Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3F2Y BPC Identified: 53 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3F2Y 1!X:112!X G:C WC [cWW][XIX] 10.71 58.35; 51.31 7.04 3.17 0.91 16.74
Riboswitch 3F2Y 2!X:111!X G:U Wb [cWW][XXVIII] 10.2 47.99; 67.27 19.28 -11.18 0.4 15.84
Riboswitch 3F2Y 3!X:110!X A:U WC [cWW][XX] 10.37 54.82; 62.29 7.46 -13.95 0.1 18.14
Riboswitch 3F2Y 4!X:109!X U:A WC [cWW][XX] 10.42 61.76; 53.39 8.38 -15.65 0.38 18.57
Riboswitch 3F2Y 5!X:108!X C:G Wb [---][-] 10.37 70.29; 55.37 14.92 -14.69 0.04 17.63
Riboswitch 3F2Y 6!X:107!X U:A WC [cWW][XX] 10.41 60.78; 52.57 8.21 -14.91 0.12 18.53
Riboswitch 3F2Y 7!X:106X* U:A WC [cWW][XX]; Wb* [---][-] 10.85 45.33; 56.76 11.43 14.12 0.52 31.48
Riboswitch 3F2Y 8!X:105!X C:G WC [cWW][XIX] 10.63 54.47; 58.17 3.7 -12.04 0.03 17.09
Riboswitch 3F2Y 9!X:104!X G:A S [tSH][XI] 9.75 95.01; 5.67 89.34 -30.36 1.85 38.4
Riboswitch 3F2Y 11!X:31!X G:C rpS [cSS][-] 5.41 96.31; 153.17 56.86 -33.92 0.4 39.71
Riboswitch 3F2Y 12!X:93!X G:G rS [tSS][IV] 8.38 62.33; 76.32 13.99 160.84 0.56 49.39
Riboswitch 3F2Y 13!X:28!X C:G pfS [cSW][-] 9.29 99.66; 56.27 43.39 -11.18 0.37 12.82
Riboswitch 3F2Y 14!X:28!X A:G S [tSH][XI] 9.75 7.22; 101.37 94.16 -29.85 0.61 13.87
Riboswitch 3F2Y 15!X:27!X G:C WC [cWW][XIX] 10.58 56.83; 57.17 0.34 -4.26 0.11 5.21
Riboswitch 3F2Y 16!X:26!X G:C WC [cWW][XIX] 10.51 56.53; 57.79 1.26 -5.07 0.01 13.92
Riboswitch 3F2Y 17!X:25!X G:C WC [cWW][XIX] 10.77 50.23; 52.22 1.99 -0.92 0.79 22.12
Riboswitch 3F2Y 18!X:22!X U:A rH_1 [tWH][XXIV] 9.8 34.17; 17.8 16.37 -172.62 0.43 15.91
Riboswitch 3F2Y 19!X:90!X G:A S [tSH][XI] 9.28 101.35; 8.42 92.93 -29.42 0.68 30.01
Riboswitch 3F2Y 19!X:21!X G:A S(sb:O2*-N7) [---][-] 7.27 82.55; 29.82 52.73 -166.25 1.54 32.75
Riboswitch 3F2Y 29!X:94!X A:U WC [cWW][XX] 10.58 54.35; 51.22 3.13 -7.41 0.48 16.59
Riboswitch 3F2Y 30!X:93!X C:G WC [cWW][XIX] 10.54 57.71; 45.69 12.02 -19.6 0.2 24.68
Riboswitch 3F2Y 31!X:84!X C:G WC [cWW][XIX] 10.56 57.55; 49.96 7.6 -20.3 0.42 29.49
Riboswitch 3F2Y 32!X:83!X G:C WC [cWW][XIX] 10.98 50.62; 49.67 0.95 -14.58 0.02 17.36
Riboswitch 3F2Y 33!X:104!X G:A rS [tSS][-] 8.32 86.52; 64.24 22.28 175.32 0.04 4.37
Riboswitch 3F2Y 33!X:46!X G:C WC [cWW][XIX] 10.81 56.69; 50.91 5.78 -8.12 0.46 14.24
Riboswitch 3F2Y 34!X:105!X U:G rS(ss:O2*-O2*)_2 [---][-] 5.33 169.01; 147.87 21.15 -125.23 0.92 29.21
