Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3EPJ BPC Identified: 61 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3EPJ 2!E:71!E C:G WC [cWW][XIX] 10.74 54.15; 52.51 1.64 5.57 0.5 3.31
tRNA 3EPJ 3!E:70!E U:A WC [cWW][XX] 10.94 50.16; 53.58 3.42 -2.79 0.74 17.56
tRNA 3EPJ 4!E:69!E C:G WC [cWW][XIX] 10.64 57.03; 55.8 1.22 -10.58 0.44 20.48
tRNA 3EPJ 5!E:68!E G:C WC [cWW][XIX] 10.56 57.49; 49.94 7.55 -9.93 0.15 21.97
tRNA 3EPJ 6!E:67!E U:G WC [---][-] 10.08 63.36; 54.5 8.86 -13.09 0.15 20.41
tRNA 3EPJ 7!E:66!E A:U WC [cWW][XX] 9.94 63.02; 59.91 3.11 -17.59 0.29 27.63
tRNA 3EPJ 8!E:21!E U:A fS(sb:O2*-N1) [tSW][-] 8.78 94.61; 53.17 41.44 148.48 0.19 21.55
tRNA 3EPJ 8!E:14!E U:A rH_1 [tWH][XXIV] 9.79 28.9; 21.96 6.94 -165.02 0.08 8.33
tRNA 3EPJ 9!E:23!E G:C rS*_1 [tHH][-] 12.33 4.3; 11.17 6.86 165.05 0.0 8.25
tRNA 3EPJ 10!E:25!E G:C WC [cWW][XIX] 10.47 55.55; 57.61 2.06 -0.96 0.24 13.94
tRNA 3EPJ 11!E:24!E C:G WC [cWW][XIX] 10.68 54.88; 54.01 0.87 -11.69 0.11 13.28
tRNA 3EPJ 12!E:23!E G:C WC [cWW][XIX] 10.76 54.15; 54.93 0.78 -9.57 0.34 14.46
tRNA 3EPJ 13!E:22!E C:G WC [cWW][XIX] 10.8 53.7; 51.46 2.24 -12.17 0.14 10.72
tRNA 3EPJ 14!E:21!E A:A pfS [cSW][-] 10.2 30.06; 105.62 75.56 -31.9 0.99 28.75
tRNA 3EPJ 15!E:48!E G:C rWb [tWW][XXII] 10.4 37.55; 60.75 23.2 163.08 0.35 12.35
tRNA 3EPJ 18!E:55!E G:U fS_2 [---][-] 9.0 35.06; 109.92 74.86 -140.9 0.38 27.21
tRNA 3EPJ 19!E:56!E G:C WC_Mo [cWW][XIX] 10.01 67.02; 57.47 9.55 -34.86 1.32 65.59
tRNA 3EPJ 22!E:46!E G:G rH_1 [tWH][VII] 10.77 29.92; 39.33 9.41 173.95 0.56 11.56
tRNA 3EPJ 26!E:44!E A:U WC_mo [cWW][XX] 12.82 37.45; 33.17 4.28 -25.98 1.92 41.85
tRNA 3EPJ 27!E:43!E G:U WC [---][-] 10.66 47.36; 58.72 11.36 -7.91 0.32 14.82
tRNA 3EPJ 28!E:42!E C:G WC [cWW][XIX] 10.53 56.4; 56.13 0.27 -3.21 0.05 13.66
tRNA 3EPJ 29!E:41!E A:U WC [cWW][XX] 10.01 63.11; 61.15 1.95 -7.45 0.11 10.91
tRNA 3EPJ 30!E:40!E G:C WC [cWW][XIX] 10.54 56.97; 59.05 2.08 2.01 0.38 10.4
tRNA 3EPJ 31!E:39!E A:U WC [cWW][XX] 10.49 60.05; 56.21 3.83 0.43 0.25 9.46
tRNA 3EPJ 32!E:38!E U:A sWC [---][-] 11.01 84.94; 32.47 52.48 2.61 0.12 14.96
tRNA 3EPJ 49!E:65!E C:G WC [cWW][XIX] 10.91 51.03; 53.62 2.59 -5.83 0.04 6.83
tRNA 3EPJ 50!E:64!E U:A WC [cWW][XX] 10.65 55.43; 55.47 0.05 -2.76 0.14 12.42
tRNA 3EPJ 51!E:63!E U:G WC [---][-] 10.58 58.29; 51.6 6.69 -1.56 0.1 5.51
tRNA 3EPJ 52!E:62!E A:U WC [cWW][XX] 10.5 57.18; 55.96 1.23 -4.8 0.22 10.28
tRNA 3EPJ 53!E:61!E G:C WC [cWW][XIX] 10.74 54.27; 53.78 0.49 -10.73 0.02 14.08
