Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DJ2 BPC Identified: 90 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3DJ2 1!A:174!A G:C WC [cWW][XIX] 10.91 51.1; 50.03 1.07 -6.02 0.42 10.03
Riboswitch 3DJ2 2!A:173!A G:U Wb [cWW][XXVIII] 10.5 41.6; 68.18 26.58 -10.11 0.0 16.12
Riboswitch 3DJ2 3!A:172!A C:G WC [cWW][XIX] 10.67 53.0; 52.78 0.21 -14.05 0.1 19.0
Riboswitch 3DJ2 4!A:171!A C:G WC [cWW][XIX] 10.71 53.63; 53.35 0.28 -9.54 0.15 13.86
Riboswitch 3DJ2 5!A:170!A G:C WC [cWW][XIX] 10.72 56.11; 53.36 2.75 -8.42 0.11 10.96
Riboswitch 3DJ2 6!A:169!A A:U WC [cWW][XX] 10.76 53.75; 53.27 0.48 -10.96 0.28 16.48
Riboswitch 3DJ2 7!A:168!A C:G WC [cWW][XIX] 10.53 55.32; 54.64 0.68 -13.36 0.32 23.01
Riboswitch 3DJ2 8!A:167!A G:C WC [cWW][XIX] 10.6 53.91; 52.71 1.2 -12.76 0.49 21.45
Riboswitch 3DJ2 9!A:166!A G:C WC [cWW][XIX] 10.8 51.71; 51.87 0.17 -13.42 1.02 28.74
Riboswitch 3DJ2 10!A:165!A A:G WC [cWW][VIII] 12.83 46.67; 46.3 0.37 -9.35 0.47 18.44
Riboswitch 3DJ2 11!A:163!A G:G rH_1 [tWH][VII] 11.16 33.88; 27.89 5.99 -163.48 0.06 8.04
Riboswitch 3DJ2 12!A:79!A G:C WC [cWW][XIX] 10.85 48.75; 48.88 0.14 23.86 0.05 26.01
Riboswitch 3DJ2 14!A:81!A G:A rS [tSS][-] 8.14 85.43; 61.28 24.15 160.84 0.68 26.34
Riboswitch 3DJ2 14!A:78!A G:C WC [cWW][XIX] 10.56 51.05; 56.94 5.89 -4.52 0.04 9.88
Riboswitch 3DJ2 15!A:82!A C:A rS(ss:O2*-O2*)_2 [---][-] 5.53 145.55; 140.26 5.29 -108.49 0.47 27.73
Riboswitch 3DJ2 15!A:77!A C:G WC [cWW][XIX] 10.66 51.41; 53.89 2.48 -6.47 0.17 15.19
Riboswitch 3DJ2 16!A:76!A G:C WC [cWW][XIX] 10.74 51.81; 53.71 1.9 -6.92 0.01 11.96
Riboswitch 3DJ2 17!A:75!A C:G WC [cWW][XIX] 10.69 51.58; 50.78 0.8 -8.82 0.15 14.83
Riboswitch 3DJ2 18!A:74!A C:G WC [cWW][XIX] 10.7 53.63; 53.67 0.03 -5.57 0.02 8.05
Riboswitch 3DJ2 19!A:73!A C:G WC [cWW][XIX] 10.9 51.63; 51.06 0.57 -3.9 0.0 3.37
Riboswitch 3DJ2 20!A:72!A G:A S [tSH][XI] 9.17 99.06; 8.25 90.81 8.77 0.95 28.16
Riboswitch 3DJ2 21!A:71!A A:G S [tSH][XI] 9.61 2.92; 93.9 90.98 -28.87 0.37 11.51
Riboswitch 3DJ2 22!A:70!A G:C WC [cWW][XIX] 10.87 51.03; 52.05 1.02 -1.95 0.02 4.51
Riboswitch 3DJ2 23!A:69!A A:G WC [cWW][VIII] 12.77 45.97; 46.25 0.28 2.22 0.83 11.31
Riboswitch 3DJ2 25!A:67!A G:A S [tSH][XI] 9.54 91.99; 0.67 91.32 89.74 0.54 16.1
Riboswitch 3DJ2 26!A:66!A A:A rS* [tHH][-] 11.03 10.75; 18.28 7.53 -117.03 0.8 16.64
Riboswitch 3DJ2 27!A:65!A G:A S(bp:N1-O2P)_3 [---][-] 10.87 82.61; 62.71 19.9 -172.04 0.34 12.33
Riboswitch 3DJ2 27!A:28!A G:U pS* [cHS][-] 6.85 141.91; 55.32 86.59 2.77 0.05 4.24
Riboswitch 3DJ2 28!A:65!A U:A rH_1 [tWH][XXIV] 9.45 26.74; 24.52 2.22 -166.21 0.53 15.71
