Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3EPL
BPC Identified: 52
Ambiguities: 0
| tRNA |
3EPL |
2!E:71!E |
C:G |
WC [cWW][XIX] |
10.73 |
53.87; 52.82 |
1.05 |
-7.08 |
0.22 |
10.04 |
| tRNA |
3EPL |
5!E:68!E |
G:C |
Wb [---][-] |
10.58 |
44.16; 59.9 |
15.74 |
-11.48 |
0.47 |
25.36 |
| tRNA |
3EPL |
6!E:67!E |
U:G |
WC [---][-] |
10.23 |
60.46; 56.6 |
3.86 |
-13.5 |
0.19 |
29.86 |
| tRNA |
3EPL |
7!E:66!E |
A:U |
WC [cWW][XX] |
10.54 |
52.91; 56.09 |
3.18 |
-23.78 |
0.05 |
25.18 |
| tRNA |
3EPL |
8!E:48!E |
U:C |
rpS [cSS][-] |
4.59 |
138.83; 105.89 |
32.94 |
38.26 |
0.83 |
11.83 |
| tRNA |
3EPL |
8!E:14!E |
U:A |
rH_1 [tWH][XXIV] |
10.25 |
23.98; 9.99 |
13.99 |
-147.64 |
0.33 |
27.0 |
| tRNA |
3EPL |
9!E:23!E |
G:C |
rS*_1 [tHH][-] |
12.16 |
10.86; 5.91 |
4.95 |
-141.92 |
0.86 |
18.22 |
| tRNA |
3EPL |
10!E:25!E |
G:C |
WC [cWW][XIX] |
10.68 |
52.74; 55.15 |
2.41 |
-1.56 |
0.32 |
9.95 |
| tRNA |
3EPL |
11!E:24!E |
C:G |
WC [cWW][XIX] |
10.85 |
55.01; 54.06 |
0.95 |
0.0 |
0.03 |
0.45 |
| tRNA |
3EPL |
12!E:23!E |
G:C |
WC [cWW][XIX] |
10.82 |
52.54; 56.97 |
4.43 |
-1.91 |
0.35 |
11.93 |
| tRNA |
3EPL |
13!E:22!E |
C:G |
WC [cWW][XIX] |
10.84 |
53.01; 50.78 |
2.23 |
-2.7 |
0.22 |
5.26 |
| tRNA |
3EPL |
15!E:48!E |
G:C |
rWb [tWW][XXII] |
11.06 |
50.47; 48.11 |
2.36 |
156.31 |
0.24 |
25.87 |
| tRNA |
3EPL |
16!E:59!E |
U:U |
rWC [---][-] |
9.22 |
27.94; 35.9 |
7.95 |
-166.06 |
1.25 |
36.82 |
| tRNA |
3EPL |
27!E:43!E |
G:U |
WC [---][-] |
10.29 |
52.95; 69.77 |
16.81 |
-10.48 |
0.52 |
16.84 |
| tRNA |
3EPL |
28!E:42!E |
C:G |
WC [cWW][XIX] |
10.43 |
55.95; 58.33 |
2.38 |
-13.27 |
0.15 |
35.66 |
| tRNA |
3EPL |
29!E:41!E |
A:U |
WC [cWW][XX] |
9.91 |
65.78; 61.79 |
3.99 |
-3.69 |
0.23 |
12.56 |
| tRNA |
3EPL |
30!E:40!E |
G:C |
WC [cWW][XIX] |
10.4 |
54.98; 61.42 |
6.44 |
6.22 |
0.18 |
15.71 |
| tRNA |
3EPL |
31!E:39!E |
A:U |
WC [cWW][XX] |
10.01 |
64.12; 58.51 |
5.61 |
0.33 |
0.58 |
16.28 |
| tRNA |
3EPL |
32!E:38!E |
U:A |
sWC [---][-] |
11.12 |
81.98; 26.0 |
55.97 |
6.7 |
0.41 |
17.86 |
| tRNA |
3EPL |
49!E:65!E |
C:G |
WC [cWW][XIX] |
10.8 |
54.53; 53.35 |
1.18 |
-5.71 |
0.19 |
11.77 |
| tRNA |
3EPL |
50!E:64!E |
U:A |
WC [cWW][XX] |
10.33 |
57.39; 59.86 |
2.46 |
-10.36 |
0.59 |
21.83 |
| tRNA |
3EPL |
51!E:63!E |
U:G |
WC [---][-] |
10.56 |
58.69; 54.07 |
4.62 |
-5.29 |
0.11 |
12.03 |
| tRNA |
3EPL |
52!E:62!E |
A:U |
WC [cWW][XX] |
10.69 |
54.56; 56.24 |
1.69 |
0.49 |
0.17 |
3.49 |
| tRNA |
3EPL |
53!E:61!E |
G:C |
WC [cWW][XIX] |
10.87 |
54.37; 52.95 |
1.42 |
-9.15 |
0.04 |
12.13 |
| tRNA |
3EPL |
54!E:58!E |
U:A |
rH_1 [tWH][XXIV] |
10.39 |
32.51; 16.23 |
16.28 |
-171.91 |
0.96 |
36.82 |
| tRNA |
3EPL |
3!F:70!F |
U:A |
WC [cWW][XX] |
10.67 |
52.66; 65.15 |
12.48 |
