Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3DKN BPC Identified: 34 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 3DKN 53!D:66!D C:G WC [cWW][XIX] 10.83 52.82; 51.56 1.26 -7.84 0.22 6.66
rRNA 3DKN 54!D:69!D G:A rS [tSS][-] 8.09 81.2; 60.24 20.97 154.88 1.15 42.74
rRNA 3DKN 54!D:65!D G:C WC [cWW][XIX] 10.63 53.23; 53.8 0.57 -24.47 0.48 31.19
rRNA 3DKN 55!D:64!D U:G Wb [cWW][XXVIII] 10.3 69.23; 42.68 26.55 -18.66 0.14 24.29
rRNA 3DKN 56!D:84!E G:G H_1 [cWH][VI] 11.41 68.45; 27.4 41.05 -1.92 0.28 13.41
rRNA 3DKN 56!D:62!D G:C rH* [---][-] 14.36 23.8; 6.35 17.44 -37.48 0.43 22.09
rRNA 3DKN 57!D:89!E C:G WC [cWW][XIX] 10.57 53.71; 58.04 4.33 -10.33 0.01 11.43
rRNA 3DKN 58!D:88!E C:G WC [cWW][XIX] 10.4 58.07; 56.92 1.15 -3.95 0.21 9.94
rRNA 3DKN 59!D:60!D A:A pS [cSH][-] 6.87 143.23; 30.37 112.86 -26.41 1.0 13.53
rRNA 3DKN 60!D:86!E A:A rWb* [tWW][I] 13.56 27.39; 33.91 6.52 149.88 0.19 21.54
rRNA 3DKN 61!D:85!E G:C WC [cWW][XIX] 10.74 53.21; 53.43 0.22 -10.78 0.03 12.16
rRNA 3DKN 62!D:84!E C:G WC [cWW][XIX] 10.49 58.06; 54.79 3.28 -6.46 0.03 16.41
rRNA 3DKN 63!D:70!D U:A H_1 [cWH][XXIII] 8.26 59.95; 55.16 4.79 -11.53 0.37 20.78
rRNA 3DKN 65!D:69!D C:A rpS(bs:O2-O2*) [cSS][-] 5.32 101.5; 160.89 59.38 -31.17 2.21 18.7
rRNA 3DKN 66!D:67!D G:A pfS_1 [---][-] 7.4 133.02; 80.28 52.75 19.55 0.36 23.95
rRNA 3DKN 68!D:71!D U:G pfS(sb:O2*-N2) [---][-] 8.21 120.3; 95.47 24.83 26.14 2.71 43.32
rRNA 3DKN 80!E:94!E A:G rS [tSS][-] 8.34 54.22; 91.04 36.81 139.56 0.7 46.78
rRNA 3DKN 81!E:93!E G:C WC [cWW][XIX] 10.53 53.88; 56.34 2.45 2.19 0.02 4.44
rRNA 3DKN 82!E:92!E C:G WC [cWW][XIX] 10.75 53.47; 55.07 1.6 -0.72 0.08 3.21
rRNA 3DKN 83!E:91!E C:G WC [cWW][XIX] 10.62 56.99; 55.33 1.66 9.58 0.36 13.48
rRNA 3DKN 1418!F:1446!F U:U rWb* [tWW][XII] 11.12 45.87; 12.94 32.93 67.28 0.1 31.58
rRNA 3DKN 1418!F:1445!F U:G fS_1v [---][-] 10.12 81.54; 39.31 42.24 83.08 1.59 89.79
rRNA 3DKN 1420!F:1444!F C:G WC [cWW][XIX] 10.93 48.47; 53.5 5.03 -8.59 0.32 13.0
rRNA 3DKN 1421!F:1443!F C:G WC [cWW][XIX] 10.81 52.22; 53.17 0.95 -12.65 0.17 15.9
rRNA 3DKN 1422!F:1442!F U:A WC [cWW][XX] 10.77 53.61; 53.25 0.37 -9.24 0.01 12.39
rRNA 3DKN 1423!F:1441!F C:G WC [cWW][XIX] 10.6 55.75; 55.83 0.08 -5.17 0.01 11.53
rRNA 3DKN 1424!F:1440!F A:U WC [cWW][XX] 10.54 56.53; 56.92 0.38 -12.31 0.04 17.58
rRNA 3DKN 1425!F:1439!F G:C WC [cWW][XIX] 10.86 52.57; 50.8 1.76 -19.67 0.77 29.23
rRNA 3DKN 1426!F:1437!F C:A rH_1 [rWH][XXV] 11.25 26.08; 4.12 21.96 173.02 0.02 3.03
rRNA 3DKN 1426!F:1428!F C:C pS [cSH][-] 8.93 108.47; 28.09 80.38 -4.8 0.33 39.78
rRNA 3DKN 1428!F:1439!F C:C pfS [cSW][-] 7.65 38.56; 136.21 97.66 -26.56 0.14 28.44
rRNA 3DKN 1429!F:1437!F U:A WC [cWW][XX] 10.32 57.48; 57.35 0.13 -17.72 0.1 23.83
rRNA 3DKN 1430!F:1436!F G:C WC [cWW][XIX] 10.71 54.26; 54.11 0.16 0.68 0.41 11.02
rRNA 3DKN 1437!F:1438!F A:G rS(bs:N2-O2*) [---][-] 6.98 121.15; 96.68 24.47 -144.05 0.48 55.08