Riboswitch 3DJ2 29!A:64!A A:G S [tSH][XI] 9.44 7.54; 98.84 91.3 -1.53 0.13 8.18
Riboswitch 3DJ2 30!A:63!A G:U Wb [cWW][XXVIII] 10.47 40.34; 67.33 26.98 -7.75 0.12 15.69
Riboswitch 3DJ2 31!A:62!A G:C WC [cWW][XIX] 10.69 53.49; 56.46 2.98 -5.75 0.54 14.66
Riboswitch 3DJ2 32!A:61!A C:G WC [cWW][XIX] 10.79 54.52; 48.75 5.77 -7.14 0.06 14.62
Riboswitch 3DJ2 33!A:60!A U:G Wb [cWW][XXVIII] 10.75 64.56; 45.27 19.29 -10.22 0.17 17.67
Riboswitch 3DJ2 34!A:59!A G:C WC [cWW][XIX] 10.68 57.45; 51.03 6.42 -7.14 0.59 19.21
Riboswitch 3DJ2 35!A:58!A U:A WC [cWW][XX] 10.6 55.18; 54.21 0.97 -5.93 0.29 11.02
Riboswitch 3DJ2 36!A:57!A C:G WC [cWW][XIX] 10.72 51.78; 60.19 8.41 -4.56 0.17 16.16
Riboswitch 3DJ2 37!A:56!A C:G WC [cWW][XIX] 10.83 54.66; 58.15 3.49 -2.7 0.27 6.67
Riboswitch 3DJ2 38!A:55!A C:G WC [cWW][XIX] 10.8 53.01; 54.72 1.7 1.25 0.15 4.53
Riboswitch 3DJ2 40!A:52!A U:U rWb [tWW][XIII] 8.82 39.09; 40.32 1.23 176.43 0.75 18.96
Riboswitch 3DJ2 41!A:54!A C:G WC [cWW][XIX] 10.89 48.13; 54.45 6.33 -3.32 0.24 18.09
Riboswitch 3DJ2 42!A:50!A A:A rH [tWH][V] 11.94 25.0; 23.54 1.46 115.88 1.16 28.57
Riboswitch 3DJ2 43!A:47!A G:A rH_2v [---][-] 13.34 25.02; 15.45 9.57 -42.19 0.82 75.85
Riboswitch 3DJ2 44!A:100!A G:C WC [cWW][XIX] 10.62 51.91; 56.44 4.53 -7.6 0.03 12.09
Riboswitch 3DJ2 45!A:99!A G:C WC [cWW][XIX] 10.72 50.78; 54.11 3.34 1.77 0.05 4.43
Riboswitch 3DJ2 46!A:98!A G:C WC [cWW][XIX] 10.66 53.41; 53.84 0.42 0.8 0.12 7.45
Riboswitch 3DJ2 47!A:97!A A:U WC [cWW][XX] 10.48 56.84; 55.1 1.75 -3.13 0.45 15.46
Riboswitch 3DJ2 48!A:96!A G:C WC [cWW][XIX] 10.67 56.97; 54.96 2.01 -7.9 0.29 18.93
Riboswitch 3DJ2 49!A:95!A G:C WC [cWW][XIX] 10.68 54.02; 51.98 2.04 -13.25 0.78 30.57
Riboswitch 3DJ2 68!A:126!A G:A H_1 [cWH][IX] 10.86 51.34; 39.63 11.71 28.73 0.28 39.99
Riboswitch 3DJ2 69!A:129!A G:A rS(sb:O2*-N1)_2 [---][-] 8.93 104.69; 43.09 61.6 -141.33 0.72 45.36
Riboswitch 3DJ2 69!A:127!A G:A fS [tSW][X] 9.81 105.8; 9.78 96.02 -96.53 1.8 49.45
Riboswitch 3DJ2 78!A:81!A C:A rpS(bs:O2-O2*) [cSS][-] 5.99 106.81; 149.57 42.76 -43.57 0.71 16.46
Riboswitch 3DJ2 82!A:113!A A:U WC [cWW][XX] 10.41 53.54; 56.08 2.54 3.68 0.21 11.56
Riboswitch 3DJ2 83!A:112!A G:C WC [cWW][XIX] 10.46 56.17; 56.23 0.06 -3.14 0.24 8.16
Riboswitch 3DJ2 84!A:111!A G:C WC [cWW][XIX] 10.73 55.86; 53.27 2.59 -1.1 0.01 6.29
Riboswitch 3DJ2 85!A:109!A G:U Wb [cWW][XXVIII] 10.47 39.86; 66.17 26.31 -11.59 0.13 12.52
Riboswitch 3DJ2 86!A:108!A U:A WC [cWW][XX] 10.45 54.52; 55.14 0.61 -12.06 0.22 19.4
Riboswitch 3DJ2 87!A:107!A G:C WC [cWW][XIX] 10.58 54.53; 55.65 1.11 -8.4 0.12 14.5
Riboswitch 3DJ2 88!A:106!A C:G WC [cWW][XIX] 10.71 54.19; 50.93 3.26 -7.54 0.02 11.49
