Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3EPH BPC Identified: 60 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3EPH 2!E:71!E C:G WC [cWW][XIX] 10.68 52.35; 53.88 1.52 -18.09 0.78 31.21
tRNA 3EPH 3!E:70!E U:A WC [cWW][XX] 10.77 52.62; 54.03 1.41 -9.92 0.71 23.49
tRNA 3EPH 4!E:69!E C:G WC [cWW][XIX] 10.48 59.07; 56.91 2.16 -11.27 0.33 25.28
tRNA 3EPH 5!E:68!E G:C WC [cWW][XIX] 10.52 60.23; 59.79 0.45 -10.94 0.24 18.66
tRNA 3EPH 6!E:67!E U:G WC [---][-] 10.12 61.9; 53.22 8.68 -10.16 0.02 17.5
tRNA 3EPH 7!E:66!E A:U WC [cWW][XX] 9.96 63.51; 58.98 4.52 -17.64 0.33 24.5
tRNA 3EPH 8!E:21!E U:A fS(sb:O2*-N1) [tSW][-] 8.55 99.14; 53.97 45.18 155.88 0.24 15.64
tRNA 3EPH 8!E:14!E U:A rH_1 [tWH][XXIV] 9.47 30.82; 25.51 5.32 -163.39 0.07 9.53
tRNA 3EPH 9!E:23!E G:C rS*_1 [tHH][-] 12.34 4.8; 11.78 6.98 156.92 0.06 3.61
tRNA 3EPH 10!E:25!E G:C WC [cWW][XIX] 10.37 54.8; 59.9 5.1 -1.15 0.04 5.13
tRNA 3EPH 11!E:24!E C:G WC [cWW][XIX] 10.68 54.1; 54.46 0.36 -9.91 0.18 10.93
tRNA 3EPH 12!E:23!E G:C WC [cWW][XIX] 10.74 54.74; 54.73 0.0 -7.99 0.57 18.73
tRNA 3EPH 13!E:22!E C:G WC [cWW][XIX] 10.69 56.47; 52.2 4.27 -9.31 0.09 8.32
tRNA 3EPH 14!E:21!E A:A pfS [cSW][-] 10.23 25.94; 107.95 82.01 -30.04 1.06 24.44
tRNA 3EPH 15!E:48!E G:C rWb [tWW][XXII] 10.54 39.19; 59.38 20.19 156.12 0.04 16.85
tRNA 3EPH 18!E:55!E G:U fS_2 [---][-] 8.48 40.1; 112.62 72.51 -115.82 0.3 33.21
tRNA 3EPH 19!E:56!E G:C WC [cWW][XIX] 10.04 68.04; 51.21 16.83 -32.55 1.54 68.39
tRNA 3EPH 22!E:46!E G:G rH_1 [tWH][VII] 10.96 31.41; 36.99 5.59 169.76 0.47 10.79
tRNA 3EPH 27!E:43!E G:U WC [---][-] 10.39 55.03; 64.2 9.18 -10.35 0.49 17.87
tRNA 3EPH 28!E:42!E C:G WC [cWW][XIX] 10.53 56.23; 56.33 0.11 -2.08 0.04 15.55
tRNA 3EPH 29!E:41!E A:U WC [cWW][XX] 9.93 62.54; 60.85 1.69 -7.45 0.1 13.87
tRNA 3EPH 30!E:40!E G:C WC [cWW][XIX] 10.53 56.77; 59.99 3.23 5.2 0.18 14.94
tRNA 3EPH 31!E:39!E A:U WC [cWW][XX] 10.27 61.32; 57.62 3.7 -2.26 0.46 11.12
tRNA 3EPH 32!E:38!E U:A sWC [---][-] 11.1 83.46; 33.99 49.47 12.24 0.09 19.89
tRNA 3EPH 49!E:65!E C:G WC [cWW][XIX] 10.87 53.59; 53.16 0.43 -9.36 0.01 13.4
tRNA 3EPH 50!E:64!E U:A WC [cWW][XX] 10.56 54.95; 56.78 1.84 -3.9 0.25 8.77
tRNA 3EPH 51!E:63!E U:G WC [---][-] 10.3 61.82; 53.66 8.17 -4.71 0.06 10.39
tRNA 3EPH 52!E:62!E A:U WC [cWW][XX] 10.53 55.89; 54.15 1.74 0.57 0.29 13.33
tRNA 3EPH 53!E:61!E G:C WC [cWW][XIX] 10.76 53.35; 54.2 0.85 -9.87 0.19 13.16
tRNA 3EPH 54!E:58!E U:A rH_1 [tWH][XXIV] 10.37 27.72; 11.63 16.09 -142.06 0.53 17.87
