Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3EPK
BPC Identified: 58
Ambiguities: 0
tRNA |
3EPK |
2!E:71!E |
C:G |
WC [cWW][XIX] |
10.69 |
53.55; 53.95 |
0.4 |
-6.93 |
0.81 |
31.57 |
tRNA |
3EPK |
3!E:70!E |
U:A |
WC [cWW][XX] |
10.97 |
50.2; 52.54 |
2.34 |
-2.65 |
0.17 |
11.45 |
tRNA |
3EPK |
4!E:69!E |
C:G |
WC [cWW][XIX] |
10.45 |
60.85; 56.37 |
4.48 |
-3.09 |
0.02 |
16.49 |
tRNA |
3EPK |
5!E:68!E |
G:C |
WC [cWW][XIX] |
10.38 |
67.48; 57.7 |
9.78 |
-4.78 |
0.16 |
16.71 |
tRNA |
3EPK |
6!E:67!E |
U:G |
WC [---][-] |
10.23 |
60.79; 55.51 |
5.29 |
-10.44 |
0.05 |
16.4 |
tRNA |
3EPK |
7!E:66!E |
A:U |
WC [cWW][XX] |
10.08 |
62.94; 57.47 |
5.48 |
-17.11 |
0.12 |
19.78 |
tRNA |
3EPK |
8!E:21!E |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.8 |
94.05; 50.65 |
43.4 |
151.67 |
0.47 |
21.91 |
tRNA |
3EPK |
8!E:14!E |
U:A |
rH_1 [tWH][XXIV] |
9.83 |
30.45; 25.4 |
5.05 |
-165.4 |
0.14 |
7.56 |
tRNA |
3EPK |
9!E:23!E |
G:C |
rS*_1 [tHH][-] |
12.24 |
6.34; 14.13 |
7.79 |
148.34 |
0.11 |
8.98 |
tRNA |
3EPK |
10!E:25!E |
G:C |
WC [cWW][XIX] |
10.39 |
54.65; 59.13 |
4.47 |
-5.72 |
0.17 |
16.61 |
tRNA |
3EPK |
11!E:24!E |
C:G |
WC [cWW][XIX] |
10.6 |
55.19; 54.1 |
1.1 |
-12.59 |
0.23 |
14.76 |
tRNA |
3EPK |
12!E:23!E |
G:C |
WC [cWW][XIX] |
10.82 |
53.45; 52.95 |
0.5 |
-9.57 |
0.35 |
20.78 |
tRNA |
3EPK |
13!E:22!E |
C:G |
WC [cWW][XIX] |
10.8 |
52.6; 51.23 |
1.37 |
-13.23 |
0.29 |
12.23 |
tRNA |
3EPK |
14!E:21!E |
A:A |
S [tSH][-] |
9.93 |
27.54; 106.28 |
78.74 |
-29.55 |
0.99 |
28.95 |
tRNA |
3EPK |
15!E:48!E |
G:C |
rWb [tWW][XXII] |
10.64 |
34.62; 59.87 |
25.25 |
155.89 |
0.35 |
16.32 |
tRNA |
3EPK |
16!E:59!E |
U:U |
rWb [tWW][XIII] |
8.65 |
39.47; 37.33 |
2.14 |
-174.81 |
1.03 |
27.12 |
tRNA |
3EPK |
18!E:55!E |
G:U |
fS_2 [---][-] |
8.97 |
32.85; 112.47 |
79.62 |
-144.89 |
0.66 |
25.78 |
tRNA |
3EPK |
19!E:56!E |
G:C |
WC [cWW][XIX] |
9.97 |
68.23; 55.86 |
12.37 |
-29.84 |
1.36 |
60.11 |
tRNA |
3EPK |
20!E:47!E |
U:U |
Wb [cWW][XVI] |
7.95 |
86.22; 43.04 |
