Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3E5C
BPC Identified: 25
Ambiguities: 0
| Riboswitch |
3E5C |
1!A:53!A |
G:U |
Wb [cWW][XXVIII] |
10.55 |
39.41; 64.9 |
25.49 |
-9.39 |
0.14 |
9.69 |
| Riboswitch |
3E5C |
2!A:52!A |
U:A |
WC [cWW][XX] |
10.42 |
53.39; 57.03 |
3.65 |
-14.27 |
0.28 |
18.96 |
| Riboswitch |
3E5C |
3!A:51!A |
U:A |
WC [cWW][XX] |
10.29 |
56.03; 58.13 |
2.1 |
-11.64 |
0.38 |
18.02 |
| Riboswitch |
3E5C |
4!A:50!A |
C:G |
WC [cWW][XIX] |
10.63 |
55.99; 55.24 |
0.75 |
-8.42 |
0.23 |
15.72 |
| Riboswitch |
3E5C |
5!A:49!A |
C:G |
WC [cWW][XIX] |
10.64 |
56.61; 55.7 |
0.91 |
-2.86 |
0.31 |
11.47 |
| Riboswitch |
3E5C |
6!A:48!A |
C:G |
WC [cWW][XIX] |
10.48 |
58.38; 52.97 |
5.4 |
1.12 |
0.26 |
15.25 |
| Riboswitch |
3E5C |
8!A:36!A |
A:G |
S [tSH][XI] |
8.45 |
23.47; 108.86 |
85.4 |
-31.72 |
0.43 |
35.14 |
| Riboswitch |
3E5C |
9!A:35!A |
A:U |
WC [cWW][XX] |
10.12 |
59.9; 59.95 |
0.05 |
2.56 |
0.62 |
14.97 |
| Riboswitch |
3E5C |
10!A:34!A |
A:U |
WC [cWW][XX] |
10.6 |
54.53; 53.82 |
0.71 |
-0.08 |
0.02 |
3.28 |
| Riboswitch |
3E5C |
11!A:33!A |
G:C |
WC [cWW][XIX] |
10.68 |
56.36; 54.31 |
2.05 |
-1.78 |
0.16 |
7.68 |
| Riboswitch |
3E5C |
12!A:32!A |
G:C |
WC [cWW][XIX] |
10.57 |
57.81; 55.37 |
2.44 |
-2.25 |
0.1 |
8.98 |
| Riboswitch |
3E5C |
13!A:28!A |
A:G |
WC [cWW][VIII] |
12.8 |
46.21; 50.15 |
3.94 |
-17.41 |
0.22 |
21.31 |
| Riboswitch |
3E5C |
14!A:27!A |
U:A |
WC [cWW][XX] |
10.58 |
58.48; 50.3 |
8.18 |
-12.81 |
0.06 |
15.88 |
| Riboswitch |
3E5C |
15!A:26!A |
G:C |
WC [cWW][XIX] |
10.16 |
51.52; 62.74 |
11.22 |
-12.92 |
0.16 |
16.8 |
| Riboswitch |
3E5C |
16!A:25!A |
G:C |
WC [cWW][XIX] |
10.18 |
53.51; 63.07 |
9.56 |
-8.46 |
0.34 |
16.59 |
| Riboswitch |
3E5C |
17!A:24!A |
C:G |
WC [cWW][XIX] |
10.72 |
52.81; 50.13 |
2.67 |
-9.03 |
0.12 |
13.11 |
| Riboswitch |
3E5C |
18!A:23!A |
G:C |
WC [cWW][XIX] |
10.71 |
55.96; 53.89 |
2.07 |
0.83 |
0.04 |
1.01 |
| Riboswitch |
3E5C |
19!A:22!A |
G:A |
S [tSH][XI] |
9.53 |
91.48; 8.2 |
83.27 |
-85.29 |
0.24 |
14.56 |
| Riboswitch |
3E5C |
19!A:21!A |
G:A |
S(sb:O2*-N7) [---][-] |
7.99 |
81.51; 36.37 |
45.13 |
-175.62 |
2.65 |
22.0 |
| Riboswitch |
3E5C |
31!A:36!A |
G:G |
rH_1 [tWH][VII] |
11.14 |
30.11; 27.31 |
2.8 |
-133.4 |
0.04 |
24.35 |
| Riboswitch |
3E5C |
38!A:48!A |
A:G |
fS [tSW][X] |
10.28 |
11.01; 98.43 |
87.43 |
-101.67 |
1.76 |
51.93 |
| Riboswitch |
3E5C |
39!A:48!A |
A:G |
rS(sb:O2*-N1)_1 [---][-] |
8.74 |
42.85; 104.57 |
61.72 |
-144.67 |
0.01 |
48.44 |
| Riboswitch |
3E5C |
40!A:47!A |
C:G |
WC [cWW][XIX] |
10.49 |
56.41; 54.39 |
2.03 |
-4.26 |
0.14 |
11.57 |
| Riboswitch |
3E5C |
41!A:46!A |
C:G |
WC [cWW][XIX] |
10.65 |
54.92; 51.39 |
3.53 |
2.59 |
0.02 |
1.49 |
| Riboswitch |
3E5C |
42!A:45!A |
G:A |
S [tSH][XI] |
10.42 |
81.76; 20.46 |
61.3 |
-145.2 |
0.43 |
11.96 |