Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3DW5
BPC Identified: 13
Ambiguities: 0
| rRNA |
3DW5 |
2648!A:2672!A |
G:U |
Wb [cWW][XXVIII] |
10.71 |
42.99; 67.11 |
24.12 |
-5.43 |
0.29 |
7.77 |
| rRNA |
3DW5 |
2649!A:2671!A |
C:G |
WC [cWW][XIX] |
10.57 |
54.48; 54.88 |
0.4 |
-12.61 |
0.28 |
19.7 |
| rRNA |
3DW5 |
2650!A:2670!A |
U:A |
WC [cWW][XX] |
10.72 |
51.28; 55.26 |
3.98 |
-10.52 |
0.19 |
13.56 |
| rRNA |
3DW5 |
2651!A:2669!A |
C:G |
WC [cWW][XIX] |
10.51 |
57.85; 55.64 |
2.21 |
-14.04 |
0.27 |
18.54 |
| rRNA |
3DW5 |
2652!A:2668!A |
C:G |
WC [cWW][XIX] |
10.75 |
54.96; 51.12 |
3.84 |
-9.63 |
0.05 |
12.67 |
| rRNA |
3DW5 |
2653!A:2667!A |
U:C |
sWC [---][-] |
10.78 |
80.97; 15.17 |
65.8 |
-4.62 |
0.3 |
14.25 |
| rRNA |
3DW5 |
2654!A:2666!A |
A:C |
rS* [tHH][-] |
12.6 |
11.83; 38.38 |
26.55 |
-62.3 |
1.55 |
26.58 |
| rRNA |
3DW5 |
2655!A:2665!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.69 |
82.31; 60.97 |
21.34 |
-171.21 |
1.17 |
20.92 |
| rRNA |
3DW5 |
2655!A:2656!A |
G:U |
pS* [cHS][-] |
6.65 |
143.84; 50.2 |
93.64 |
9.87 |
0.05 |
4.37 |
| rRNA |
3DW5 |
2656!A:2665!A |
U:A |
rH_1 [tWH][XXIV] |
9.62 |
29.86; 23.21 |
6.65 |
-172.76 |
0.86 |
20.52 |
| rRNA |
3DW5 |
2657!A:2664!A |
A:G |
S [tSH][XI] |
9.49 |
7.91; 98.64 |
90.73 |
-0.79 |
0.13 |
4.42 |
| rRNA |
3DW5 |
2658!A:2663!A |
C:G |
WC [cWW][XIX] |
10.59 |
56.22; 55.69 |
0.53 |
2.65 |
0.17 |
6.79 |
| rRNA |
3DW5 |
2659!A:2662!A |
G:A |
S [tSH][XI] |
9.25 |
99.43; 12.39 |
87.04 |
-111.17 |
0.59 |
18.62 |