tRNA 3EPJ 54!E:58!E U:A rH_1 [tWH][XXIV] 10.66 29.75; 14.58 15.17 -141.41 0.43 13.45
tRNA 3EPJ 55!E:57!E U:G S(sb:O2*-N7)_1 [---][-] 6.63 78.01; 39.75 38.26 -173.54 1.24 33.13
tRNA 3EPJ 3!F:70!F U:A Wb* [---][-] 9.96 51.15; 74.34 23.19 -3.32 0.08 13.75
tRNA 3EPJ 4!F:69!F C:G WC [cWW][XIX] 10.59 49.46; 57.5 8.04 1.0 0.99 11.25
tRNA 3EPJ 5!F:68!F G:C WC [cWW][XIX] 10.82 51.77; 52.61 0.84 -11.58 0.58 22.1
tRNA 3EPJ 7!F:66!F A:U WC [cWW][XX] 11.07 48.99; 50.6 1.61 -28.85 0.37 43.12
tRNA 3EPJ 8!F:21!F U:A fS(sb:O2*-N1) [tSW][-] 8.86 106.62; 51.14 55.48 152.53 0.36 23.82
tRNA 3EPJ 8!F:14!F U:A rH_1 [tWH][XXIV] 9.24 30.14; 28.62 1.53 -172.75 0.15 8.41
tRNA 3EPJ 9!F:23!F G:C rS*_2 [---][-] 12.68 13.99; 5.25 8.74 -126.98 0.21 10.89
tRNA 3EPJ 10!F:25!F G:C WC [cWW][XIX] 10.57 53.83; 54.12 0.29 -14.97 0.08 16.43
tRNA 3EPJ 11!F:24!F C:G WC [cWW][XIX] 10.68 54.89; 53.93 0.95 -12.64 0.15 18.42
tRNA 3EPJ 12!F:23!F G:C WC [cWW][XIX] 10.48 56.99; 57.9 0.91 -8.4 0.33 24.29
tRNA 3EPJ 13!F:22!F C:G WC [cWW][XIX] 10.65 53.54; 53.3 0.24 -16.51 0.1 14.37
tRNA 3EPJ 15!F:48!F G:C rWb [tWW][XXII] 10.55 38.44; 73.4 34.95 155.47 0.12 18.6
tRNA 3EPJ 16!F:59!F U:U rWb* [tWW][XII] 10.26 22.76; 34.39 11.62 -114.5 0.71 37.18
tRNA 3EPJ 18!F:55!F G:U fS_1 [tSW][-] 10.07 29.73; 103.87 74.14 -136.17 0.46 35.7
tRNA 3EPJ 19!F:56!F G:C pfS*_2 [---][-] 9.94 95.08; 54.06 41.02 -35.43 0.16 46.63
tRNA 3EPJ 22!F:46!F G:G rH_1 [tWH][VII] 11.2 33.32; 31.18 2.14 -173.72 0.37 8.03
tRNA 3EPJ 27!F:43!F G:U WC [---][-] 10.44 48.69; 65.53 16.84 -7.37 0.44 15.64
tRNA 3EPJ 28!F:42!F C:G WC [cWW][XIX] 10.55 56.16; 57.18 1.01 -0.42 0.38 9.65
tRNA 3EPJ 29!F:41!F A:U WC [cWW][XX] 9.88 63.43; 62.58 0.85 -1.88 0.05 4.44
tRNA 3EPJ 30!F:40!F G:C WC [cWW][XIX] 10.49 58.4; 57.06 1.34 -1.23 0.35 9.32
tRNA 3EPJ 31!F:39!F A:U WC [cWW][XX] 10.23 61.2; 59.2 2.0 0.51 0.46 10.61
tRNA 3EPJ 32!F:38!F U:A sWC [---][-] 11.22 80.15; 26.19 53.96 3.84 0.2 17.89
tRNA 3EPJ 48!F:49!F C:C rS(ps:O1P-O2*) [---][-] 9.04 155.13; 90.3 64.83 -66.2 1.48 70.39
tRNA 3EPJ 50!F:64!F U:A Wb [---][-] 10.96 59.42; 38.77 20.65 2.98 0.16 13.94
tRNA 3EPJ 51!F:63!F U:G Wb [cWW][XXVIII] 10.57 76.42; 45.17 31.25 -1.24 0.14 6.99
tRNA 3EPJ 52!F:62!F A:U WC [cWW][XX] 10.46 49.89; 61.34 11.45 -7.48 0.32 7.41
tRNA 3EPJ 53!F:61!F* G:C Wb* [---][-]; Wb* [---][-] 11.69 58.97; 46.47 12.5 -9.73 0.1 17.26
tRNA 3EPJ 54!F:58!F U:A rH_1 [tWH][XXIV] 10.85 31.88; 12.35 19.54 -134.07 0.18 11.71
tRNA 3EPJ 55!F:57!F U:G S(sb:O2*-N7)_1 [---][-] 7.27 73.17; 37.3 35.87 -172.74 2.55 28.55