Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3EPK BPC Identified: 58 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3EPK 2!E:71!E C:G WC [cWW][XIX] 10.69 53.55; 53.95 0.4 -6.93 0.81 31.57
tRNA 3EPK 3!E:70!E U:A WC [cWW][XX] 10.97 50.2; 52.54 2.34 -2.65 0.17 11.45
tRNA 3EPK 4!E:69!E C:G WC [cWW][XIX] 10.45 60.85; 56.37 4.48 -3.09 0.02 16.49
tRNA 3EPK 5!E:68!E G:C WC [cWW][XIX] 10.38 67.48; 57.7 9.78 -4.78 0.16 16.71
tRNA 3EPK 6!E:67!E U:G WC [---][-] 10.23 60.79; 55.51 5.29 -10.44 0.05 16.4
tRNA 3EPK 7!E:66!E A:U WC [cWW][XX] 10.08 62.94; 57.47 5.48 -17.11 0.12 19.78
tRNA 3EPK 8!E:21!E U:A fS(sb:O2*-N1) [tSW][-] 8.8 94.05; 50.65 43.4 151.67 0.47 21.91
tRNA 3EPK 8!E:14!E U:A rH_1 [tWH][XXIV] 9.83 30.45; 25.4 5.05 -165.4 0.14 7.56
tRNA 3EPK 9!E:23!E G:C rS*_1 [tHH][-] 12.24 6.34; 14.13 7.79 148.34 0.11 8.98
tRNA 3EPK 10!E:25!E G:C WC [cWW][XIX] 10.39 54.65; 59.13 4.47 -5.72 0.17 16.61
tRNA 3EPK 11!E:24!E C:G WC [cWW][XIX] 10.6 55.19; 54.1 1.1 -12.59 0.23 14.76
tRNA 3EPK 12!E:23!E G:C WC [cWW][XIX] 10.82 53.45; 52.95 0.5 -9.57 0.35 20.78
tRNA 3EPK 13!E:22!E C:G WC [cWW][XIX] 10.8 52.6; 51.23 1.37 -13.23 0.29 12.23
tRNA 3EPK 14!E:21!E A:A S [tSH][-] 9.93 27.54; 106.28 78.74 -29.55 0.99 28.95
tRNA 3EPK 15!E:48!E G:C rWb [tWW][XXII] 10.64 34.62; 59.87 25.25 155.89 0.35 16.32
tRNA 3EPK 16!E:59!E U:U rWb [tWW][XIII] 8.65 39.47; 37.33 2.14 -174.81 1.03 27.12
tRNA 3EPK 18!E:55!E G:U fS_2 [---][-] 8.97 32.85; 112.47 79.62 -144.89 0.66 25.78
tRNA 3EPK 19!E:56!E G:C WC [cWW][XIX] 9.97 68.23; 55.86 12.37 -29.84 1.36 60.11
tRNA 3EPK 20!E:47!E U:U Wb [cWW][XVI] 7.95 86.22; 43.04 43.19 5.59 2.53 34.36
tRNA 3EPK 22!E:46!E G:G rH_1 [tWH][VII] 10.76 32.29; 37.84 5.55 -173.75 0.17 7.45
tRNA 3EPK 26!E:44!E A:U WC_mo [cWW][XX] 12.67 37.89; 34.26 3.64 -24.85 1.73 39.62
tRNA 3EPK 27!E:43!E G:U WC [---][-] 10.33 52.21; 65.92 13.71 -10.45 0.32 14.12
tRNA 3EPK 28!E:42!E C:G WC [cWW][XIX] 10.53 56.46; 55.75 0.71 -1.12 0.07 11.28
tRNA 3EPK 29!E:41!E A:U WC [cWW][XX] 9.87 63.63; 61.28 2.35 -6.64 0.17 12.49
tRNA 3EPK 30!E:40!E G:C WC [cWW][XIX] 10.42 59.82; 59.66 0.15 -0.22 0.28 14.89
tRNA 3EPK 31!E:39!E A:U WC [cWW][XX] 10.19 61.52; 58.9 2.62 -4.77 0.38 12.45
tRNA 3EPK 32!E:38!E U:A sWC [---][-] 11.21 84.01; 33.39 50.62 10.47 0.14 20.97
tRNA 3EPK 49!E:65!E C:G WC [cWW][XIX] 10.86 53.14; 53.35 0.21 -10.87 0.13 13.7
