Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3E5E
BPC Identified: 25
Ambiguities: 0
| Riboswitch |
3E5E |
1!A:53!A |
G:U |
Wb [cWW][XXVIII] |
10.54 |
39.18; 63.98 |
24.8 |
-7.69 |
0.23 |
7.88 |
| Riboswitch |
3E5E |
2!A:52!A |
U:A |
WC [cWW][XX] |
10.4 |
54.12; 54.42 |
0.3 |
-11.93 |
0.23 |
17.89 |
| Riboswitch |
3E5E |
3!A:51!A |
U:A |
WC [cWW][XX] |
10.38 |
54.44; 57.3 |
2.86 |
-9.2 |
0.05 |
10.01 |
| Riboswitch |
3E5E |
4!A:50!A |
C:G |
WC [cWW][XIX] |
10.55 |
54.72; 55.18 |
0.45 |
-9.23 |
0.24 |
14.95 |
| Riboswitch |
3E5E |
5!A:49!A |
C:G |
WC [cWW][XIX] |
10.54 |
53.77; 54.84 |
1.07 |
-4.29 |
0.38 |
9.33 |
| Riboswitch |
3E5E |
6!A:48!A |
C:G |
WC [cWW][XIX] |
10.49 |
54.68; 51.4 |
3.27 |
-1.78 |
0.27 |
11.29 |
| Riboswitch |
3E5E |
8!A:36!A |
A:G |
S [tSH][XI] |
8.51 |
21.57; 107.04 |
85.47 |
-35.01 |
0.36 |
31.77 |
| Riboswitch |
3E5E |
9!A:35!A |
A:U |
WC [cWW][XX] |
10.07 |
55.38; 59.58 |
4.19 |
-0.44 |
0.34 |
10.14 |
| Riboswitch |
3E5E |
10!A:34!A |
A:U |
WC [cWW][XX] |
10.48 |
52.45; 53.89 |
1.44 |
0.23 |
0.35 |
5.14 |
| Riboswitch |
3E5E |
11!A:33!A |
G:C |
WC [cWW][XIX] |
10.65 |
55.87; 54.03 |
1.84 |
0.49 |
0.13 |
7.79 |
| Riboswitch |
3E5E |
12!A:32!A |
G:C |
WC [cWW][XIX] |
10.74 |
56.14; 54.81 |
1.34 |
-3.7 |
0.16 |
4.65 |
| Riboswitch |
3E5E |
13!A:28!A |
A:G |
WC [cWW][VIII] |
12.98 |
46.91; 45.2 |
1.71 |
-13.98 |
0.2 |
19.26 |
| Riboswitch |
3E5E |
14!A:27!A |
U:A |
WC [cWW][XX] |
10.52 |
61.67; 49.44 |
12.22 |
-12.09 |
0.3 |
12.6 |
| Riboswitch |
3E5E |
15!A:26!A |
G:C |
Wb [---][-] |
10.17 |
50.98; 66.45 |
15.47 |
-15.18 |
0.56 |
14.86 |
| Riboswitch |
3E5E |
16!A:25!A |
G:C |
WC [cWW][XIX] |
10.36 |
49.5; 61.48 |
11.99 |
-8.73 |
0.11 |
11.14 |
| Riboswitch |
3E5E |
17!A:24!A |
C:G |
WC [cWW][XIX] |
11.02 |
49.42; 49.34 |
0.07 |
-9.82 |
0.03 |
12.62 |
| Riboswitch |
3E5E |
18!A:23!A |
G:C |
WC [cWW][XIX] |
10.8 |
52.99; 51.65 |
1.34 |
-2.82 |
0.15 |
2.35 |
| Riboswitch |
3E5E |
19!A:22!A |
G:A |
S [tSH][XI] |
9.39 |
93.77; 9.19 |
84.57 |
-79.56 |
0.0 |
18.56 |
| Riboswitch |
3E5E |
19!A:21!A |
G:A |
S(sb:O2*-N7) [---][-] |
7.59 |
84.55; 34.19 |
50.36 |
-175.61 |
1.93 |
24.65 |
| Riboswitch |
3E5E |
31!A:36!A |
G:G |
rH_1 [tWH][VII] |
11.16 |
31.07; 25.59 |
5.48 |
-147.66 |
0.06 |
16.22 |
| Riboswitch |
3E5E |
38!A:48!A |
A:G |
fS [tSW][X] |
10.33 |
12.26; 97.82 |
85.57 |
-101.92 |
1.81 |
53.71 |
| Riboswitch |
3E5E |
39!A:48!A |
A:G |
fS(sb:O2*-N1)_1 [---][-] |
8.77 |
41.77; 102.79 |
61.02 |
-148.56 |
0.22 |
46.01 |
| Riboswitch |
3E5E |
40!A:47!A |
C:G |
WC [cWW][XIX] |
10.5 |
54.87; 52.72 |
2.15 |
-1.1 |
0.1 |
10.62 |
| Riboswitch |
3E5E |
41!A:46!A |
C:G |
WC [cWW][XIX] |
10.66 |
51.13; 50.22 |
0.91 |
3.26 |
0.04 |
3.75 |
| Riboswitch |
3E5E |
42!A:45!A |
G:A |
S [tSH][XI] |
10.49 |
81.68; 19.87 |
61.81 |
-148.6 |
0.77 |
8.45 |