6.26
Riboswitch 3DJ0 85!A:109!A G:U Wb [cWW][XXVIII] 10.57 36.51; 66.46 29.95 -12.81 0.16 12.19
Riboswitch 3DJ0 86!A:108!A U:A WC [cWW][XX] 10.42 55.13; 56.4 1.26 -13.24 0.13 19.97
Riboswitch 3DJ0 87!A:107!A G:C WC [cWW][XIX] 10.49 53.46; 53.71 0.25 -8.63 0.1 13.88
Riboswitch 3DJ0 88!A:106!A C:G WC [cWW][XIX] 10.72 52.41; 54.02 1.6 -8.13 0.03 12.08
Riboswitch 3DJ0 89!A:105!A A:U WC [cWW][XX] 10.41 57.66; 56.41 1.25 -5.93 0.01 9.53
Riboswitch 3DJ0 90!A:104!A G:C WC [cWW][XIX] 10.75 55.61; 56.79 1.18 -4.54 0.08 12.51
Riboswitch 3DJ0 91!A:103!A A:U WC [cWW][XX] 10.58 57.98; 52.8 5.18 -7.53 0.15 13.82
Riboswitch 3DJ0 92!A:102!A G:C WC [cWW][XIX] 10.67 52.5; 54.03 1.52 -9.17 0.42 23.78
Riboswitch 3DJ0 93!A:101!A U:G Wb [cWW][XXVIII] 10.54 67.22; 40.51 26.71 -1.24 0.08 7.33
Riboswitch 3DJ0 94!A:98!A U:C rH_2 [---][-] 12.98 9.75; 17.58 7.83 -65.41 0.46 75.47
Riboswitch 3DJ0 94!A:97!A U:U rH_1 [tWH][-] 10.77 34.54; 26.93 7.61 -59.86 1.3 69.26
Riboswitch 3DJ0 114!A:140!A G:U Wb [cWW][XXVIII] 10.52 40.73; 64.07 23.34 -4.3 0.06 7.02
Riboswitch 3DJ0 115!A:139!A G:C WC [cWW][XIX] 10.78 49.52; 52.33 2.81 -9.35 0.39 16.53
Riboswitch 3DJ0 116!A:138!A G:A WC [cWW][VIII] 12.85 44.15; 45.98 1.83 -0.05 0.05 6.72
Riboswitch 3DJ0 117!A:137!A G:C WC [cWW][XIX] 10.82 51.96; 52.34 0.38 -11.42 0.25 11.72
Riboswitch 3DJ0 118!A:136!A G:C WC [cWW][XIX] 10.51 50.04; 55.45 5.41 -14.37 0.32 20.05
Riboswitch 3DJ0 119!A:135!A U:A WC [cWW][XX] 10.44 53.41; 57.12 3.71 -11.32 0.06 14.17
Riboswitch 3DJ0 120!A:134!A A:U WC [cWW][XX] 10.57 51.77; 52.98 1.21 -11.35 0.22 20.48
Riboswitch 3DJ0 121!A:133!A U:A WC [cWW][XX] 10.59 55.0; 56.51 1.51 -11.52 0.13 20.53
Riboswitch 3DJ0 122!A:132!A G:C WC [cWW][XIX] 10.46 59.17; 54.58 4.59 -8.43 0.15 14.15
Riboswitch 3DJ0 123!A:131!A G:C WC [cWW][XIX] 10.47 56.62; 54.05 2.57 1.78 0.13 9.34
Riboswitch 3DJ0 124!A:130!A G:C WC [cWW][XIX] 10.66 57.4; 54.86 2.53 -1.27 0.43 13.39
Riboswitch 3DJ0 125!A:129!A G:A S [tSH][XI] 10.03 94.17; 5.26 88.91 -72.74 0.47 7.57
Riboswitch 3DJ0 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.05 76.48; 37.45 39.03 -166.99 2.16 24.42
Riboswitch 3DJ0 141!A:163!A G:G S_1 [tSH][-] 11.18 83.17; 4.11 79.06 23.38 0.61 11.03
Riboswitch 3DJ0 141!A:162!A G:A WC [cWW][VIII] 12.52 51.42; 46.85 4.58 -13.19 0.34 25.01
Riboswitch 3DJ0 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.46 159.77; 139.48 20.29 -132.57 0.41 31.1
Riboswitch 3DJ0 142!A:161!A U:G Wb [cWW][XXVIII] 10.59 65.01; 39.67 25.34 -17.23 0.05 17.47
Riboswitch 3DJ0 143!A:160!A C:G WC [cWW][XIX] 10.67 50.0; 54.74 4.75 -14.67 0.77 27.57
Riboswitch 3DJ0 144!A:159!A A:U WC [cWW][XX] 10.33 54.2; 56.13 1.92 -14.83 0.08 20.73
Riboswitch 3DJ0 145!A:158!A C:G WC [cWW][XIX] 10.65 53.84; 55.0 1.16 -10.46 0.14 17.44
Riboswitch 3DJ0 146!A:157!A G:C WC [cWW][XIX] 10.63 52.06; 52.98 0.91 -2.47 0.02 5.68
Riboswitch 3DJ0 147!A:156!A G:C WC [cWW][XIX] 10.57 55.34; 56.5 1.17 -5.91 0.12 11.24
Riboswitch 3DJ0 148!A:155!A A:U WC [cWW][XX] 10.82 53.33; 50.83 2.5 -0.27 0.06 5.04
Riboswitch 3DJ0 149!A:154!A G:C WC [cWW][XIX] 10.67 54.54; 54.31 0.23 -2.4 0.15 7.75