43.19 |
5.59 |
2.53 |
34.36 |
tRNA |
3EPK |
22!E:46!E |
G:G |
rH_1 [tWH][VII] |
10.76 |
32.29; 37.84 |
5.55 |
-173.75 |
0.17 |
7.45 |
tRNA |
3EPK |
26!E:44!E |
A:U |
WC_mo [cWW][XX] |
12.67 |
37.89; 34.26 |
3.64 |
-24.85 |
1.73 |
39.62 |
tRNA |
3EPK |
27!E:43!E |
G:U |
WC [---][-] |
10.33 |
52.21; 65.92 |
13.71 |
-10.45 |
0.32 |
14.12 |
tRNA |
3EPK |
28!E:42!E |
C:G |
WC [cWW][XIX] |
10.53 |
56.46; 55.75 |
0.71 |
-1.12 |
0.07 |
11.28 |
tRNA |
3EPK |
29!E:41!E |
A:U |
WC [cWW][XX] |
9.87 |
63.63; 61.28 |
2.35 |
-6.64 |
0.17 |
12.49 |
tRNA |
3EPK |
30!E:40!E |
G:C |
WC [cWW][XIX] |
10.42 |
59.82; 59.66 |
0.15 |
-0.22 |
0.28 |
14.89 |
tRNA |
3EPK |
31!E:39!E |
A:U |
WC [cWW][XX] |
10.19 |
61.52; 58.9 |
2.62 |
-4.77 |
0.38 |
12.45 |
tRNA |
3EPK |
32!E:38!E |
U:A |
sWC [---][-] |
11.21 |
84.01; 33.39 |
50.62 |
10.47 |
0.14 |
20.97 |
tRNA |
3EPK |
49!E:65!E |
C:G |
WC [cWW][XIX] |
10.86 |
53.14; 53.35 |
0.21 |
-10.87 |
0.13 |
13.7 |
tRNA |
3EPK |
50!E:64!E |
U:A |
WC [cWW][XX] |
10.47 |
56.16; 58.46 |
2.3 |
-3.06 |
0.03 |
10.7 |
tRNA |
3EPK |
51!E:63!E |
U:G |
WC [---][-] |
10.48 |
60.28; 53.42 |
6.86 |
-3.64 |
0.07 |
5.83 |
tRNA |
3EPK |
52!E:62!E |
A:U |
WC [cWW][XX] |
10.54 |
56.55; 53.91 |
2.64 |
-3.29 |
0.02 |
8.89 |
tRNA |
3EPK |
53!E:61!E |
G:C |
WC [cWW][XIX] |
10.65 |
53.87; 54.14 |
0.28 |
-7.25 |
0.08 |
9.79 |
tRNA |
3EPK |
54!E:58!E |
U:A |
rH_1 [tWH][XXIV] |
10.28 |
30.31; 12.31 |
18.0 |
-168.88 |
0.18 |
8.0 |
tRNA |
3EPK |
55!E:57!E |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.51 |
80.38; 38.58 |
41.8 |
-178.12 |
1.67 |
27.89 |
tRNA |
3EPK |
4!F:69!F |
C:G |
WC [cWW][XIX] |
11.05 |
43.08; 56.57 |
13.49 |
4.37 |
0.07 |
9.1 |
tRNA |
3EPK |
5!F:68!F |
G:C |
WC [cWW][XIX] |
10.68 |
53.81; 54.17 |
0.37 |
-12.15 |
0.29 |
20.43 |
tRNA |
3EPK |
7!F:66!F |
A:U |
WC [cWW][XX] |
11.44 |
43.57; 45.04 |
1.47 |
-27.75 |
0.23 |
33.25 |
tRNA |
3EPK |
8!F:14!F |
U:A |
rH_1 [tWH][XXIV] |
9.32 |
36.04; 25.34 |
10.7 |
-172.29 |
0.13 |
3.88 |
tRNA |
3EPK |
9!F:23!F |