10.5 |
0.02 |
14.54 |
| tRNA |
3EPL |
4!F:69!F |
C:G |
WC [cWW][XIX] |
11.58 |
50.15; 53.59 |
3.44 |
-1.74 |
0.28 |
11.45 |
| tRNA |
3EPL |
5!F:68!F |
G:C |
WC [cWW][XIX] |
10.85 |
50.84; 53.78 |
2.93 |
-4.08 |
0.64 |
15.33 |
| tRNA |
3EPL |
7!F:66!F |
A:U |
WC [cWW][XX] |
10.57 |
50.08; 54.0 |
3.92 |
-32.08 |
1.1 |
20.75 |
| tRNA |
3EPL |
8!F:21!F |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.92 |
104.51; 44.43 |
60.09 |
151.04 |
0.93 |
31.66 |
| tRNA |
3EPL |
8!F:14!F |
U:A |
rH_1 [tWH][XXIV] |
9.15 |
29.89; 31.53 |
1.65 |
-175.29 |
0.13 |
6.71 |
| tRNA |
3EPL |
9!F:23!F |
G:C |
rS*_2 [---][-] |
12.42 |
9.51; 6.14 |
3.37 |
-91.29 |
0.72 |
25.1 |
| tRNA |
3EPL |
10!F:25!F |
G:C |
WC [cWW][XIX] |
10.26 |
56.97; 60.43 |
3.46 |
-2.72 |
0.79 |
15.22 |
| tRNA |
3EPL |
11!F:24!F |
C:G |
WC [cWW][XIX] |
10.64 |
56.53; 53.63 |
2.9 |
-1.78 |
0.8 |
18.62 |
| tRNA |
3EPL |
12!F:23!F |
G:C |
WC [cWW][XIX] |
10.59 |
56.93; 57.1 |
0.16 |
-6.31 |
0.19 |
12.87 |
| tRNA |
3EPL |
13!F:22!F |
C:G |
WC [cWW][XIX] |
10.81 |
49.77; 51.05 |
1.28 |
-19.14 |
0.22 |
19.04 |
| tRNA |
3EPL |
15!F:48!F |
G:C |
srWC [---][-] |
10.6 |
42.08; 74.76 |
32.68 |
161.82 |
0.84 |
28.11 |
| tRNA |
3EPL |
16!F:59!F |
U:U |
rWb [tWW][XIII] |
9.06 |
27.82; 47.12 |
19.3 |
-167.63 |
0.11 |
16.16 |
| tRNA |
3EPL |
18!F:55!F |
G:U |
fS_1 [tSW][-] |
9.75 |
38.16; 97.05 |
58.89 |
-113.84 |
0.2 |
48.85 |
| tRNA |
3EPL |
22!F:46!F |
G:G |
rH_1 [tWH][VII] |
11.29 |
35.46; 36.82 |
1.37 |
-177.11 |
0.17 |
9.98 |
| tRNA |
3EPL |
27!F:43!F |
G:U |
WC [---][-] |
10.57 |
50.81; 64.22 |
13.4 |
-1.42 |
0.51 |
12.65 |
| tRNA |
3EPL |
28!F:42!F |
C:G |
WC [cWW][XIX] |
10.45 |
58.83; 58.04 |
0.79 |
-1.31 |
0.07 |
25.49 |
| tRNA |
3EPL |
29!F:41!F |
A:U |
WC [cWW][XX] |
10.06 |
61.68; 61.6 |
0.08 |
6.62 |
0.02 |
14.61 |
| tRNA |
3EPL |
30!F:40!F |
G:C |
WC [cWW][XIX] |
10.57 |
55.49; 60.19 |
4.71 |
5.86 |
0.1 |
11.13 |
| tRNA |
3EPL |
31!F:39!F |
A:U |
WC [cWW][XX] |
10.35 |
57.98; 59.31 |
1.33 |
7.43 |
0.28 |
13.19 |
| tRNA |
3EPL |
32!F:38!F |
U:A |
sWC [---][-] |
11.26 |
83.52; 19.13 |
64.39 |
3.95 |
0.13 |
26.86 |
| tRNA |
3EPL |
33!F:36!F |
U:A |
pS(ps:O1P-N6) [---][-] |
12.71 |
121.85; 32.11 |
89.74 |
-96.08 |
1.35 |
70.06 |
| tRNA |
3EPL |
49!F:65!F |
C:G |
WC [cWW][XIX] |
10.53 |
50.61; 58.19 |
7.58 |
-15.22 |
1.44 |
41.97 |
| tRNA |
3EPL |
50!F:64!F |
U:A |
WC [cWW][XX] |
11.59 |
51.99; 46.33 |
5.65 |
7.65 |
0.05 |
15.03 |
| tRNA |
3EPL |
52!F:62!F |
A:U |
WC [cWW][XX] |
10.94 |
61.72; 57.0 |
4.73 |
-4.32 |
0.15 |
8.84 |
| tRNA |
3EPL |
53!F:61!F |
G:C |
WC [cWW][XIX] |
11.43 |
46.07; 45.96 |
0.11 |
6.3 |
0.18 |
4.52 |
| tRNA |
3EPL |
55!F:58!F |
U:A |
rH_1 [tWH][XXIV] |
9.13 |
54.51; 34.84 |
19.67 |
-78.2 |
2.29 |
41.4 |