tRNA 3EPK 50!E:64!E U:A WC [cWW][XX] 10.47 56.16; 58.46 2.3 -3.06 0.03 10.7
tRNA 3EPK 51!E:63!E U:G WC [---][-] 10.48 60.28; 53.42 6.86 -3.64 0.07 5.83
tRNA 3EPK 52!E:62!E A:U WC [cWW][XX] 10.54 56.55; 53.91 2.64 -3.29 0.02 8.89
tRNA 3EPK 53!E:61!E G:C WC [cWW][XIX] 10.65 53.87; 54.14 0.28 -7.25 0.08 9.79
tRNA 3EPK 54!E:58!E U:A rH_1 [tWH][XXIV] 10.28 30.31; 12.31 18.0 -168.88 0.18 8.0
tRNA 3EPK 55!E:57!E U:G S(sb:O2*-N7)_1 [---][-] 6.51 80.38; 38.58 41.8 -178.12 1.67 27.89
tRNA 3EPK 4!F:69!F C:G WC [cWW][XIX] 11.05 43.08; 56.57 13.49 4.37 0.07 9.1
tRNA 3EPK 5!F:68!F G:C WC [cWW][XIX] 10.68 53.81; 54.17 0.37 -12.15 0.29 20.43
tRNA 3EPK 7!F:66!F A:U WC [cWW][XX] 11.44 43.57; 45.04 1.47 -27.75 0.23 33.25
tRNA 3EPK 8!F:14!F U:A rH_1 [tWH][XXIV] 9.32 36.04; 25.34 10.7 -172.29 0.13 3.88
tRNA 3EPK 9!F:23!F G:C rS*_1 [tHH][-] 12.7 10.52; 6.31 4.21 -129.94 0.03 6.93
tRNA 3EPK 10!F:25!F G:C WC [cWW][XIX] 10.56 54.61; 54.56 0.05 -12.78 0.06 15.51
tRNA 3EPK 11!F:24!F C:G WC [cWW][XIX] 10.61 52.29; 54.6 2.31 -8.11 0.24 17.22
tRNA 3EPK 12!F:23!F G:C WC [cWW][XIX] 10.72 54.66; 55.54 0.88 -9.27 0.56 21.85
tRNA 3EPK 13!F:22!F C:G WC [cWW][XIX] 10.66 53.51; 53.19 0.32 -15.76 0.05 17.58
tRNA 3EPK 15!F:48!F G:C rWb [tWW][XXII] 10.17 39.13; 73.43 34.31 161.06 0.27 14.91
tRNA 3EPK 16!F:59!F U:U rWb* [tWW][XII] 10.11 19.54; 36.09 16.55 -113.92 0.39 34.32
tRNA 3EPK 22!F:46!F G:G rH_1 [tWH][VII] 10.88 33.8; 39.76 5.96 -161.31 0.46 10.54
tRNA 3EPK 27!F:43!F G:U WC [---][-] 10.35 50.01; 63.72 13.71 -8.61 0.34 14.18
tRNA 3EPK 28!F:42!F C:G WC [cWW][XIX] 10.47 58.29; 56.9 1.38 -1.33 0.43 15.5
tRNA 3EPK 29!F:41!F A:U WC [cWW][XX] 9.91 62.71; 61.37 1.34 -4.11 0.1 6.85
tRNA 3EPK 30!F:40!F G:C WC [cWW][XIX] 10.48 58.11; 56.32 1.78 0.86 0.4 20.12
tRNA 3EPK 31!F:39!F A:U WC [cWW][XX] 10.25 60.73; 59.33 1.4 -0.74 0.02 8.39
tRNA 3EPK 32!F:38!F U:A sWC [---][-] 11.17 81.02; 23.44 57.58 1.98 0.32 19.69
tRNA 3EPK 49!F:65!F C:G WC [cWW][XIX] 11.32 60.77; 50.85 9.92 -5.34 0.11 17.35
tRNA 3EPK 50!F:64!F U:A Wb [---][-] 11.45 52.38; 36.35 16.03 9.86 0.63 6.29
tRNA 3EPK 51!F:63!F U:G WC_Mo [---][-] 11.03 64.35; 54.43 9.92 -2.42 0.25 8.56
tRNA 3EPK 52!F:62!F A:U WC [cWW][XX] 10.64 56.84; 55.35 1.49 -8.41 0.41 8.42
tRNA 3EPK 53!F:61!F G:C WC [cWW][XIX] 10.83 46.23; 57.77 11.54 -3.93 0.12 7.89
tRNA 3EPK 54!F:58!F U:A rH_1 [tWH][XXIV] 10.22 36.19; 13.37 22.82 -164.69 0.03 5.71