G:C |
rS*_1 [tHH][-] |
12.7 |
10.52; 6.31 |
4.21 |
-129.94 |
0.03 |
6.93 |
tRNA |
3EPK |
10!F:25!F |
G:C |
WC [cWW][XIX] |
10.56 |
54.61; 54.56 |
0.05 |
-12.78 |
0.06 |
15.51 |
tRNA |
3EPK |
11!F:24!F |
C:G |
WC [cWW][XIX] |
10.61 |
52.29; 54.6 |
2.31 |
-8.11 |
0.24 |
17.22 |
tRNA |
3EPK |
12!F:23!F |
G:C |
WC [cWW][XIX] |
10.72 |
54.66; 55.54 |
0.88 |
-9.27 |
0.56 |
21.85 |
tRNA |
3EPK |
13!F:22!F |
C:G |
WC [cWW][XIX] |
10.66 |
53.51; 53.19 |
0.32 |
-15.76 |
0.05 |
17.58 |
tRNA |
3EPK |
15!F:48!F |
G:C |
rWb [tWW][XXII] |
10.17 |
39.13; 73.43 |
34.31 |
161.06 |
0.27 |
14.91 |
tRNA |
3EPK |
16!F:59!F |
U:U |
rWb* [tWW][XII] |
10.11 |
19.54; 36.09 |
16.55 |
-113.92 |
0.39 |
34.32 |
tRNA |
3EPK |
22!F:46!F |
G:G |
rH_1 [tWH][VII] |
10.88 |
33.8; 39.76 |
5.96 |
-161.31 |
0.46 |
10.54 |
tRNA |
3EPK |
27!F:43!F |
G:U |
WC [---][-] |
10.35 |
50.01; 63.72 |
13.71 |
-8.61 |
0.34 |
14.18 |
tRNA |
3EPK |
28!F:42!F |
C:G |
WC [cWW][XIX] |
10.47 |
58.29; 56.9 |
1.38 |
-1.33 |
0.43 |
15.5 |
tRNA |
3EPK |
29!F:41!F |
A:U |
WC [cWW][XX] |
9.91 |
62.71; 61.37 |
1.34 |
-4.11 |
0.1 |
6.85 |
tRNA |
3EPK |
30!F:40!F |
G:C |
WC [cWW][XIX] |
10.48 |
58.11; 56.32 |
1.78 |
0.86 |
0.4 |
20.12 |
tRNA |
3EPK |
31!F:39!F |
A:U |
WC [cWW][XX] |
10.25 |
60.73; 59.33 |
1.4 |
-0.74 |
0.02 |
8.39 |
tRNA |
3EPK |
32!F:38!F |
U:A |
sWC [---][-] |
11.17 |
81.02; 23.44 |
57.58 |
1.98 |
0.32 |
19.69 |
tRNA |
3EPK |
49!F:65!F |
C:G |
WC [cWW][XIX] |
11.32 |
60.77; 50.85 |
9.92 |
-5.34 |
0.11 |
17.35 |
tRNA |
3EPK |
50!F:64!F |
U:A |
Wb [---][-] |
11.45 |
52.38; 36.35 |
16.03 |
9.86 |
0.63 |
6.29 |
tRNA |
3EPK |
51!F:63!F |
U:G |
WC_Mo [---][-] |
11.03 |
64.35; 54.43 |
9.92 |
-2.42 |
0.25 |
8.56 |
tRNA |
3EPK |
52!F:62!F |
A:U |
WC [cWW][XX] |
10.64 |
56.84; 55.35 |
1.49 |
-8.41 |
0.41 |
8.42 |
tRNA |
3EPK |
53!F:61!F |
G:C |
WC [cWW][XIX] |
10.83 |
46.23; 57.77 |
11.54 |
-3.93 |
0.12 |
7.89 |
tRNA |
3EPK |
54!F:58!F |
U:A |
rH_1 [tWH][XXIV] |
10.22 |
36.19; 13.37 |
22.82 |
-164.69 |
0.03 |
5.71 |