tRNA 3EPH 55!E:57!E U:G S(sb:O2*-N7)_1 [---][-] 6.55 81.4; 38.93 42.47 -167.71 0.91 37.47
tRNA 3EPH 3!F:70!F U:A Wb* [---][-] 10.66 48.69; 70.07 21.38 2.36 0.33 6.79
tRNA 3EPH 4!F:69!F C:G WC [cWW][XIX] 11.01 42.12; 58.77 16.65 3.37 0.66 4.61
tRNA 3EPH 5!F:68!F G:C WC [cWW][XIX] 10.62 53.84; 52.91 0.93 -18.35 0.24 20.44
tRNA 3EPH 7!F:66!F A:U WC [cWW][XX] 11.23 47.4; 47.36 0.04 -31.44 0.28 39.32
tRNA 3EPH 8!F:14!F U:A rH_1 [tWH][XXIV] 9.41 32.6; 26.1 6.5 -179.55 0.14 3.19
tRNA 3EPH 9!F:23!F G:C rS*_2 [---][-] 12.43 11.84; 4.38 7.46 -96.19 0.17 11.24
tRNA 3EPH 10!F:25!F G:C WC [cWW][XIX] 10.53 54.09; 54.71 0.62 -13.8 0.18 14.52
tRNA 3EPH 11!F:24!F C:G WC [cWW][XIX] 10.52 56.04; 54.15 1.88 -14.14 0.03 19.8
tRNA 3EPH 12!F:23!F G:C WC [cWW][XIX] 10.43 58.22; 58.28 0.07 -8.81 0.51 24.1
tRNA 3EPH 13!F:22!F C:G WC [cWW][XIX] 10.6 54.62; 54.51 0.1 -13.27 0.0 14.6
tRNA 3EPH 15!F:48!F G:C rWb [tWW][XXII] 10.46 38.39; 67.46 29.06 157.51 0.08 19.93
tRNA 3EPH 16!F:59!F U:U rWb* [tWW][XII] 10.54 24.67; 25.62 0.95 -87.99 0.36 41.96
tRNA 3EPH 18!F:55!F G:U fS_1 [tSW][-] 10.34 31.23; 89.56 58.33 -129.19 0.08 39.34
tRNA 3EPH 19!F:56!F G:C WC_Mo [cWW][XIX] 10.13 70.19; 63.15 7.03 -37.32 1.36 61.6
tRNA 3EPH 21!F:47!F A:U S(sb:O2*-N7) [---][-] 7.43 32.79; 122.36 89.57 -162.97 1.24 25.4
tRNA 3EPH 22!F:46!F G:G rH_1 [tWH][VII] 11.25 32.22; 35.47 3.24 -161.02 0.28 10.13
tRNA 3EPH 27!F:43!F G:U WC [---][-] 10.42 53.64; 64.71 11.07 -7.9 0.25 14.55
tRNA 3EPH 28!F:42!F C:G WC [cWW][XIX] 10.47 57.88; 57.96 0.09 -1.96 0.25 16.78
tRNA 3EPH 29!F:41!F A:U WC [cWW][XX] 9.9 60.86; 62.66 1.8 -5.17 0.33 8.98
tRNA 3EPH 30!F:40!F G:C WC [cWW][XIX] 10.39 58.69; 58.57 0.12 -2.52 0.09 23.66
tRNA 3EPH 31!F:39!F A:U WC [cWW][XX] 10.28 59.08; 59.17 0.09 1.39 0.15 11.27
tRNA 3EPH 32!F:38!F U:A sWC [---][-] 11.08 79.62; 28.71 50.91 6.27 0.25 22.85
tRNA 3EPH 35!F:38!F C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.53 119.8; 107.44 12.37 86.55 1.99 68.89
tRNA 3EPH 49!F:65!F C:G WC_Mo [cWW][XIX] 10.86 60.3; 57.18 3.12 -15.12 0.44 26.74
tRNA 3EPH 50!F:64!F U:A Wb [---][-] 10.88 59.45; 37.32 22.13 -3.97 0.05 13.06
tRNA 3EPH 51!F:63!F U:G Wb [cWW][XXVIII] 10.64 72.32; 45.31 27.02 -9.14 0.33 11.19
tRNA 3EPH 52!F:62!F A:U WC [cWW][XX] 10.29 47.3; 59.51 12.21 2.85 0.49 8.36
tRNA 3EPH 53!F:61!F G:C WC [cWW][XIX] 11.28 55.17; 49.58 5.59 -0.06 0.39 7.81
tRNA 3EPH 54!F:58!F U:A rH_1 [tWH][XXIV] 10.75 28.44; 18.75 9.69 -126.81 0.18 18.96