Riboswitch 3DJ2 89!A:105!A A:U WC [cWW][XX] 10.4 58.77; 57.19 1.58 -5.03 0.04 9.06
Riboswitch 3DJ2 90!A:104!A G:C WC [cWW][XIX] 10.62 53.84; 53.91 0.07 -3.52 0.02 14.9
Riboswitch 3DJ2 91!A:103!A A:U WC [cWW][XX] 10.31 57.87; 55.56 2.31 -7.31 0.21 13.66
Riboswitch 3DJ2 92!A:102!A G:C WC [cWW][XIX] 10.62 52.95; 51.11 1.84 -9.68 0.43 25.37
Riboswitch 3DJ2 93!A:101!A U:G Wb [cWW][XXVIII] 10.62 66.08; 38.93 27.15 -3.82 0.14 7.64
Riboswitch 3DJ2 94!A:97!A U:U rH_1 [tWH][-] 10.88 34.68; 25.16 9.53 -66.75 1.41 69.51
Riboswitch 3DJ2 114!A:140!A G:U Wb [cWW][XXVIII] 10.44 41.12; 64.98 23.86 -7.5 0.12 9.76
Riboswitch 3DJ2 115!A:139!A G:C WC [cWW][XIX] 10.65 50.06; 53.12 3.06 -10.6 0.55 21.03
Riboswitch 3DJ2 116!A:138!A G:A WC [cWW][VIII] 12.88 46.55; 46.18 0.37 -1.42 0.08 7.95
Riboswitch 3DJ2 117!A:137!A G:C WC [cWW][XIX] 10.73 52.03; 55.01 2.98 -12.25 0.2 13.34
Riboswitch 3DJ2 118!A:136!A G:C WC [cWW][XIX] 10.61 52.16; 55.24 3.08 -16.65 0.37 24.4
Riboswitch 3DJ2 119!A:135!A U:A WC [cWW][XX] 10.55 52.61; 55.44 2.84 -12.8 0.03 18.04
Riboswitch 3DJ2 120!A:134!A A:U WC [cWW][XX] 10.45 53.96; 56.04 2.08 -9.76 0.08 13.72
Riboswitch 3DJ2 121!A:133!A U:A WC [cWW][XX] 10.54 53.96; 55.93 1.97 -11.32 0.06 17.43
Riboswitch 3DJ2 122!A:132!A G:C WC [cWW][XIX] 10.54 57.75; 54.66 3.09 -6.86 0.15 13.33
Riboswitch 3DJ2 123!A:131!A G:C WC [cWW][XIX] 10.59 53.14; 54.71 1.56 -1.94 0.1 14.72
Riboswitch 3DJ2 124!A:130!A G:C WC [cWW][XIX] 10.58 56.93; 54.52 2.41 -2.72 0.56 14.28
Riboswitch 3DJ2 125!A:129!A G:A S [tSH][XI] 9.94 93.63; 4.22 89.4 -70.43 0.21 7.51
Riboswitch 3DJ2 125!A:127!A G:A S(sb:O2*-N7) [---][-] 7.08 75.15; 37.73 37.43 -169.22 2.42 23.74
Riboswitch 3DJ2 141!A:163!A G:G S_1 [tSH][-] 11.23 84.51; 4.98 79.53 27.84 0.45 10.66
Riboswitch 3DJ2 141!A:162!A G:A WC [cWW][VIII] 12.55 52.66; 49.53 3.12 -17.29 0.27 28.97
Riboswitch 3DJ2 142!A:166!A U:C rS(ss:O2*-O2*) [---][-] 5.48 158.65; 139.38 19.27 -131.14 0.32 32.14
Riboswitch 3DJ2 142!A:161!A U:G Wb [cWW][XXVIII] 10.61 63.81; 39.21 24.6 -15.59 0.21 18.03
Riboswitch 3DJ2 143!A:160!A C:G WC [cWW][XIX] 10.65 51.71; 53.92 2.21 -14.7 0.84 27.8
Riboswitch 3DJ2 144!A:159!A A:U WC [cWW][XX] 10.33 55.25; 53.75 1.5 -14.72 0.25 21.67
Riboswitch 3DJ2 145!A:158!A C:G WC [cWW][XIX] 10.53 56.19; 53.8 2.39 -9.58 0.19 18.94
Riboswitch 3DJ2 146!A:157!A G:C WC [cWW][XIX] 10.73 52.47; 51.42 1.06 -5.12 0.03 8.79
Riboswitch 3DJ2 147!A:156!A G:C WC [cWW][XIX] 10.61 57.34; 56.11 1.23 -6.95 0.13 11.19
Riboswitch 3DJ2 148!A:155!A A:U WC [cWW][XX] 10.92 53.61; 53.08 0.54 -2.38 0.03 5.36
Riboswitch 3DJ2 149!A:154!A G:C WC [cWW][XIX] 10.69 56.77; 53.11 3.66 -3.14 0.11 7.94