Riboswitch 3F2Y 34!X:45!X U:A WC [cWW][XX] 10.11 57.97; 63.26 5.3 -6.4 0.24 11.38
Riboswitch 3F2Y 35!X:44!X G:C WC [cWW][XIX] 10.58 55.85; 52.77 3.08 -6.12 0.3 17.07
Riboswitch 3F2Y 36!X:43!X G:C WC [cWW][XIX] 10.69 53.83; 49.42 4.41 -3.87 0.38 27.21
Riboswitch 3F2Y 37!X:40!X U:A rH_1 [tWH][XXIV] 9.37 35.2; 22.79 12.41 -175.12 0.51 4.79
Riboswitch 3F2Y 38!X:70!X A:G S [tSH][XI] 9.62 5.99; 95.52 89.52 -18.64 1.13 35.57
Riboswitch 3F2Y 41!X:82!X G:C WC [cWW][XIX] 10.57 52.25; 55.0 2.75 -16.2 0.04 24.32
Riboswitch 3F2Y 41!X:63!X G:A rS [tSS][-] 8.38 84.71; 56.81 27.89 160.23 0.96 37.0
Riboswitch 3F2Y 42!X:81!X U:A WC [cWW][XX] 10.8 52.34; 51.04 1.3 -4.47 0.29 13.54
Riboswitch 3F2Y 46!X:104!X C:A rpS(bs:O2-O2*) [cSS][-] 5.58 97.71; 158.28 60.57 -59.25 0.36 15.58
Riboswitch 3F2Y 49!X:60!X A:U WC [cWW][XX] 10.9 53.52; 64.68 11.16 -7.26 0.08 12.14
Riboswitch 3F2Y 50!X:59!X A:U WC [cWW][XX] 10.05 66.31; 59.11 7.2 -13.78 0.63 25.68
Riboswitch 3F2Y 51!X:58!X G:C WC [cWW][XIX] 10.67 58.33; 49.45 8.88 -9.81 0.15 24.17
Riboswitch 3F2Y 52!X:57!X U:G Wb [cWW][XXVIII] 10.3 75.98; 49.65 26.33 -5.76 0.04 12.6
Riboswitch 3F2Y 62!X:83!X G:C rpS [cSS][-] 5.27 104.22; 149.72 45.5 -38.85 0.42 29.7
Riboswitch 3F2Y 63!X:82!X A:C rpS(bs:O2-O2*) [cSS][-] 5.72 148.98; 106.58 42.4 -32.23 1.83 13.63
Riboswitch 3F2Y 64!X:80!X U:A WC [cWW][XX] 10.09 58.66; 59.02 0.36 -1.9 0.46 1.4
Riboswitch 3F2Y 65!X:79!X U:A WC [cWW][XX] 10.46 53.14; 61.62 8.49 -11.57 0.06 17.27
Riboswitch 3F2Y 66!X:78!X U:A WC [cWW][XX] 10.42 55.64; 56.85 1.21 -7.01 0.5 16.12
Riboswitch 3F2Y 67!X:77!X G:C WC [cWW][XIX] 10.48 56.62; 56.23 0.39 -8.17 0.23 12.79
Riboswitch 3F2Y 68!X:76!X G:C WC [cWW][XIX] 10.75 58.18; 48.66 9.52 -2.94 0.59 17.44
Riboswitch 3F2Y 69!X:73!X U:A rH_1 [tWH][XXIV] 10.35 33.82; 13.31 20.52 -161.48 0.32 17.68
Riboswitch 3F2Y 70!X:72!X G:A S(sb:O2*-N7) [---][-] 7.07 81.32; 34.32 47.0 -159.74 1.26 35.37
Riboswitch 3F2Y 85!X:98!X A:G WC [cWW][VIII] 12.82 43.91; 48.58 4.67 -5.88 0.36 13.79
Riboswitch 3F2Y 86!X:97!X C:G WC [cWW][XIX] 10.51 55.27; 53.53 1.74 -13.56 0.63 23.24
Riboswitch 3F2Y 87!X:96!X A:U WC [cWW][XX] 10.28 55.68; 57.33 1.65 -18.76 0.12 23.64
Riboswitch 3F2Y 88!X:95!X G:C WC [cWW][XIX] 10.64 54.92; 50.48 4.44 -16.33 1.19 35.85
Riboswitch 3F2Y 89!X:92!X U:A rH_1 [tWH][XXIV] 9.41 33.01; 20.73 12.29 -163.41 0.53 7.93